Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VGK	43203	2025-01-23	2023-12-27	2.4	3.44	2.61	3.1	0.005	1.04	0.0	0.06	13.84	0.01	2.099	3.12	0.65	7.0	92.3	0.6	-1.00	0.84	0.81	4.28	3.2	0.004	0.83	0.0	0.05	15.21	0.01	2.431	7.02	1.09	5.4	94.6	0.0	0.32	0.85	0.81	0.86	3.08	20567	2672	20	0	0	135	0	logfile
✔	8XLR	38456	2025-01-19	2023-12-26	2.93	3.11	2.94	3.1	0.005	0.72	2.0	0.05	17.01	0.01	2.293	1.57	0.59	2.4	97.6	0.0	0.05	0.69	0.83	2.02	3.1	0.002	0.49	0.0	0.04	16.71	0.00	2.343	1.89	2.00	1.8	98.2	0.0	0.99	0.27	0.69	0.84	1.84	13338	1514	4	0	66	0	0	logfile
✔	8XLN	38454	2025-01-17	2023-12-26	3.78	3.92	3.75	3.8	0.004	0.65	0.0	0.04	17.14	0.00	2.162	7.15	0.00	6.2	93.8	0.0	0.46	0.78	0.81	1.72	3.8	0.003	0.59	0.0	0.04	16.30	0.00	2.499	5.52	1.30	5.7	94.3	0.0	0.46	0.38	0.79	0.82	1.29	6593	789	8	0	15	0	0	logfile
✔	8XLV	38460	2025-01-26	2023-12-26	3.07	2.39	3.08	3.2	0.003	0.67	1.0	0.05	13.41	0.01	2.202	11.82	0.15	7.8	91.9	0.3	-1.74	0.66	0.70	2.55	2.1	0.003	0.64	0.0	0.04	15.47	0.00	2.312	8.74	2.78	7.1	92.8	0.1	-1.22	1.09	0.73	0.76	2.46	24219	3025	12	0	36	0	0	logfile
✔	8XKW	38429	2025-01-20	2023-12-25	3.64	4.60	3.48	3.9	0.004	0.68	2.0	0.06	15.66	0.00	2.313	7.82	0.24	3.0	97.0	0.0	1.25	0.60	0.79	2.61	3.9	0.002	0.61	4.0	0.06	16.00	0.00	2.409	4.95	0.61	1.7	98.3	0.0	1.84	1.19	0.60	0.79	2.57	14702	960	10	0	0	0	7182	logfile
✔	8XKY	38431	2025-01-20	2023-12-25	3.42	4.51	3.38	3.8	0.006	0.85	0.0	0.06	15.24	0.01	2.386	5.89	0.24	3.8	96.2	0.0	1.37	0.60	0.78	1.91	3.8	0.003	0.75	2.0	0.06	15.76	0.00	2.274	6.02	2.29	1.8	98.2	0.0	1.39	0.97	0.61	0.80	1.69	14928	968	10	0	0	0	7332	logfile
✔	8XKX	38430	2025-01-20	2023-12-25	3.7	3.94	3.42	4.0	0.004	0.74	0.0	0.06	16.10	0.00	2.288	4.48	0.24	1.9	98.1	0.0	1.46	0.64	0.77	2.91	4.0	0.003	0.62	0.0	0.06	16.90	0.00	2.304	4.42	3.78	3.0	97.0	0.0	1.26	4.47	0.64	0.78	2.83	14858	958	10	0	0	0	7340	logfile
✔	8XL9	38442	2025-01-24	2023-12-25	2.61	2.72	2.63	2.8	0.006	0.87	0.0	0.06	14.71	0.01	2.283	6.70	0.53	4.8	94.7	0.4	-3.36	0.72	0.77	3.04	2.8	0.004	0.66	0.0	0.05	16.42	0.00	2.578	7.08	2.04	4.4	95.5	0.1	-0.03	1.21	0.74	0.80	3.12	21044	2732	8	0	4	0	0	logfile
✔	8XL3	38436	2025-01-16	2023-12-25	3.02	3.27	3.23	3.3	0.010	1.02	0.0	0.06	11.38	0.01	2.212	7.86	1.54	2.8	96.6	0.6	-0.58	0.62	0.72	1.78	3.3	0.003	0.63	0.0	0.04	15.13	0.00	2.312	6.95	1.64	3.1	96.8	0.1	0.55	0.96	0.64	0.80	2.19	54204	7050	18	0	6	0	0	logfile
✔	8XL1	38434	2025-01-22	2023-12-25	2.57	2.77	2.70	2.8	0.008	0.87	0.0	0.05	11.72	0.01	2.238	2.06	1.29	3.3	96.2	0.4	-0.45	0.59	0.63	2.32	2.8	0.003	0.66	0.0	0.04	15.38	0.00	2.453	7.11	1.48	4.2	95.8	0.0	0.54	1.34	0.68	0.77	2.15	18477	2285	4	0	2	0	0	logfile
✔	8XL4	38437	2025-01-15	2023-12-25	3.38	3.69	3.57	3.6	0.010	1.05	0.0	0.06	11.96	0.01	2.254	8.33	1.98	2.7	96.6	0.7	-0.32	0.70	0.72	1.86	3.6	0.005	0.71	0.0	0.05	14.70	0.00	2.371	9.49	2.13	4.0	95.9	0.1	0.28	0.97	0.74	0.82	1.80	50434	6521	23	0	11	0	0	logfile
✔	8XKS	38424	2025-01-21	2023-12-24	3.2	2.70	—	3.0	0.007	0.95	1.0	0.05	17.83	0.01	2.150	7.39	0.53	7.9	91.3	0.8	-1.35	0.79	0.81	2.07	3.0	0.003	0.62	0.0	0.04	17.51	0.00	2.356	7.86	3.39	7.7	91.8	0.5	-0.05	1.08	0.80	0.83	2.16	67528	8576	25	0	9	0	0	logfile
✔	8XKR	38423	2025-01-19	2023-12-24	3.53	4.31	3.64	3.5	0.004	0.70	0.0	0.04	17.12	0.00	2.205	23.70	0.82	10.3	89.6	0.1	-1.86	0.83	0.77	0.99	3.5	0.003	0.66	0.0	0.04	17.33	0.00	2.554	13.58	3.09	8.4	91.6	0.0	-1.79	0.48	0.84	0.77	0.93	14118	1762	6	0	0	0	0	logfile
✔	8RK5	19260	2025-01-19	2023-12-23	4.54	3.79	4.58	3.8	0.003	0.67	0.0	0.04	12.15	0.01	0.555	21.86	0.00	4.5	95.5	0.0	-1.01	0.67	0.44	—	3.7	0.005	0.89	0.0	0.05	12.93	0.01	1.741	21.02	0.00	8.4	91.6	0.0	-2.59	0.81	0.68	0.46	—	14424	1866	6	0	0	0	0	logfile
✔	8XKi	38418	2025-01-26	2023-12-23	3.2	3.40	3.22	3.4	0.004	0.58	0.0	0.05	19.04	0.00	2.156	6.18	0.30	5.8	94.1	0.1	-2.04	0.75	0.82	2.39	3.3	0.004	0.73	1.0	0.05	16.94	0.00	2.200	4.11	3.54	5.1	94.8	0.1	-1.28	1.02	0.78	0.88	2.14	24431	3121	13	0	32	0	0	logfile
✔	8RK8	19264	2025-01-17	2023-12-23	3.88	3.77	3.91	4.0	0.003	0.55	0.0	0.05	14.93	0.01	0.528	17.22	0.00	3.2	96.8	0.0	0.36	0.71	0.64	0.77	4.0	0.047	1.23	0.0	0.05	17.20	0.01	0.681	23.85	6.07	4.9	95.1	0.0	-0.56	1.23	0.78	0.83	1.23	11226	1512	6	0	0	0	0	logfile
✔	8RKB	19267	2025-01-15	2023-12-23	3.12	2.74	3.26	3.0	0.003	0.50	0.0	0.03	13.64	0.00	0.214	21.59	0.00	4.5	95.4	0.2	2.03	0.65	0.68	0.98	3.0	0.003	0.66	0.0	0.04	17.01	0.01	2.184	6.72	2.71	4.8	95.0	0.2	1.67	0.90	0.76	0.85	2.39	50484	6504	24	0	0	0	0	logfile
✔	8RK4	19259	2025-01-15	2023-12-23	4.74	6.78	6.17	3.7	0.003	0.72	0.0	0.05	11.12	0.00	0.995	21.20	0.00	4.0	95.7	0.3	-1.38	0.94	0.75	—	3.8	0.002	0.67	0.0	0.04	11.73	0.00	2.474	8.31	0.00	7.4	92.4	0.3	-1.77	0.86	0.94	0.77	—	8373	1119	3	0	0	0	0	logfile
✔	8RK9	19265	2025-01-14	2023-12-23	3.95	3.73	3.78	20.0	0.002	0.67	0.0	0.05	15.38	0.00	2.268	15.65	0.00	12.8	87.2	0.0	-3.79	0.16	0.00	1.69	7.3	0.004	0.87	0.0	0.05	17.19	0.01	2.529	18.85	2.88	11.9	88.1	0.0	-3.53	4.07	0.28	0.11	-0.96	6138	816	6	0	0	0	0	logfile
✔	8RKA	19266	2025-01-15	2023-12-23	3.12	3.09	3.24	3.1	0.002	0.49	0.0	0.04	13.37	0.00	2.094	8.66	0.00	4.5	95.5	0.0	2.40	0.74	0.69	0.79	3.0	0.002	0.56	0.0	0.04	16.66	0.00	2.378	6.20	1.91	3.6	96.4	0.0	2.29	1.29	0.83	0.85	2.30	50484	6504	24	0	0	0	0	logfile

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