Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VG1	43197	2025-01-19	2023-12-22	2.48	3.12	2.46	2.9	0.005	0.68	0.0	0.04	26.21	0.00	2.351	0.69	0.51	1.3	98.6	0.1	2.20	0.82	0.85	3.37	2.9	0.006	0.61	0.0	0.04	27.88	0.00	2.465	4.68	1.66	1.8	98.1	0.1	2.35	0.33	0.82	0.85	3.01	14434	930	13	342	1	0	0	logfile
✔	8VFZ	43195	2025-01-20	2023-12-22	4.1	4.63	4.39	4.2	0.005	0.68	0.0	0.04	25.93	0.01	2.063	1.78	1.20	2.0	97.7	0.3	3.06	0.82	0.78	—	4.2	0.004	0.69	0.0	0.04	27.08	0.01	2.420	14.46	0.00	3.4	96.4	0.2	1.04	2.78	0.83	0.82	—	14906	984	12	342	0	0	0	logfile
✔	8VG0	43196	2025-01-18	2023-12-22	3.07	3.70	3.12	3.5	0.005	0.71	0.0	0.04	27.18	0.00	2.082	1.11	0.00	0.9	99.1	0.0	2.77	0.80	0.82	2.89	3.5	0.003	0.56	0.0	0.03	27.83	0.00	2.558	5.83	1.17	1.6	98.4	0.0	3.21	0.28	0.80	0.82	2.62	13042	823	12	318	1	0	0	logfile
✔	8XK1	38413	2025-01-19	2023-12-22	3.31	4.11	3.34	3.6	0.003	0.64	0.0	0.04	15.79	0.00	2.220	12.54	0.68	6.0	93.9	0.2	-0.97	0.86	0.81	1.83	3.6	0.005	0.73	0.0	0.04	16.33	0.00	2.515	13.47	4.35	8.1	91.9	0.0	-1.27	0.38	0.86	0.83	1.89	14312	1777	6	0	0	0	0	logfile
✔	8RK0	19254	2025-01-14	2023-12-22	3.38	4.52	3.57	4.1	0.005	0.92	0.0	0.06	23.31	0.01	2.111	16.47	0.14	12.9	87.1	0.0	-2.41	0.73	0.81	1.31	4.1	0.004	0.86	0.0	0.05	14.21	0.01	2.253	13.34	5.24	12.9	87.1	0.0	-2.32	0.40	0.73	0.82	1.38	6940	812	24	0	46	0	0	logfile
✔	8XK0	38412	2025-01-17	2023-12-22	2.96	3.16	2.95	3.1	0.003	0.60	0.0	0.05	16.44	0.00	2.023	5.87	0.16	6.3	93.4	0.3	-0.69	0.72	0.81	3.31	3.2	0.004	0.62	0.0	0.04	18.34	0.00	2.083	6.20	1.48	5.8	93.7	0.4	-0.60	0.93	0.75	0.86	2.66	6302	692	6	32	2	22	0	logfile
✔	8XK4	38415	2025-01-17	2023-12-22	2.94	3.11	2.95	3.1	0.004	0.63	0.0	0.05	15.22	0.00	1.749	7.92	0.00	3.7	96.0	0.3	-1.05	0.62	0.75	2.72	3.1	0.005	0.69	0.0	0.05	18.27	0.00	1.954	7.66	1.82	4.8	95.2	0.0	-0.77	1.06	0.71	0.82	2.86	6048	689	8	22	3	2	0	logfile
✔	8VFY	43194	2025-01-19	2023-12-22	2.89	3.58	2.87	3.2	0.005	0.68	0.0	0.04	26.42	0.00	2.203	1.42	0.27	1.7	98.1	0.1	2.05	0.88	0.85	2.26	3.2	0.004	0.65	0.0	0.03	27.89	0.00	2.414	7.72	1.35	2.1	97.8	0.1	2.44	1.41	0.88	0.85	1.76	14046	881	11	342	0	0	0	logfile
✔	8XJX	38409	2025-01-17	2023-12-22	2.78	2.97	2.78	3.0	0.003	0.60	0.0	0.04	16.49	0.00	1.742	7.01	0.16	4.5	95.2	0.3	-0.23	0.63	0.73	2.21	3.0	0.003	0.57	0.0	0.04	19.25	0.00	2.039	7.01	3.12	6.0	93.9	0.1	-0.11	1.32	0.71	0.79	1.85	6311	693	6	32	1	27	0	logfile
✔	8VFV	43190	2025-01-24	2023-12-22	3.3	3.51	3.33	3.5	0.007	1.20	1.0	0.06	13.91	0.01	1.702	2.86	0.27	2.3	97.7	0.0	1.14	0.69	0.84	3.76	3.5	0.005	0.90	2.0	0.04	14.04	0.00	2.039	7.94	2.88	3.6	96.4	0.0	0.36	0.48	0.71	0.86	3.42	21240	2607	29	0	72	0	0	logfile
✔	8VG2	43198	2025-01-20	2023-12-22	3.04	3.43	3.01	3.2	0.004	0.63	0.0	0.04	25.72	0.00	2.219	0.78	0.25	1.7	98.2	0.1	2.46	0.86	0.89	3.91	3.2	0.004	0.56	0.0	0.03	27.19	0.00	2.294	3.59	0.99	2.8	97.1	0.1	2.84	0.26	0.87	0.90	3.38	15689	965	12	392	0	0	0	logfile
✔	8XK3	38414	2025-01-17	2023-12-22	2.76	2.99	5.49	3.0	0.004	0.57	0.0	0.05	16.63	0.00	1.758	4.98	0.00	4.2	95.5	0.3	-0.17	0.73	0.80	3.25	3.0	0.004	0.62	0.0	0.04	19.05	0.00	2.001	5.87	2.63	4.5	95.5	0.0	0.21	0.98	0.74	0.86	3.37	6309	692	10	32	3	29	0	logfile
✔	8XJS	38404	2025-01-17	2023-12-22	3.24	3.95	3.26	3.5	0.005	0.71	0.0	0.05	15.75	0.00	2.216	13.52	1.29	5.2	94.6	0.1	-0.54	0.78	0.76	2.35	3.5	0.003	0.59	0.0	0.04	15.77	0.00	2.525	7.03	1.85	4.2	95.7	0.1	-0.18	0.54	0.81	0.85	2.22	11178	1385	5	0	0	0	0	logfile
✔	8VFX	43193	2025-01-20	2023-12-22	2.65	3.26	2.73	3.1	0.005	0.64	0.0	0.04	24.47	0.00	2.067	1.29	0.39	1.8	98.2	0.0	2.04	0.80	0.83	4.19	3.1	0.005	0.60	0.0	0.04	26.62	0.00	2.550	5.21	1.25	2.0	98.0	0.0	2.21	0.45	0.84	0.87	3.43	16124	1222	12	316	0	0	0	logfile
✔	8XJK	38399	2025-01-15	2023-12-21	2.63	2.89	2.67	2.9	0.004	0.43	0.0	0.04	9.76	0.00	2.232	4.34	0.84	1.3	98.7	0.0	1.56	0.70	0.85	4.80	2.9	0.005	0.59	0.0	0.04	15.02	0.00	2.481	4.51	2.43	2.0	98.0	0.0	2.13	1.20	0.68	0.85	4.42	8850	1140	6	0	1	0	0	logfile
✔	8XJN	38402	2025-01-15	2023-12-21	3.06	3.28	3.09	3.2	0.004	0.43	0.0	0.04	10.30	0.00	2.207	4.41	0.85	1.6	98.4	0.0	0.92	0.66	0.82	3.85	3.2	0.003	0.54	0.0	0.04	14.35	0.00	2.439	5.20	1.90	1.9	98.1	0.0	1.92	0.60	0.68	0.84	2.75	8948	1164	6	0	1	0	0	logfile
✔	8XJL	38400	2025-01-15	2023-12-21	2.77	2.89	2.74	2.9	0.004	0.48	0.0	0.04	10.36	0.00	2.225	5.03	1.05	1.1	98.9	0.0	1.28	0.70	0.80	3.93	2.9	0.003	0.53	0.0	0.04	14.55	0.00	2.493	5.42	1.90	1.8	98.2	0.0	2.07	0.58	0.67	0.80	3.21	8846	1140	6	0	1	0	0	logfile
✔	8RJJ	19243	2025-01-15	2023-12-21	3.55	4.74	3.73	4.2	0.005	0.88	0.0	0.06	22.55	0.00	2.086	18.05	0.24	12.0	88.0	0.0	-1.62	0.74	0.81	1.22	4.2	0.003	0.79	0.0	0.05	14.39	0.00	2.306	13.07	3.37	11.5	88.5	0.0	-1.16	0.90	0.74	0.81	1.43	8672	1078	24	0	46	0	0	logfile
✔	8XJM	38401	2025-01-15	2023-12-21	2.85	3.04	2.79	3.0	0.003	0.42	0.0	0.04	10.25	0.00	2.256	4.68	1.05	1.3	98.7	0.0	1.55	0.67	0.82	4.65	3.0	0.003	0.54	0.0	0.04	14.70	0.00	2.499	5.31	2.64	1.7	98.3	0.0	2.19	0.52	0.68	0.83	3.88	8849	1140	6	0	1	0	0	logfile
✔	8XiT	38389	2025-01-14	2023-12-20	3.2	3.65	3.27	3.6	0.003	0.64	0.0	0.04	13.31	0.00	2.287	4.58	0.00	2.0	98.0	0.0	3.41	0.64	0.83	1.90	3.6	0.003	0.66	0.0	0.04	15.21	0.00	2.610	3.92	1.71	1.9	98.1	0.0	4.07	0.91	0.65	0.85	1.48	6002	784	2	0	0	0	0	logfile

• ← previous
• Page 53 of 550
• next →