Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XiT	38389	2025-01-14	2023-12-20	3.2	3.65	3.27	3.6	0.003	0.64	0.0	0.04	13.31	0.00	2.287	4.58	0.00	2.0	98.0	0.0	3.41	0.64	0.83	1.90	3.6	0.003	0.66	0.0	0.04	15.21	0.00	2.610	3.92	1.71	1.9	98.1	0.0	4.07	0.91	0.65	0.85	1.48	6002	784	2	0	0	0	0	logfile
✔	8XJ7	38395	2025-01-23	2023-12-20	2.74	3.10	2.92	3.0	0.005	0.73	1.0	0.04	17.62	0.00	2.027	8.63	1.55	5.1	94.6	0.3	-0.64	0.74	0.84	3.38	3.0	0.003	0.58	0.0	0.04	16.72	0.00	2.047	5.91	1.97	5.0	94.7	0.3	-0.11	0.33	0.73	0.84	2.90	19595	2420	13	6	9	0	0	logfile
✔	8XJ6	38394	2025-01-25	2023-12-20	3.32	3.84	3.59	3.7	0.005	0.75	0.0	0.05	14.55	0.00	2.196	12.87	0.40	3.7	95.8	0.5	-0.25	0.76	0.78	1.67	3.7	0.002	0.63	0.0	0.04	14.98	0.00	2.471	8.62	1.51	3.4	96.3	0.4	0.28	1.22	0.76	0.79	1.29	22688	2807	12	0	8	0	0	logfile
✔	8XJ4	38393	2025-01-14	2023-12-20	3.19	3.42	3.49	3.7	0.005	0.80	0.0	0.05	19.96	0.02	2.221	6.60	1.57	2.8	97.2	0.0	1.21	0.73	0.81	3.19	3.7	0.003	0.69	0.0	0.04	18.16	0.01	2.396	4.52	0.94	3.3	96.7	0.0	1.70	1.18	0.69	0.79	2.32	5820	693	6	0	12	0	0	logfile
✔	8XJ8	38396	2025-01-20	2023-12-20	2.67	2.90	2.75	3.2	0.004	0.73	0.0	0.04	17.64	0.00	2.015	5.62	2.00	4.0	95.3	0.7	-0.63	0.40	0.36	0.23	2.9	0.004	0.67	0.0	0.04	17.73	0.00	2.095	5.14	1.66	4.0	95.5	0.4	0.16	2.11	0.75	0.87	2.95	15904	1957	10	6	6	0	0	logfile
✔	8XiU	38390	2025-01-13	2023-12-20	4.0	4.13	4.19	4.1	0.002	0.55	0.0	0.04	10.64	0.00	2.357	6.37	1.08	1.5	98.5	0.0	2.65	0.48	0.70	—	4.1	0.003	0.78	0.0	0.04	15.51	0.01	2.542	11.43	5.38	1.8	98.2	0.0	1.50	0.50	0.50	0.71	—	2615	348	1	0	0	0	0	logfile
✔	8XiH	38373	2025-01-17	2023-12-19	3.2	3.16	3.22	3.2	0.004	0.66	0.0	0.05	20.10	0.01	2.044	7.28	0.93	9.0	91.0	0.0	-1.04	0.79	0.85	2.16	3.2	0.007	0.69	0.0	0.05	20.09	0.00	1.950	7.51	3.40	10.5	89.5	0.0	-0.83	0.33	0.80	0.86	2.15	11418	1314	7	31	2	0	0	logfile
✔	8Xi2	38362	2025-01-24	2023-12-19	2.6	2.76	2.73	2.8	0.013	1.09	3.0	0.06	21.44	0.01	1.019	23.13	13.19	6.5	93.1	0.4	-2.96	0.54	0.57	2.44	2.8	0.003	0.70	0.0	0.04	20.52	0.00	1.993	11.84	4.06	4.1	95.8	0.0	0.20	1.12	0.57	0.62	2.27	73326	9427	38	258	12	0	0	logfile
✔	8Xi3	38369	2025-01-20	2023-12-19	3.0	2.80	3.02	3.0	0.004	0.71	4.0	0.05	15.95	0.00	2.072	8.09	0.35	6.8	93.2	0.0	0.53	0.59	0.80	1.94	3.0	0.003	0.59	0.0	0.04	17.28	0.00	2.506	6.08	2.13	6.0	94.0	0.1	0.48	0.44	0.67	0.86	1.66	15162	1911	5	0	0	0	0	logfile
✔	8RiZ	19192	2025-01-18	2023-12-19	3.6	3.74	3.37	3.6	0.003	0.60	0.0	0.04	15.38	0.00	2.010	7.70	0.15	2.5	97.5	0.0	0.43	0.60	0.75	2.52	3.6	0.003	0.61	0.0	0.04	15.49	0.00	2.004	6.67	2.70	3.1	96.9	0.0	0.87	0.72	0.61	0.82	2.41	11862	1482	10	1	6	0	0	logfile
✔	8RiA	19185	2025-01-15	2023-12-18	4.4	4.78	4.46	4.6	0.006	1.99	44.0	0.12	13.30	0.01	1.922	29.52	0.21	10.3	89.1	0.6	-1.40	0.66	0.77	—	4.6	0.003	0.82	0.0	0.05	13.36	0.01	2.408	15.07	0.00	7.6	92.1	0.4	-0.20	1.28	0.65	0.75	—	8786	1142	2	0	0	0	0	logfile
✔	8RiF	19186	2025-01-20	2023-12-18	2.79	3.53	2.76	3.1	0.007	0.99	4.0	0.05	15.37	0.01	2.334	1.89	0.87	5.0	94.9	0.2	-1.35	0.84	0.81	2.71	3.1	0.002	0.58	0.0	0.04	16.44	0.00	1.949	3.18	0.85	2.8	97.2	0.0	0.55	1.61	0.85	0.83	2.13	64125	7818	26	106	26	0	0	logfile
✔	8VE8	43168	2025-01-17	2023-12-18	2.8	2.99	2.78	3.0	0.006	0.92	0.0	0.05	13.86	0.01	2.184	2.27	0.00	2.9	97.1	0.0	-0.04	0.63	0.87	6.08	3.0	0.003	0.58	0.0	0.04	13.58	0.00	2.520	3.57	2.69	1.9	98.1	0.0	0.39	1.65	0.62	0.88	5.15	10327	1035	34	0	294	0	0	logfile
✔	8XHV	38355	2025-01-17	2023-12-18	2.81	2.97	2.79	3.0	0.003	0.57	0.0	0.04	15.52	0.00	1.715	6.30	0.00	4.9	95.1	0.0	-0.01	0.65	0.77	3.24	3.0	0.003	0.63	0.0	0.04	18.37	0.00	2.004	5.89	3.75	5.6	94.4	0.0	-0.23	0.54	0.69	0.83	2.56	6199	721	4	14	1	24	0	logfile
✔	8VE3	43163	2025-01-13	2023-12-18	3.3	3.47	3.13	3.4	0.005	0.65	0.0	0.05	11.27	0.00	2.204	11.69	0.00	3.7	96.3	0.0	0.45	0.75	0.78	5.02	3.4	0.003	0.61	0.0	0.05	13.14	0.00	2.575	8.57	4.30	2.8	97.2	0.0	0.23	0.39	0.75	0.79	3.51	3210	466	4	0	0	0	0	logfile
✔	8VE6	43166	2025-01-13	2023-12-18	4.1	4.24	3.95	4.2	0.004	0.67	0.0	0.05	11.95	0.01	2.230	9.76	0.00	3.7	96.3	0.0	-0.17	0.80	0.81	—	4.2	0.002	0.59	0.0	0.05	11.93	0.01	2.614	4.11	0.00	2.0	98.0	0.0	0.06	0.36	0.78	0.79	—	3178	465	5	0	1	0	0	logfile
✔	8VE2	43162	2025-01-13	2023-12-18	3.3	3.54	3.12	3.6	0.002	0.57	0.0	0.05	10.51	0.00	2.295	5.05	0.00	1.1	98.9	0.0	1.60	0.75	0.77	4.10	3.5	0.004	0.61	0.0	0.05	12.87	0.01	2.602	7.15	5.50	2.6	97.4	0.0	-0.10	0.71	0.76	0.79	3.74	3105	465	4	0	0	0	0	logfile
✔	8VE0	43160	2025-01-13	2023-12-18	3.1	2.92	2.99	3.1	0.006	0.62	0.0	0.05	13.41	0.00	2.234	5.96	0.57	0.2	99.8	0.0	1.74	0.73	0.79	4.26	3.1	0.003	0.58	0.0	0.05	15.03	0.00	2.541	7.56	0.85	1.5	98.5	0.0	0.62	0.39	0.73	0.81	3.91	3527	466	6	0	2	0	0	logfile
✔	8VE7	43167	2025-01-13	2023-12-18	4.0	4.19	3.24	4.1	0.003	0.61	0.0	0.04	11.54	0.00	2.139	11.66	0.00	1.7	98.3	0.0	2.80	0.41	0.79	—	4.1	0.003	0.62	0.0	0.04	15.06	0.00	2.517	8.80	2.97	3.1	96.9	0.0	2.86	1.94	0.42	0.83	—	2264	294	1	0	0	0	0	logfile
✔	8RiK	19188	2025-01-16	2023-12-18	3.6	3.54	3.08	3.4	0.003	0.59	0.0	0.04	16.28	0.00	1.971	4.72	0.00	3.5	96.5	0.0	0.58	0.72	0.86	3.61	3.4	0.004	0.61	0.0	0.04	15.68	0.00	1.928	4.45	2.18	2.9	97.1	0.0	1.04	1.22	0.71	0.86	2.96	9353	1172	9	1	4	0	0	logfile

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