Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VE2	43162	2025-01-13	2023-12-18	3.3	3.54	3.12	3.6	0.002	0.57	0.0	0.05	10.51	0.00	2.295	5.05	0.00	1.1	98.9	0.0	1.60	0.75	0.77	4.10	3.5	0.004	0.61	0.0	0.05	12.87	0.01	2.602	7.15	5.50	2.6	97.4	0.0	-0.10	0.71	0.76	0.79	3.74	3105	465	4	0	0	0	0	logfile
✔	8VE0	43160	2025-01-13	2023-12-18	3.1	2.92	2.99	3.1	0.006	0.62	0.0	0.05	13.41	0.00	2.234	5.96	0.57	0.2	99.8	0.0	1.74	0.73	0.79	4.26	3.1	0.003	0.58	0.0	0.05	15.03	0.00	2.541	7.56	0.85	1.5	98.5	0.0	0.62	0.39	0.73	0.81	3.91	3527	466	6	0	2	0	0	logfile
✔	8VE3	43163	2025-01-13	2023-12-18	3.3	3.47	3.13	3.4	0.005	0.65	0.0	0.05	11.27	0.00	2.204	11.69	0.00	3.7	96.3	0.0	0.45	0.75	0.78	5.02	3.4	0.003	0.61	0.0	0.05	13.14	0.00	2.575	8.57	4.30	2.8	97.2	0.0	0.23	0.39	0.75	0.79	3.51	3210	466	4	0	0	0	0	logfile
✔	8VE7	43167	2025-01-13	2023-12-18	4.0	4.19	3.24	4.1	0.003	0.61	0.0	0.04	11.54	0.00	2.139	11.66	0.00	1.7	98.3	0.0	2.80	0.41	0.79	—	4.1	0.003	0.62	0.0	0.04	15.06	0.00	2.517	8.80	2.97	3.1	96.9	0.0	2.86	1.94	0.42	0.83	—	2264	294	1	0	0	0	0	logfile
✔	8VE6	43166	2025-01-13	2023-12-18	4.1	4.24	3.95	4.2	0.004	0.67	0.0	0.05	11.95	0.01	2.230	9.76	0.00	3.7	96.3	0.0	-0.17	0.80	0.81	—	4.2	0.002	0.59	0.0	0.05	11.93	0.01	2.614	4.11	0.00	2.0	98.0	0.0	0.06	0.36	0.78	0.79	—	3178	465	5	0	1	0	0	logfile
✔	8VDZ	43157	2025-01-25	2023-12-18	2.7	2.80	2.60	2.8	0.003	0.46	0.0	0.04	11.96	0.00	2.056	4.30	0.00	0.2	99.8	0.0	3.43	0.72	0.84	4.07	2.8	0.004	0.49	0.0	0.04	16.66	0.00	2.579	4.55	1.54	0.8	99.2	0.0	3.04	0.32	0.73	0.87	3.48	23700	3087	24	0	0	0	0	logfile
✔	8VDR	43156	2025-01-19	2023-12-17	3.7	4.10	3.88	4.1	0.006	0.82	0.0	0.04	15.25	0.00	2.179	14.82	1.34	2.8	97.2	0.0	-0.40	0.81	0.83	1.05	4.1	0.003	0.69	0.0	0.04	16.52	0.00	2.429	9.78	1.27	2.0	98.0	0.0	2.41	0.54	0.81	0.81	0.99	13547	1852	1	0	0	0	0	logfile
✔	8XH6	38342	2025-01-13	2023-12-17	3.52	3.74	3.34	3.8	0.003	0.59	0.0	0.04	14.08	0.00	2.397	7.22	0.00	2.8	97.2	0.0	1.24	0.52	0.75	0.63	3.7	0.003	0.62	0.0	0.03	16.78	0.00	2.467	7.76	2.17	3.5	96.5	0.0	2.74	0.40	0.53	0.77	1.10	2634	322	2	0	0	0	0	logfile
✔	8RHZ	19179	2025-01-20	2023-12-17	3.37	2.52	3.41	2.2	0.007	0.62	0.0	0.04	12.49	0.00	1.789	4.92	0.12	6.5	93.5	0.0	-1.29	0.76	0.78	2.52	2.8	0.002	0.53	0.0	0.03	13.22	0.00	2.056	3.07	1.43	2.4	97.6	0.0	3.52	0.91	0.75	0.78	1.95	15223	2439	6	0	6	0	0	logfile
✔	8XHH	38351	2025-01-18	2023-12-17	2.38	2.23	2.42	1.9	0.003	0.54	0.0	0.04	18.98	0.00	2.190	4.05	4.55	2.6	97.4	0.0	0.11	0.86	0.86	3.79	1.9	0.004	0.57	0.0	0.04	18.44	0.00	2.408	3.19	2.62	2.6	97.4	0.0	0.27	0.26	0.86	0.86	3.77	11841	1470	6	0	12	0	0	logfile
✔	8VDP	43154	2025-01-20	2023-12-17	3.4	3.67	3.49	3.6	0.005	0.74	0.0	0.04	15.35	0.00	2.097	11.85	0.71	2.6	97.4	0.0	2.39	0.76	0.81	1.44	3.6	0.003	0.59	0.0	0.04	16.93	0.00	2.502	9.01	1.75	1.8	98.2	0.0	3.81	1.21	0.76	0.81	1.20	14732	2005	1	0	0	0	0	logfile
✔	8XHF	38349	2025-01-18	2023-12-17	2.39	2.22	2.45	1.9	0.004	0.53	0.0	0.04	19.11	0.00	2.199	4.47	4.42	3.7	96.2	0.1	-0.03	0.85	0.86	3.88	1.9	0.003	0.55	0.0	0.04	18.44	0.00	2.521	3.82	3.33	3.2	96.8	0.0	0.45	0.89	0.85	0.85	3.70	11736	1464	6	0	9	0	0	logfile
✔	8XHE	38348	2025-01-18	2023-12-17	2.64	2.25	2.68	2.0	0.004	0.82	0.0	0.05	19.71	0.00	2.182	6.12	4.80	4.1	95.9	0.0	-0.40	0.83	0.84	3.28	2.0	0.004	0.60	0.0	0.04	18.62	0.00	2.406	4.49	4.10	4.7	95.3	0.0	-0.14	0.26	0.83	0.84	3.29	11912	1466	9	0	20	0	0	logfile
✔	8XHG	38350	2025-01-18	2023-12-17	2.54	2.23	2.57	2.0	0.004	0.95	0.0	0.07	19.67	0.00	2.129	5.85	4.56	3.2	96.8	0.1	-0.01	0.84	0.85	3.74	2.0	0.004	0.62	0.0	0.04	18.29	0.00	2.378	4.06	4.09	2.7	97.2	0.1	0.18	0.89	0.84	0.85	3.51	11939	1468	9	0	20	0	0	logfile
✔	8VDo	43152	2025-01-18	2023-12-16	2.7	2.95	2.74	3.0	0.005	0.72	0.0	0.04	15.24	0.00	2.198	9.48	0.45	0.9	99.1	0.0	1.94	0.61	0.73	2.94	3.0	0.003	0.57	0.0	0.04	16.90	0.00	2.518	7.52	1.73	0.9	99.1	0.0	4.02	0.30	0.59	0.73	2.60	12691	1740	1	0	0	0	0	logfile
✔	8XGM	38328	2025-01-17	2023-12-15	3.29	3.80	3.43	3.7	0.004	0.69	0.0	0.05	17.55	0.00	2.112	10.60	0.36	5.9	94.1	0.0	-0.68	0.58	0.78	2.33	3.7	0.004	0.64	0.0	0.04	17.61	0.00	2.503	7.47	3.94	6.1	93.9	0.0	-0.10	0.38	0.60	0.80	2.24	10319	1302	7	0	1	0	0	logfile
✔	8XGS	38331	2025-01-16	2023-12-15	2.95	3.86	3.10	3.6	0.006	0.61	4.0	0.14	13.20	0.00	2.095	9.16	0.31	6.2	93.7	0.1	-0.31	0.68	0.79	1.63	3.6	0.003	0.69	0.0	0.04	15.80	0.00	2.477	7.60	1.96	7.8	92.2	0.0	-0.31	0.93	0.67	0.80	1.30	8996	1150	7	0	1	0	0	logfile
✔	8XGR	38330	2025-01-16	2023-12-15	3.2	3.95	3.21	3.7	0.003	0.56	0.0	0.04	13.83	0.00	2.126	7.33	0.22	3.7	96.3	0.0	-2.13	0.69	0.74	2.11	3.7	0.003	0.77	0.0	0.05	16.52	0.00	2.478	11.66	2.23	2.9	97.1	0.0	-0.69	0.96	0.69	0.79	0.98	8206	1049	5	0	0	0	0	logfile
✔	8XGo	38329	2025-01-16	2023-12-15	2.68	3.44	2.75	3.2	0.007	0.68	2.0	0.14	13.28	0.00	2.144	9.67	0.21	5.5	94.5	0.0	-0.06	0.72	0.87	3.24	3.2	0.003	0.68	0.0	0.04	16.13	0.00	2.260	7.39	1.96	5.3	94.7	0.0	0.22	1.24	0.71	0.87	2.92	9045	1155	8	0	3	0	0	logfile
✔	8RHH	19176	2025-01-18	2023-12-15	3.0	3.80	2.99	3.5	0.005	0.70	0.0	0.04	16.97	0.00	1.931	8.14	0.15	3.1	96.9	0.0	0.16	0.65	0.82	2.49	3.5	0.003	0.70	0.0	0.04	16.43	0.00	2.031	8.56	2.17	3.1	96.9	0.0	0.67	0.82	0.62	0.85	2.41	12261	1533	11	1	7	0	0	logfile

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