Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VDF	43148	2025-01-13	2023-12-15	3.5	3.66	3.34	3.7	0.004	0.86	0.0	0.05	12.53	0.01	2.224	4.73	0.00	3.5	96.5	0.0	-1.98	0.58	0.63	2.46	3.8	0.004	0.65	0.0	0.04	14.75	0.00	2.515	8.47	3.87	5.7	94.3	0.0	-0.61	0.87	0.61	0.68	2.23	2584	326	3	0	0	0	0	logfile
✔	8VDG	43149	2025-01-13	2023-12-15	3.35	3.57	3.30	3.6	0.006	0.82	0.0	0.05	13.86	0.01	2.274	7.04	0.35	6.5	93.5	0.0	-1.56	0.55	0.79	3.81	3.6	0.003	0.58	0.0	0.04	15.62	0.00	2.577	6.06	0.70	3.9	96.1	0.0	0.77	1.68	0.57	0.83	4.00	2583	323	3	0	0	0	0	logfile
✔	8VDC	43146	2025-01-13	2023-12-14	3.5	3.36	3.50	3.3	0.006	0.75	0.0	0.05	13.43	0.01	2.377	1.34	0.00	2.1	97.9	0.0	-1.87	0.80	0.85	3.14	3.3	0.003	0.53	0.0	0.04	15.19	0.00	2.570	3.06	0.92	1.7	98.3	0.0	0.94	1.47	0.80	0.85	2.64	47064	5736	24	0	0	0	0	logfile
✔	8RH0	19164	2025-01-22	2023-12-14	3.44	3.40	3.32	3.4	0.005	0.62	0.0	0.05	14.04	0.01	2.202	6.74	0.00	1.1	98.9	0.0	0.19	0.79	0.85	3.38	3.4	0.003	0.55	0.0	0.04	15.96	0.00	2.515	4.64	2.64	2.2	97.8	0.0	0.31	0.43	0.79	0.86	3.02	19137	2421	9	0	0	0	0	logfile
✔	8XFT	38309	2025-01-15	2023-12-14	3.24	3.25	2.62	3.2	0.003	0.52	0.0	0.04	10.57	0.00	2.208	6.93	1.54	5.5	94.5	0.0	0.22	0.68	0.83	3.29	3.2	0.003	0.60	0.0	0.04	13.65	0.00	2.407	6.70	2.68	6.1	93.9	0.0	0.29	0.37	0.74	0.87	2.99	8742	1122	4	0	0	0	0	logfile
✔	8RGZ	19163	2025-01-23	2023-12-14	3.27	3.29	3.12	3.3	0.011	1.10	0.0	0.07	13.47	0.01	2.198	12.25	0.19	2.6	97.4	0.0	-0.38	0.72	0.82	3.39	3.3	0.005	0.75	0.0	0.04	15.57	0.00	2.083	9.83	1.65	2.3	97.7	0.0	-0.18	0.50	0.74	0.82	2.94	19545	2442	9	0	0	0	0	logfile
✔	8VD8	43145	2025-01-13	2023-12-14	3.2	2.93	3.17	3.1	0.007	0.81	0.0	0.05	13.73	0.01	2.181	0.80	0.00	1.9	98.1	0.0	-0.87	0.66	0.83	3.38	3.1	0.003	0.54	0.0	0.04	16.93	0.00	2.510	3.18	2.27	2.3	97.7	0.0	0.76	0.70	0.67	0.84	2.96	47880	5832	24	0	0	0	0	logfile
✔	8VDE	43147	2025-01-23	2023-12-14	3.4	3.79	3.62	3.7	0.006	0.86	0.0	0.05	13.48	0.01	2.235	1.81	0.09	3.4	96.6	0.0	-1.45	0.59	0.79	2.60	3.7	0.005	0.69	0.0	0.04	16.60	0.00	2.292	6.81	1.66	3.0	97.0	0.0	0.76	0.88	0.61	0.85	1.85	70177	8643	27	0	0	0	0	logfile
✔	8XFP	38307	2025-01-17	2023-12-14	3.21	4.06	3.43	3.8	0.002	0.49	0.0	0.04	10.04	0.00	2.101	7.35	2.10	5.8	94.2	0.1	-0.41	0.67	0.76	1.92	3.8	0.006	0.76	0.0	0.05	14.61	0.00	2.478	11.52	3.20	7.5	92.5	0.1	-0.90	1.32	0.66	0.76	1.68	10742	1381	6	0	0	0	0	logfile
✔	8VCH	43136	2025-01-14	2023-12-14	2.55	2.23	2.74	3.3	0.004	0.58	0.0	0.04	15.04	0.00	2.260	5.83	0.78	2.2	97.8	0.0	2.09	0.72	0.80	2.33	3.3	0.003	0.52	0.0	0.04	15.93	0.00	2.545	5.03	2.85	1.9	98.1	0.0	3.15	0.30	0.74	0.82	1.67	7614	1012	6	0	2	0	0	logfile
✔	8VCV	43141	2025-01-17	2023-12-14	2.8	3.10	2.90	3.1	0.006	0.93	0.0	0.05	15.78	0.01	2.095	3.17	0.00	2.5	97.5	0.0	-0.59	0.62	0.86	6.05	3.1	0.003	0.60	0.0	0.04	13.34	0.00	2.436	4.91	2.58	1.9	98.1	0.0	0.39	0.36	0.59	0.87	5.04	10466	1035	38	0	311	0	0	logfile
✔	8RH2	19166	2025-01-22	2023-12-14	3.12	3.16	3.04	3.2	0.005	0.58	0.0	0.05	14.37	0.01	2.205	7.05	0.05	1.9	98.1	0.0	0.07	0.78	0.86	3.67	3.2	0.003	0.50	0.0	0.04	15.66	0.00	2.563	5.27	1.66	2.1	97.9	0.0	0.39	0.33	0.81	0.88	3.34	19152	2421	9	0	0	0	0	logfile
✔	8XG1	38311	2025-01-18	2023-12-14	2.53	2.26	2.54	2.0	0.004	0.82	0.0	0.06	19.94	0.00	2.199	5.84	4.51	3.6	96.4	0.0	-0.38	0.84	0.85	2.79	2.0	0.007	0.69	0.0	0.05	18.79	0.00	2.329	4.22	3.65	4.1	95.9	0.0	-0.32	0.23	0.84	0.85	2.97	11941	1464	9	0	20	0	0	logfile
✔	8XFS	38308	2025-01-17	2023-12-14	3.2	3.86	3.31	3.7	0.002	0.52	0.0	0.04	10.31	0.00	2.191	6.68	2.74	5.1	94.8	0.1	0.23	0.70	0.79	2.61	3.7	0.003	0.63	0.0	0.04	13.63	0.00	2.462	6.27	2.41	5.3	94.6	0.1	0.09	0.42	0.67	0.79	2.18	10983	1419	6	0	0	0	0	logfile
✔	8RH1	19165	2025-01-23	2023-12-14	3.45	3.21	3.42	3.4	0.008	0.85	0.0	0.06	13.62	0.01	2.230	10.64	0.00	2.4	97.6	0.0	-0.79	0.76	0.79	2.71	3.3	0.004	0.77	1.0	0.04	15.86	0.00	2.154	7.68	2.68	2.2	97.8	0.0	-0.21	1.45	0.81	0.83	2.40	19560	2442	9	0	0	0	0	logfile
✔	8XFB	38300	2025-01-18	2023-12-13	3.4	2.46	3.42	2.2	0.002	0.51	0.0	0.04	14.02	0.01	2.134	4.34	0.23	2.9	97.1	0.0	0.23	0.76	0.76	2.21	2.2	0.005	0.66	0.0	0.04	16.49	0.00	2.511	5.44	2.44	4.4	95.6	0.0	0.08	1.02	0.79	0.82	2.26	11837	1496	3	0	0	0	0	logfile
✔	8XFC	38301	2025-01-20	2023-12-13	3.89	4.30	3.88	4.0	0.005	0.95	9.0	0.06	14.65	0.00	2.081	13.55	2.28	9.0	90.6	0.4	-3.88	0.74	0.85	1.78	4.0	0.003	0.72	0.0	0.04	15.37	0.00	2.379	7.92	2.44	7.1	92.9	0.0	-1.05	0.57	0.74	0.85	1.18	12371	1626	5	0	2	0	0	logfile
✔	8XEZ	38298	2025-01-20	2023-12-13	3.15	3.75	3.18	3.4	0.004	0.59	0.0	0.04	13.80	0.00	1.985	5.04	0.38	3.7	96.3	0.1	-0.30	0.85	0.83	2.97	3.4	0.003	0.50	0.0	0.04	14.64	0.00	2.379	28.11	0.84	4.3	95.7	0.0	-0.30	0.54	0.85	0.85	2.06	14401	1528	2	0	0	0	2609	logfile
✔	8XFE	38302	2025-01-23	2023-12-13	2.98	3.64	3.04	3.4	0.009	0.97	0.0	0.06	10.56	0.01	2.240	4.39	0.49	5.9	94.1	0.0	-5.62	0.84	0.79	4.15	3.4	0.003	0.73	0.0	0.04	14.60	0.00	2.473	6.60	1.92	3.1	96.9	0.0	-0.31	1.02	0.84	0.83	2.84	20339	2625	5	0	0	0	0	logfile
✔	8XFF	38303	2025-01-24	2023-12-13	3.16	3.83	3.25	3.5	0.012	1.07	0.0	0.07	11.06	0.01	2.224	5.50	0.87	6.1	93.7	0.2	-5.29	0.86	0.81	3.83	3.5	0.004	0.69	0.0	0.04	13.93	0.00	2.503	6.62	1.51	3.9	96.0	0.0	0.17	0.80	0.87	0.87	2.98	21142	2670	5	0	0	0	0	logfile

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