Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XFC	38301	2025-01-20	2023-12-13	3.89	4.30	3.88	4.0	0.005	0.95	9.0	0.06	14.65	0.00	2.081	13.55	2.28	9.0	90.6	0.4	-3.88	0.74	0.85	1.78	4.0	0.003	0.72	0.0	0.04	15.37	0.00	2.379	7.92	2.44	7.1	92.9	0.0	-1.05	0.57	0.74	0.85	1.18	12371	1626	5	0	2	0	0	logfile
✔	8XFE	38302	2025-01-23	2023-12-13	2.98	3.64	3.04	3.4	0.009	0.97	0.0	0.06	10.56	0.01	2.240	4.39	0.49	5.9	94.1	0.0	-5.62	0.84	0.79	4.15	3.4	0.003	0.73	0.0	0.04	14.60	0.00	2.473	6.60	1.92	3.1	96.9	0.0	-0.31	1.02	0.84	0.83	2.84	20339	2625	5	0	0	0	0	logfile
✔	8XEW	38297	2025-01-23	2023-12-13	2.92	3.59	3.02	3.3	0.006	0.88	0.0	0.05	9.87	0.01	2.295	4.00	0.46	3.7	96.2	0.1	-5.39	0.85	0.81	3.88	3.3	0.003	0.69	0.0	0.04	14.12	0.00	2.453	5.81	1.94	2.7	97.3	0.0	0.21	1.25	0.85	0.85	3.00	19631	2530	4	0	0	0	0	logfile
✔	8XFB	38300	2025-01-18	2023-12-13	3.4	2.46	3.42	2.2	0.002	0.51	0.0	0.04	14.02	0.01	2.134	4.34	0.23	2.9	97.1	0.0	0.23	0.76	0.76	2.21	2.2	0.005	0.66	0.0	0.04	16.49	0.00	2.511	5.44	2.44	4.4	95.6	0.0	0.08	1.02	0.79	0.82	2.26	11837	1496	3	0	0	0	0	logfile
✔	8XEZ	38298	2025-01-20	2023-12-13	3.15	3.75	3.18	3.4	0.004	0.59	0.0	0.04	13.80	0.00	1.985	5.04	0.38	3.7	96.3	0.1	-0.30	0.85	0.83	2.97	3.4	0.003	0.50	0.0	0.04	14.64	0.00	2.379	28.11	0.84	4.3	95.7	0.0	-0.30	0.54	0.85	0.85	2.06	14401	1528	2	0	0	0	2609	logfile
✔	8XFF	38303	2025-01-24	2023-12-13	3.16	3.83	3.25	3.5	0.012	1.07	0.0	0.07	11.06	0.01	2.224	5.50	0.87	6.1	93.7	0.2	-5.29	0.86	0.81	3.83	3.5	0.004	0.69	0.0	0.04	13.93	0.00	2.503	6.62	1.51	3.9	96.0	0.0	0.17	0.80	0.87	0.87	2.98	21142	2670	5	0	0	0	0	logfile
✔	8REZ	19113	2025-01-15	2023-12-12	3.3	3.50	3.27	3.5	0.004	0.93	4.0	0.05	15.79	0.01	2.191	15.88	0.52	7.5	91.8	0.7	0.15	0.56	0.75	0.85	3.5	0.003	0.63	0.0	0.04	16.88	0.00	2.385	8.75	1.97	5.9	93.9	0.2	1.07	0.53	0.57	0.79	0.90	8802	1144	2	0	0	0	0	logfile
✔	8XEK	38292	2025-01-17	2023-12-12	2.9	3.42	2.88	3.2	0.004	0.58	0.0	0.04	14.01	0.00	2.081	4.16	0.22	2.9	97.1	0.0	0.38	0.85	0.90	4.28	3.2	0.003	0.55	0.0	0.04	14.97	0.00	2.161	17.63	1.65	3.6	96.4	0.0	0.35	0.77	0.84	0.90	3.68	10130	1073	2	0	0	0	1840	logfile
✔	8RFJ	19125	2025-01-26	2023-12-12	3.18	3.67	3.38	2.1	0.003	0.55	0.0	0.04	16.98	0.00	2.105	10.24	0.00	2.0	98.0	0.0	0.80	0.89	0.81	2.36	2.1	0.005	0.66	0.0	0.04	18.33	0.00	2.486	10.47	1.38	3.3	96.7	0.0	0.46	1.17	0.90	0.84	2.25	24679	2877	13	129	1	0	0	logfile
✔	8VB4	43112	2025-01-18	2023-12-12	2.98	3.30	3.28	3.4	0.002	0.50	0.0	0.04	12.55	0.00	0.748	7.47	0.00	2.3	97.7	0.0	1.19	0.59	0.82	2.48	3.4	0.002	0.55	0.0	0.04	15.96	0.01	1.831	2.22	1.15	2.7	97.3	0.0	1.63	1.51	0.58	0.85	1.94	60348	7848	24	0	0	0	0	logfile
✔	8RFB	19117	2025-01-13	2023-12-12	4.01	4.26	4.04	4.2	0.015	1.68	0.0	0.10	11.24	0.01	2.144	5.97	2.04	2.7	97.3	0.0	0.42	0.73	0.77	—	4.2	0.003	0.66	0.0	0.04	13.35	0.00	2.489	8.51	0.00	3.2	96.8	0.0	0.23	0.95	0.71	0.78	—	4632	597	1	0	0	0	0	logfile
✔	8VB8	43116	2025-01-15	2023-12-12	3.0	3.58	2.96	3.4	0.004	0.66	0.0	0.05	21.08	0.01	2.019	7.50	4.88	5.2	94.6	0.2	-1.07	0.84	0.89	2.80	3.4	0.004	0.90	0.0	0.04	20.74	0.00	1.025	5.88	2.26	5.0	94.8	0.2	-0.07	0.30	0.83	0.89	2.63	8511	951	4	37	3	0	0	logfile
✔	8XEi	38290	2025-01-20	2023-12-12	2.9	3.45	2.89	3.2	0.003	0.59	0.0	0.04	14.19	0.01	1.860	4.19	0.65	4.1	95.7	0.1	-0.16	0.86	0.89	3.65	3.2	0.006	0.60	0.0	0.04	14.99	0.01	2.183	23.87	1.66	5.9	94.0	0.1	-0.33	0.43	0.85	0.90	3.40	15142	1600	2	0	0	0	2751	logfile
✔	8XEN	38294	2025-01-19	2023-12-12	3.2	3.68	3.18	3.4	0.004	0.63	0.0	0.04	13.69	0.00	1.970	4.71	0.31	5.3	94.5	0.2	-0.67	0.82	0.80	3.01	3.4	0.003	0.52	0.0	0.04	14.98	0.00	2.277	29.24	1.53	5.6	94.3	0.1	-0.77	1.03	0.83	0.84	2.31	14359	1521	2	0	0	0	2606	logfile
✔	8RFG	19119	2025-01-24	2023-12-12	3.35	3.85	3.48	3.7	0.004	0.76	0.0	0.04	19.69	0.00	2.000	10.70	0.14	8.9	90.3	0.8	-1.57	0.82	0.82	2.28	3.7	0.003	0.66	0.0	0.04	15.13	0.00	2.470	8.54	0.77	7.5	91.8	0.7	-0.75	0.39	0.79	0.82	1.91	21879	2765	5	0	27	2	0	logfile
✔	8RF9	19116	2025-01-24	2023-12-12	3.28	3.88	3.54	3.8	0.003	0.70	0.0	0.04	14.24	0.00	2.070	10.54	0.14	9.5	89.4	1.1	-0.95	0.76	0.84	2.02	3.8	0.003	0.67	0.0	0.04	15.49	0.00	2.495	7.76	1.18	9.4	89.8	0.8	-0.59	1.33	0.73	0.83	1.91	20646	2642	1	0	0	0	0	logfile
✔	8RF0	19114	2025-01-24	2023-12-12	3.4	4.01	3.68	3.9	0.004	0.73	1.0	0.05	16.92	0.01	2.171	10.52	0.45	8.8	90.3	0.9	-1.04	0.70	0.59	0.72	3.9	0.003	0.75	0.0	0.04	15.98	0.01	2.349	9.57	1.35	8.6	90.8	0.7	-0.90	1.02	0.76	0.74	0.92	21922	2780	4	0	19	0	0	logfile
✔	8XEL	38293	2025-01-17	2023-12-12	2.8	3.35	2.85	10.0	0.012	1.77	5.0	0.10	13.06	0.02	2.551	0.00	0.88	4.4	95.2	0.4	-0.52	0.19	0.01	0.17	2.9	0.004	0.79	0.0	0.05	16.62	0.01	2.224	75.69	4.40	9.0	91.0	0.0	-2.00	1.49	0.34	0.33	0.07	10119	1071	2	0	0	0	1837	logfile
✔	8XEJ	38291	2025-01-14	2023-12-12	3.66	3.95	3.64	3.9	0.004	0.84	0.0	0.04	13.95	0.00	2.222	7.98	3.64	4.9	95.1	0.0	0.15	0.66	0.77	1.42	3.9	0.003	0.73	0.0	0.04	15.82	0.00	2.452	6.72	4.68	4.0	96.0	0.0	1.52	2.84	0.70	0.80	1.68	7153	916	5	0	1	0	0	logfile
✔	8VBX	43127	2025-01-14	2023-12-12	3.23	3.55	3.28	3.5	0.002	0.56	0.0	0.04	12.54	0.00	0.358	7.55	0.00	4.4	95.6	0.0	-1.42	0.63	0.85	3.54	3.5	0.006	0.82	6.0	0.05	14.97	0.01	0.947	3.27	2.88	8.0	91.9	0.1	-1.61	0.48	0.63	0.87	3.10	50010	6510	24	0	0	0	0	logfile

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