Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8VBX	43127	2025-01-14	2023-12-12	3.23	3.55	3.28	3.5	0.002	0.56	0.0	0.04	12.54	0.00	0.358	7.55	0.00	4.4	95.6	0.0	-1.42	0.63	0.85	3.54	3.5	0.006	0.82	6.0	0.05	14.97	0.01	0.947	3.27	2.88	8.0	91.9	0.1	-1.61	0.48	0.63	0.87	3.10	50010	6510	24	0	0	0	0	logfile
✔	8RFE	19118	2025-01-24	2023-12-12	3.8	4.63	3.96	4.1	0.003	0.61	0.0	0.04	16.60	0.00	2.148	11.81	0.14	7.6	91.6	0.8	-0.82	0.84	0.80	0.80	4.1	0.003	0.66	0.0	0.04	14.50	0.00	2.472	10.87	0.50	7.8	91.5	0.7	-0.43	0.34	0.85	0.83	0.91	21776	2765	3	0	12	0	0	logfile
✔	8XDM	38281	2025-01-15	2023-12-11	2.45	2.66	2.51	2.6	0.003	0.67	0.0	0.04	17.96	0.00	2.238	5.36	6.52	2.1	97.9	0.0	1.66	0.66	0.82	2.67	2.6	0.004	0.73	0.0	0.05	17.26	0.00	2.401	3.69	3.85	2.1	97.9	0.0	1.37	1.95	0.69	0.86	3.50	8746	1109	6	0	6	0	0	logfile
✔	8VAE	43089	2025-01-14	2023-12-11	3.7	3.91	3.77	3.8	0.003	0.68	0.0	0.04	15.27	0.00	2.251	9.01	0.00	2.9	97.1	0.0	1.75	0.83	0.81	1.63	3.8	0.003	0.68	0.0	0.04	17.00	0.00	2.548	9.12	1.97	3.1	96.9	0.0	1.97	0.77	0.83	0.82	1.77	4653	581	2	0	3	0	0	logfile
✔	8VAC	43088	2025-01-14	2023-12-11	3.4	3.62	3.46	3.6	0.012	0.79	0.0	0.05	15.87	0.00	2.232	11.25	0.00	5.7	94.3	0.0	1.17	0.79	0.83	1.66	3.6	0.003	0.60	0.0	0.04	16.73	0.00	2.587	7.57	2.76	4.3	95.7	0.0	1.89	0.36	0.79	0.85	1.03	4669	581	2	0	1	0	0	logfile
✔	8VAA	43087	2025-01-21	2023-12-11	3.58	4.21	3.18	3.4	0.003	0.64	0.0	0.04	16.30	0.00	1.978	5.87	0.26	4.2	95.8	0.0	0.05	0.79	0.78	2.07	3.4	0.002	0.57	0.0	0.04	16.36	0.00	1.938	3.88	0.53	3.3	96.7	0.0	2.08	2.73	0.87	0.88	2.03	67770	4390	30	0	20	0	33030	logfile
✔	8XEF	38288	2025-01-14	2023-12-11	4.41	6.10	4.46	5.4	0.004	1.00	0.0	0.06	12.95	0.01	1.886	13.27	0.00	9.9	90.0	0.2	-3.14	0.77	0.76	—	5.4	0.004	0.78	0.0	0.05	13.00	0.01	2.368	21.43	0.00	10.8	89.0	0.2	-2.99	0.92	0.78	0.79	—	5007	649	5	0	0	0	0	logfile
✔	8VAo	43097	2025-01-23	2023-12-11	2.8	2.12	2.86	2.0	0.003	0.51	0.0	0.04	13.27	0.01	1.962	2.86	0.00	2.3	97.7	0.0	-0.67	0.76	0.78	4.19	2.0	0.004	0.59	0.0	0.04	16.47	0.00	2.373	3.45	2.49	2.8	97.2	0.0	1.06	1.29	0.78	0.80	3.84	20154	1311	6	0	9	0	9942	logfile
✔	8VAV	43106	2025-01-22	2023-12-11	3.13	3.89	3.26	3.5	0.005	0.80	0.0	0.05	27.59	0.01	2.286	4.29	0.00	1.7	98.3	0.0	1.19	0.60	0.80	2.71	3.5	0.003	0.59	0.0	0.03	12.21	0.00	2.355	5.52	1.46	2.0	98.0	0.0	1.89	0.69	0.62	0.82	2.80	18532	2096	16	0	64	0	0	logfile
✔	8VAF	43090	2025-01-14	2023-12-11	3.5	3.70	3.53	3.6	0.003	0.59	0.0	0.04	15.27	0.00	2.216	6.11	0.00	5.2	94.8	0.0	1.47	0.81	0.84	2.47	3.6	0.003	0.55	0.0	0.04	16.96	0.00	2.551	4.36	1.38	5.0	95.0	0.0	1.55	0.38	0.81	0.85	2.30	4623	581	1	0	0	0	0	logfile
✔	8XE9	38283	2025-01-13	2023-12-11	3.3	4.04	3.24	3.8	0.003	0.56	0.0	0.04	13.28	0.01	2.265	6.71	0.00	7.5	92.5	0.0	-2.10	0.64	0.81	2.76	3.8	0.003	0.67	0.0	0.04	15.78	0.00	2.514	7.65	3.40	7.5	92.5	0.0	-1.12	0.92	0.61	0.85	2.69	3266	420	3	0	0	0	0	logfile
✔	8VAT	43102	2025-01-22	2023-12-11	3.2	3.36	3.19	3.4	0.005	0.72	0.0	0.04	16.28	0.00	1.709	12.31	0.00	4.6	95.3	0.1	0.21	0.70	0.78	1.80	3.4	0.003	0.64	0.0	0.04	17.98	0.00	1.481	9.98	1.95	3.7	96.2	0.1	0.90	0.97	0.70	0.80	1.60	19423	2393	13	31	13	0	0	logfile
✔	8XDL	38280	2025-01-15	2023-12-11	2.44	2.66	2.49	2.6	0.004	0.77	0.0	0.04	18.26	0.01	2.286	4.95	6.74	2.6	97.4	0.0	1.09	0.70	0.83	3.76	2.6	0.004	0.74	0.0	0.05	17.48	0.01	2.449	3.80	2.57	2.3	97.7	0.0	1.19	0.53	0.70	0.86	3.55	8746	1109	6	0	6	0	0	logfile
✔	8VA2	43085	2025-01-19	2023-12-10	4.5	4.40	4.45	4.3	0.006	0.87	0.0	0.05	15.73	0.00	1.868	13.57	0.00	6.5	93.5	0.0	-0.34	0.77	0.78	—	4.3	0.003	0.69	0.0	0.05	14.98	0.00	1.957	11.50	0.00	4.5	95.5	0.0	0.12	1.95	0.77	0.78	—	13430	1677	8	2	4	0	0	logfile
✔	8XD1	38262	2025-01-13	2023-12-10	2.96	3.13	1.04	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.002	0.55	0.0	0.04	17.32	0.01	2.496	5.77	0.88	2.9	97.1	0.0	1.60	0.46	0.42	0.88	2.94	3307	416	2	0	1	9	0	logfile
✔	8XD6	38267	2025-01-13	2023-12-10	2.79	2.93	1.04	2.9	0.009	1.12	0.0	0.06	16.23	0.01	2.369	7.03	3.51	3.4	96.6	0.0	0.89	0.48	0.90	4.52	2.9	0.003	0.51	0.0	0.04	16.24	0.00	2.506	5.23	1.17	1.4	98.6	0.0	1.65	0.39	0.47	0.92	4.70	3402	419	2	0	4	44	0	logfile
✔	8XD0	38261	2025-01-13	2023-12-10	2.83	3.06	1.35	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.003	0.53	0.0	0.04	17.81	0.00	2.557	5.56	0.88	2.9	96.9	0.2	1.58	0.36	0.46	0.90	3.72	3357	417	2	0	2	14	0	logfile
✔	8XDA	38271	2025-01-14	2023-12-10	3.0	3.46	3.00	3.4	0.008	0.86	3.0	0.06	12.75	0.01	2.291	10.69	0.98	3.1	96.9	0.0	0.56	0.58	0.79	3.43	3.4	0.003	0.58	0.0	0.04	14.05	0.00	2.586	9.72	1.71	2.6	97.4	0.0	1.90	0.47	0.64	0.84	2.95	7620	984	9	0	6	6	0	logfile
✔	8XCS	38253	2025-01-13	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.002	0.51	0.0	0.04	16.28	0.00	2.481	4.51	2.35	2.2	97.8	0.0	1.71	0.89	0.49	0.92	5.39	3360	418	2	0	3	20	0	logfile
✔	8XDF	38276	2025-01-15	2023-12-10	2.4	2.35	2.23	2.6	0.005	0.57	0.0	0.04	14.78	0.01	2.262	6.60	0.00	2.6	97.4	0.0	1.82	0.65	0.87	3.50	2.6	0.003	0.54	0.0	0.04	14.31	0.01	2.618	5.86	1.61	3.2	96.8	0.0	2.62	0.34	0.62	0.88	3.30	8025	1050	3	0	0	0	0	logfile

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