Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XCW	38257	2025-01-13	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.002	0.50	0.0	0.04	16.93	0.00	2.442	4.83	0.88	2.7	97.3	0.0	1.93	0.41	0.48	0.91	3.23	3347	416	2	0	2	17	0	logfile
✔	8XD6	38267	2025-01-13	2023-12-10	2.79	2.93	1.04	2.9	0.009	1.12	0.0	0.06	16.23	0.01	2.369	7.03	3.51	3.4	96.6	0.0	0.89	0.48	0.90	4.52	2.9	0.003	0.51	0.0	0.04	16.24	0.00	2.506	5.23	1.17	1.4	98.6	0.0	1.65	0.39	0.47	0.92	4.70	3402	419	2	0	4	44	0	logfile
✔	8XCT	38254	2025-01-13	2023-12-10	2.87	3.06	—	3.0	0.009	1.09	0.0	0.06	16.21	0.01	2.278	4.37	5.00	2.2	97.8	0.0	1.25	0.45	0.88	4.06	3.0	0.003	0.53	0.0	0.04	16.43	0.00	2.474	4.22	0.88	2.9	96.9	0.2	1.65	1.73	0.45	0.90	4.16	3358	417	2	0	1	28	0	logfile
✔	8XCo	38249	2025-01-13	2023-12-10	2.64	2.79	—	2.8	0.009	1.13	0.0	0.06	17.49	0.01	2.424	6.49	6.78	2.4	97.6	0.0	0.92	0.48	0.88	4.70	2.7	0.002	0.50	0.0	0.04	17.21	0.00	2.446	4.08	0.88	3.1	96.9	0.0	2.03	0.55	0.50	0.93	4.48	3335	416	2	0	1	14	0	logfile
✔	8XD0	38261	2025-01-13	2023-12-10	2.83	3.06	1.35	3.0	0.009	1.13	0.0	0.07	16.46	0.01	2.449	4.66	2.35	3.1	96.9	0.0	1.32	0.46	0.88	3.52	3.0	0.003	0.53	0.0	0.04	17.81	0.00	2.557	5.56	0.88	2.9	96.9	0.2	1.58	0.36	0.46	0.90	3.72	3357	417	2	0	2	14	0	logfile
✔	8XD1	38262	2025-01-13	2023-12-10	2.96	3.13	1.04	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.002	0.55	0.0	0.04	17.32	0.01	2.496	5.77	0.88	2.9	97.1	0.0	1.60	0.46	0.42	0.88	2.94	3307	416	2	0	1	9	0	logfile
✔	8XCV	38256	2025-01-13	2023-12-10	2.83	3.05	—	3.0	0.007	0.80	0.0	0.05	16.46	0.01	2.441	4.86	2.95	1.5	98.5	0.0	1.22	0.48	0.89	4.82	3.0	0.002	0.49	0.0	0.04	15.81	0.00	2.549	5.01	0.29	2.7	97.3	0.0	1.92	0.85	0.48	0.91	4.15	3310	415	2	0	1	7	0	logfile
✔	8XCS	38253	2025-01-13	2023-12-10	2.63	2.77	1.03	2.7	0.009	1.10	0.0	0.06	16.41	0.01	2.381	7.66	4.69	3.8	96.2	0.0	0.58	0.47	0.89	4.80	2.7	0.002	0.51	0.0	0.04	16.28	0.00	2.481	4.51	2.35	2.2	97.8	0.0	1.71	0.89	0.49	0.92	5.39	3360	418	2	0	3	20	0	logfile
✔	8XD9	38270	2025-01-14	2023-12-10	2.8	3.48	2.75	3.3	0.005	0.74	0.0	0.05	12.44	0.01	2.428	9.02	1.10	2.7	97.3	0.0	0.54	0.65	0.85	3.34	3.3	0.003	0.66	0.0	0.04	14.26	0.00	2.480	7.78	0.49	2.9	97.1	0.0	2.50	0.38	0.66	0.86	2.50	7599	993	3	0	0	0	0	logfile
✔	8XCJ	38245	2025-01-23	2023-12-09	2.98	3.11	2.98	3.1	0.004	0.69	6.0	0.05	18.49	0.00	2.138	9.20	6.95	3.3	96.1	0.6	-0.54	0.72	0.87	3.86	3.1	0.003	0.58	0.0	0.05	18.27	0.00	2.480	6.98	4.44	3.9	95.8	0.3	-0.50	0.23	0.75	0.88	4.12	19809	2526	6	0	0	0	0	logfile
✔	8XCK	38246	2025-01-17	2023-12-09	2.75	2.91	2.75	2.9	0.016	1.66	4.0	0.10	18.70	0.01	2.194	9.21	5.40	11.4	88.1	0.5	-1.67	0.79	0.86	3.52	2.9	0.003	0.72	0.0	0.05	18.53	0.01	2.503	7.61	3.26	10.6	89.4	0.0	-1.25	0.35	0.75	0.83	3.41	10671	1395	6	0	0	0	0	logfile
✔	8XCN	38248	2025-01-15	2023-12-09	3.02	3.72	3.09	3.7	0.030	1.66	0.0	0.49	18.74	0.01	1.241	23.11	2.15	5.4	94.6	0.0	-0.97	0.73	0.74	1.11	3.6	0.004	1.13	0.0	0.06	17.51	0.01	1.621	13.99	3.50	4.5	95.4	0.1	0.42	1.17	0.74	0.83	2.21	8601	1089	5	0	6	0	0	logfile
✔	8XCi	38244	2025-01-16	2023-12-09	3.57	3.94	3.60	3.9	0.017	2.34	11.0	0.11	19.30	0.01	1.529	43.22	14.39	14.1	82.6	3.3	-3.74	0.52	0.82	0.99	3.9	0.003	0.74	0.0	0.04	18.00	0.01	2.379	11.82	4.48	7.1	92.4	0.4	-1.78	0.52	0.50	0.73	1.74	8842	1143	3	0	0	0	0	logfile
✔	8XCM	38247	2025-01-15	2023-12-09	3.08	3.84	3.13	3.7	0.030	1.33	0.0	0.46	17.72	0.01	2.118	18.72	0.68	4.8	95.2	0.0	-0.04	0.75	0.83	2.38	3.7	0.004	1.07	0.0	0.06	17.71	0.00	1.804	12.56	4.18	4.6	95.4	0.0	0.39	0.46	0.74	0.83	2.36	8605	1089	5	0	6	0	0	logfile
✔	8XCC	38239	2025-01-14	2023-12-08	3.2	3.79	3.20	3.6	0.004	0.58	0.0	0.04	19.55	0.00	2.197	6.07	0.21	3.0	97.0	0.0	1.81	0.79	0.87	3.09	3.6	0.004	0.54	0.0	0.04	19.79	0.00	2.553	4.86	3.38	2.3	97.7	0.0	2.62	0.21	0.80	0.87	2.85	5617	546	4	56	0	0	0	logfile
✔	8XCA	38238	2025-01-14	2023-12-08	3.1	3.84	3.13	3.5	0.002	0.53	0.0	0.03	21.67	0.00	2.212	7.23	0.17	2.7	97.3	0.0	1.11	0.79	0.87	3.07	3.5	0.002	0.53	0.0	0.03	21.54	0.00	2.429	6.18	3.09	2.7	97.3	0.0	1.37	0.73	0.79	0.86	3.20	7106	668	4	79	0	0	0	logfile
✔	8XCD	38240	2025-01-14	2023-12-08	3.49	3.79	3.48	3.9	0.005	0.66	0.0	0.04	18.64	0.01	2.156	9.36	0.32	4.3	95.7	0.0	0.81	0.56	0.68	1.45	3.8	0.003	0.61	0.0	0.04	16.18	0.00	2.588	8.13	4.60	3.3	96.7	0.0	0.98	1.22	0.62	0.79	1.24	5626	727	4	0	2	0	0	logfile
✔	8RDU	19075	2025-01-19	2023-12-08	2.3	2.53	—	2.6	0.006	0.89	0.0	0.06	19.92	0.01	1.739	3.45	0.77	2.7	97.3	0.0	-1.13	0.69	0.77	4.20	2.6	0.003	0.61	0.0	0.04	21.19	0.00	1.994	6.63	1.30	2.2	97.8	0.0	1.61	0.87	0.68	0.79	2.98	61430	6103	71	526	33	862	0	logfile
✔	8RDY	19078	2025-01-17	2023-12-08	3.33	3.51	3.40	3.5	0.003	0.50	0.0	0.04	17.79	0.00	1.901	3.46	0.33	3.6	96.4	0.0	1.19	0.66	0.84	2.04	3.5	0.002	0.50	0.0	0.04	17.66	0.00	1.921	2.28	1.00	3.3	96.7	0.0	1.27	0.19	0.66	0.84	1.96	10954	680	3	0	2	0	5450	logfile
✔	8V9D	43071	2025-01-21	2023-12-07	2.9	3.14	2.91	3.2	0.003	0.48	0.0	0.04	11.62	0.00	1.943	6.00	0.00	3.0	97.0	0.0	0.39	0.72	0.87	3.80	3.2	0.003	0.59	0.0	0.04	14.18	0.00	2.606	3.89	1.42	3.3	96.7	0.0	1.49	0.45	0.71	0.89	2.80	16683	2221	14	0	0	80	0	logfile

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