Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8RCR	19057	2025-01-23	2023-12-07	3.6	3.95	3.77	3.8	0.012	0.80	0.0	0.05	14.08	0.00	1.903	14.64	0.00	3.7	96.2	0.1	1.54	0.62	0.74	1.59	3.8	0.003	0.74	0.0	0.04	15.47	0.00	2.495	11.23	1.86	3.8	96.0	0.1	1.98	0.44	0.62	0.75	1.17	19936	2420	8	0	12	0	0	logfile
✔	8V9D	43071	2025-01-21	2023-12-07	2.9	3.14	2.91	3.2	0.003	0.48	0.0	0.04	11.62	0.00	1.943	6.00	0.00	3.0	97.0	0.0	0.39	0.72	0.87	3.80	3.2	0.003	0.59	0.0	0.04	14.18	0.00	2.606	3.89	1.42	3.3	96.7	0.0	1.49	0.45	0.71	0.89	2.80	16683	2221	14	0	0	80	0	logfile
✔	8V93	43048	2025-01-14	2023-12-07	3.12	3.33	3.16	3.4	0.005	0.98	0.0	0.06	13.54	0.01	2.308	7.40	0.00	6.0	93.5	0.5	-1.91	0.52	0.47	0.68	3.3	0.005	0.81	0.0	0.05	15.64	0.01	2.480	19.92	3.12	9.1	90.7	0.2	-1.60	2.29	0.65	0.68	2.68	4686	614	5	0	0	0	0	logfile
✔	8XBW	38231	2025-01-13	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.005	1.25	0.0	0.06	23.77	0.01	2.512	25.80	2.48	1.7	98.3	0.0	-1.70	2.03	0.81	0.82	0.77	2671	242	5	36	0	0	0	logfile
✔	8XC1	38236	2025-01-19	2023-12-07	2.21	2.60	2.41	2.6	0.004	1.19	21.0	0.09	24.88	0.01	1.869	10.58	2.05	3.9	96.1	0.0	1.19	0.63	0.81	3.49	2.6	0.005	0.71	0.0	0.04	21.14	0.00	2.264	6.09	3.07	5.1	94.9	0.0	0.88	1.14	0.62	0.81	3.36	13542	1320	12	120	22	0	0	logfile
✔	8XBS	38227	2025-01-17	2023-12-07	2.21	2.40	2.28	2.5	0.006	1.17	24.0	0.08	22.13	0.01	2.189	8.39	3.17	3.6	96.4	0.0	1.61	0.70	0.86	4.39	2.5	0.003	0.64	0.0	0.04	17.69	0.00	2.538	4.91	2.64	3.2	96.8	0.0	2.02	1.12	0.70	0.87	4.35	10658	1282	8	0	22	0	0	logfile
✔	8RC4	19047	2025-01-26	2023-12-06	3.1	4.01	2.99	7.5	0.005	0.80	0.0	0.05	15.58	0.01	2.017	2.88	0.10	3.9	96.0	0.0	0.73	0.69	0.31	-0.03	2.5	0.005	0.80	1.0	0.04	16.41	0.00	1.679	19.06	1.32	4.1	95.9	0.0	0.24	1.25	0.85	0.73	0.55	78273	11105	18	0	4	0	0	logfile
✔	8RC6	19049	2025-01-18	2023-12-06	3.3	2.08	3.27	3.4	0.005	0.59	0.0	0.04	12.31	0.00	1.989	6.15	0.58	1.4	98.4	0.1	-1.45	0.77	0.77	3.60	3.4	0.003	0.57	0.0	0.04	15.62	0.00	2.416	5.91	2.18	3.6	96.2	0.1	-0.41	0.68	0.76	0.77	3.10	12194	780	6	0	0	0	6076	logfile
✔	8V8S	43044	2025-01-14	2023-12-06	2.2	2.62	2.16	2.5	0.002	0.47	0.0	0.04	14.02	0.00	2.203	6.43	0.00	3.2	96.8	0.0	0.33	0.63	0.78	4.97	2.5	0.003	0.60	0.0	0.04	14.48	0.00	2.645	5.60	2.16	3.6	96.4	0.0	2.00	1.59	0.64	0.78	4.14	6717	892	8	0	0	101	0	logfile
✔	8XB8	38214	2025-01-14	2023-12-06	3.4	3.65	3.41	3.6	0.003	0.50	0.0	0.05	16.09	0.00	2.241	12.12	0.30	2.0	98.0	0.0	1.47	0.75	0.78	3.23	3.6	0.003	0.51	0.0	0.05	16.86	0.00	2.524	10.80	2.99	2.6	97.4	0.0	1.51	0.25	0.76	0.80	2.99	50400	5940	60	0	0	0	0	logfile
✔	8RBZ	19040	2025-01-24	2023-12-05	3.7	3.61	3.88	3.2	0.004	0.85	0.0	0.05	13.32	0.01	2.184	2.46	0.25	3.5	96.5	0.0	1.71	0.79	0.69	1.36	3.3	0.003	0.70	0.0	0.04	15.20	0.00	2.070	8.93	1.72	3.6	96.4	0.0	1.30	1.22	0.80	0.70	1.29	74102	10096	23	0	13	0	0	logfile
✔	8RC1	19042	2025-01-19	2023-12-05	3.7	4.09	3.53	3.9	0.002	0.47	0.0	0.04	11.15	0.00	1.994	5.65	1.71	2.3	97.7	0.0	1.63	0.75	0.85	3.10	3.9	0.002	0.56	0.0	0.04	13.33	0.00	2.007	6.96	1.79	2.3	97.7	0.0	1.46	0.48	0.74	0.84	2.47	13235	1722	9	2	93	0	0	logfile
✔	8XAY	38207	2025-01-14	2023-12-05	2.81	3.06	2.92	3.1	0.005	0.83	1.0	0.05	17.84	0.01	1.996	6.40	0.29	2.5	97.5	0.0	-1.94	0.75	0.85	3.21	3.1	0.004	0.56	0.0	0.04	18.20	0.00	1.888	6.86	3.27	2.5	97.5	0.0	-0.05	0.45	0.71	0.86	3.37	48987	5887	26	26	12	0	0	logfile
✔	8XAW	38205	2025-01-14	2023-12-05	2.73	2.98	2.85	3.0	0.005	0.81	1.0	0.05	18.55	0.01	2.039	6.68	0.60	2.9	97.1	0.0	-2.09	0.73	0.81	2.86	3.0	0.004	0.57	0.0	0.04	18.55	0.00	1.918	8.41	3.67	2.8	97.2	0.0	-0.15	1.08	0.65	0.81	3.39	48983	5887	26	26	12	0	0	logfile
✔	8RC3	19046	2025-01-23	2023-12-05	3.0	2.42	3.04	3.1	0.004	0.57	0.0	0.04	18.29	0.00	2.075	10.06	0.00	2.2	97.8	0.0	0.49	0.86	0.86	3.39	3.1	0.005	0.78	1.0	0.04	19.12	0.00	2.290	8.71	1.41	2.6	97.4	0.0	0.33	0.32	0.86	0.86	3.14	19893	2297	12	112	1	0	0	logfile
✔	8V8B	43033	2025-01-15	2023-12-05	2.4	2.48	2.49	2.5	0.005	0.87	0.0	0.06	13.66	0.01	2.319	1.00	0.23	2.7	97.3	0.0	-0.78	0.77	0.85	4.46	2.5	0.004	0.60	0.0	0.04	15.98	0.00	2.462	2.26	2.45	1.9	98.1	0.0	1.14	1.63	0.75	0.85	3.34	50700	6188	13	0	0	0	0	logfile
✔	8XAV	38204	2025-01-14	2023-12-05	2.87	3.10	2.96	3.1	0.004	0.84	0.0	0.05	18.06	0.01	2.191	7.44	0.55	3.1	96.9	0.0	-2.35	0.57	0.71	2.67	3.1	0.003	0.56	0.0	0.04	18.14	0.00	2.425	9.10	2.98	3.1	96.9	0.0	-0.16	1.06	0.74	0.86	3.14	48264	5886	18	0	0	0	0	logfile
✔	8XAX	38206	2025-01-14	2023-12-05	2.92	3.17	3.05	3.2	0.004	0.81	2.0	0.05	18.85	0.01	2.068	7.34	0.88	3.4	96.6	0.0	-2.30	0.73	0.83	2.52	3.2	0.004	0.60	0.0	0.04	18.64	0.00	1.943	8.55	2.96	3.3	96.7	0.0	-0.42	0.51	0.71	0.86	3.02	48954	5887	25	26	9	0	0	logfile
✔	8XAN	38202	2025-01-14	2023-12-05	3.5	3.12	3.41	3.4	0.011	1.19	0.0	0.08	14.66	0.02	2.299	9.73	1.56	4.5	95.5	0.0	-2.22	0.57	0.76	2.31	3.3	0.002	0.61	0.0	0.04	16.32	0.00	2.606	4.18	1.82	2.3	97.7	0.0	-1.26	1.54	0.60	0.82	2.18	6963	918	3	0	0	0	0	logfile
✔	8XB4	38210	2025-01-13	2023-12-05	2.92	3.16	2.96	3.2	0.005	0.61	0.0	0.04	14.47	0.00	2.258	7.33	0.00	1.9	98.1	0.0	-1.88	0.61	0.81	3.82	3.2	0.003	0.56	0.0	0.04	14.69	0.00	2.559	5.94	1.55	1.9	98.1	0.0	1.29	1.15	0.59	0.81	3.25	4307	536	2	0	1	0	0	logfile

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