Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8XAN	38202	2025-01-14	2023-12-05	3.5	3.12	3.41	3.4	0.011	1.19	0.0	0.08	14.66	0.02	2.299	9.73	1.56	4.5	95.5	0.0	-2.22	0.57	0.76	2.31	3.3	0.002	0.61	0.0	0.04	16.32	0.00	2.606	4.18	1.82	2.3	97.7	0.0	-1.26	1.54	0.60	0.82	2.18	6963	918	3	0	0	0	0	logfile
✔	8XB6	38212	2025-01-21	2023-12-05	3.7	4.38	3.59	3.9	0.004	0.66	0.0	0.05	14.57	0.01	2.079	12.76	0.27	4.1	95.9	0.1	-0.36	0.50	0.72	1.73	3.9	0.004	0.77	0.0	0.04	16.62	0.00	2.360	14.30	3.21	4.5	95.5	0.0	-0.14	0.81	0.52	0.83	1.59	66825	8575	22	0	0	0	0	logfile
✔	8RBF	19030	2025-01-20	2023-12-04	4.2	2.69	4.03	3.2	0.013	1.69	1.0	0.10	15.61	0.01	1.342	9.73	0.19	3.5	96.4	0.1	-1.94	0.66	0.68	—	1.7	0.003	0.78	0.0	0.05	14.24	0.00	1.836	10.24	0.00	3.3	96.7	0.0	0.38	2.38	0.69	0.73	—	14790	1848	8	0	9	0	0	logfile
✔	8RBM	19032	2025-01-17	2023-12-04	3.24	3.96	3.31	3.8	0.007	0.91	0.0	0.23	19.32	0.00	2.218	6.53	2.06	3.2	96.5	0.3	0.31	0.76	0.83	2.56	3.8	0.003	0.68	0.0	0.04	13.82	0.00	2.446	6.75	1.70	5.3	94.5	0.2	1.33	0.51	0.75	0.88	2.19	11259	1425	12	0	20	0	0	logfile
✔	8XAJ	38200	2025-01-18	2023-12-04	3.29	3.52	4.38	3.4	0.009	1.09	0.0	0.05	16.78	0.01	1.547	16.03	0.00	11.3	88.7	0.0	-1.52	0.68	0.76	2.25	3.4	0.005	0.97	1.0	0.05	17.47	0.01	1.890	13.16	1.93	10.0	90.0	0.0	0.11	1.12	0.65	0.75	1.65	11668	1410	3	0	7	0	0	logfile
✔	8V85	43023	2025-01-13	2023-12-04	2.9	5.78	4.39	8.6	0.002	0.50	0.0	0.04	8.92	0.00	2.342	5.38	0.00	2.1	97.9	0.0	1.33	0.20	0.11	0.76	5.6	0.004	0.93	0.0	0.04	13.66	0.00	2.424	28.18	0.58	5.6	94.4	0.0	-0.43	4.16	0.35	0.28	0.83	1539	197	1	0	0	0	0	logfile
✔	8RBG	19031	2025-01-14	2023-12-04	4.9	5.29	4.93	5.0	0.013	1.92	5.0	0.11	12.43	0.02	1.819	10.03	0.62	2.7	97.0	0.3	0.61	0.78	0.66	—	5.0	0.003	0.69	0.0	0.04	13.84	0.00	1.988	14.63	0.00	3.0	97.0	0.0	0.72	1.28	0.83	0.80	—	6008	737	2	0	3	0	0	logfile
✔	8V81	43014	2025-01-16	2023-12-04	3.6	2.82	3.57	3.6	0.003	0.53	0.0	0.04	19.32	0.00	1.993	6.01	0.50	3.7	96.3	0.0	-0.73	0.63	0.79	1.20	3.6	0.004	0.86	0.0	0.04	19.06	0.00	1.999	4.94	6.64	2.8	97.2	0.0	-0.27	0.28	0.64	0.79	1.07	9258	1132	2	0	11	0	0	logfile
✔	8V7Z	43011	2025-01-16	2023-12-04	3.4	2.66	3.42	3.5	0.002	0.58	0.0	0.04	19.31	0.00	2.004	11.77	0.41	4.8	95.2	0.0	-0.10	0.50	0.72	1.84	3.5	0.004	0.61	0.0	0.04	19.18	0.00	1.939	9.80	5.87	5.4	94.5	0.1	-0.08	0.23	0.50	0.72	1.83	8977	1104	2	0	10	0	0	logfile
✔	8RBQ	19034	2025-01-18	2023-12-04	3.32	4.02	3.37	3.8	0.008	1.30	4.0	0.20	19.50	0.01	2.242	6.92	0.65	5.4	94.1	0.5	-1.53	0.76	0.81	1.88	3.8	0.003	0.70	0.0	0.04	15.62	0.00	1.357	6.63	2.45	5.9	93.9	0.2	0.99	0.99	0.76	0.88	1.54	12140	1561	13	0	17	0	0	logfile
✔	8RB8	19028	2025-01-18	2023-12-03	3.41	4.14	3.49	3.8	0.006	0.87	0.0	0.22	19.00	0.00	2.169	5.23	1.51	4.5	95.3	0.2	0.92	0.77	0.84	1.81	3.9	0.003	0.62	0.0	0.04	13.56	0.00	2.490	5.78	1.59	4.2	95.8	0.1	1.77	0.60	0.77	0.89	1.58	12585	1605	13	0	22	0	0	logfile
✔	8RB9	19029	2025-01-18	2023-12-03	3.19	3.83	3.27	3.6	0.007	0.94	0.0	0.22	20.53	0.00	2.148	5.77	1.99	5.0	94.9	0.1	0.54	0.79	0.85	2.38	3.6	0.004	0.66	0.0	0.04	14.22	0.00	2.369	5.50	2.14	4.6	95.3	0.1	1.39	1.02	0.79	0.91	1.98	12743	1605	13	0	26	0	0	logfile
✔	8RB5	19026	2025-01-15	2023-12-03	3.3	3.79	3.44	3.7	0.012	1.72	0.0	0.08	14.63	0.01	2.585	0.34	0.64	2.2	97.8	0.0	-2.05	0.29	0.74	1.91	3.7	0.003	0.56	0.0	0.03	17.65	0.01	2.406	6.96	0.43	3.0	97.0	0.0	1.89	1.42	0.31	0.80	1.63	8772	540	3	0	0	0	4422	logfile
✔	8RB7	19027	2025-01-14	2023-12-03	3.2	3.80	3.05	3.8	0.014	1.83	0.0	0.10	14.96	0.02	2.398	0.86	0.96	4.2	95.8	0.0	-1.02	0.28	0.71	1.70	3.8	0.003	0.59	0.0	0.04	17.80	0.01	2.498	8.55	1.28	2.2	97.8	0.0	1.73	2.07	0.28	0.76	1.59	5848	360	2	0	0	0	2948	logfile
✔	8XA7	38196	2025-01-15	2023-12-02	2.94	3.16	3.03	3.2	0.004	0.56	0.0	0.04	17.70	0.00	1.850	8.99	0.32	7.1	92.5	0.3	-0.53	0.70	0.80	2.59	3.2	0.003	0.56	0.0	0.04	18.15	0.00	2.320	5.49	1.89	6.1	93.6	0.3	-0.22	0.35	0.69	0.80	2.47	51724	3257	9	0	0	0	25990	logfile
✔	8RB4	19025	2025-01-19	2023-12-02	3.2	3.79	3.35	3.7	0.014	1.83	0.0	0.10	14.38	0.02	2.509	0.68	0.51	3.4	96.6	0.0	-1.19	0.47	0.73	1.91	3.7	0.003	0.61	0.0	0.04	17.17	0.00	2.365	7.39	1.79	2.5	97.3	0.2	1.55	2.23	0.48	0.79	1.47	14620	900	5	0	0	0	7370	logfile
✔	8XA6	38195	2025-01-14	2023-12-02	3.02	3.27	3.11	3.3	0.010	0.61	0.0	0.04	18.05	0.00	1.878	7.36	0.19	5.3	94.4	0.3	-0.87	0.53	0.48	0.52	3.3	0.011	0.74	0.0	0.05	18.40	0.01	1.971	9.82	2.79	9.2	90.6	0.3	-1.67	0.47	0.57	0.54	0.54	48778	3079	8	0	0	0	24502	logfile
✔	8XA8	38197	2025-01-18	2023-12-02	3.19	3.49	3.37	3.5	0.003	0.53	2.0	0.04	18.44	0.00	1.924	11.62	0.49	6.2	93.7	0.1	-0.48	0.73	0.78	1.78	3.5	0.005	0.74	1.0	0.04	18.52	0.01	2.123	9.39	3.08	7.5	92.5	0.1	-0.61	0.27	0.74	0.80	1.83	57754	3723	9	0	3	0	28763	logfile
✔	8RAo	19021	2025-01-14	2023-12-01	4.4	4.65	4.05	3.9	0.002	0.46	0.0	0.04	10.68	0.00	2.016	4.10	0.00	1.6	98.4	0.0	2.69	0.74	0.77	—	3.9	0.003	0.62	0.0	0.04	12.87	0.00	1.975	11.15	0.00	2.2	97.8	0.0	1.75	1.36	0.75	0.81	—	5781	694	3	9	3	0	0	logfile
✔	8RAN	19020	2025-01-14	2023-12-01	3.25	3.85	3.27	3.4	0.001	0.35	0.0	0.04	10.56	0.00	2.076	3.31	0.00	1.2	98.8	0.0	3.22	0.64	0.79	1.84	3.4	0.003	0.57	0.0	0.04	13.78	0.00	2.504	9.05	0.65	1.9	98.1	0.0	1.37	1.31	0.65	0.85	2.17	5799	690	2	13	0	0	0	logfile

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