Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GG0	51319	2025-01-13	2024-08-12	2.81	2.88	2.40	2.9	0.008	1.41	0.0	0.09	14.69	0.01	2.615	1.63	0.00	7.6	92.4	0.0	-2.42	0.42	0.90	5.63	2.9	0.004	0.55	0.0	0.05	15.90	0.00	2.567	1.23	2.20	2.5	97.5	0.0	-2.13	0.33	0.39	0.88	5.78	2385	321	3	0	0	0	0	logfile
✔	9J4X	61138	2025-01-14	2024-08-10	2.9	3.08	2.89	3.1	0.003	0.52	0.0	0.04	12.98	0.00	2.140	7.96	1.33	4.6	95.4	0.0	0.84	0.60	0.83	3.05	3.1	0.004	0.56	0.0	0.04	15.54	0.00	2.590	7.36	1.47	4.4	95.6	0.0	1.55	0.33	0.61	0.83	2.20	6588	764	4	0	4	0	0	logfile
✔	9D3D	46532	2025-01-21	2024-08-09	3.41	3.73	3.55	3.7	0.003	0.58	0.0	0.04	10.40	0.00	1.972	4.07	1.04	3.0	97.0	0.0	-1.46	0.73	0.85	3.48	3.7	0.006	0.77	0.0	0.05	13.23	0.00	2.431	5.25	2.71	5.0	95.0	0.0	-0.76	0.47	0.74	0.87	2.79	17243	1973	50	0	130	0	0	logfile
✔	9D1W	46478	2025-01-21	2024-08-08	3.44	3.87	3.54	3.8	0.003	0.63	0.0	0.04	14.31	0.00	1.921	4.26	1.73	4.3	95.6	0.1	-1.22	0.66	0.82	2.83	3.8	0.003	0.67	0.0	0.05	14.84	0.00	2.511	3.81	2.48	4.7	95.2	0.1	-0.73	0.58	0.60	0.79	2.63	17036	1965	39	0	118	0	0	logfile
✔	9J2N	61099	2025-01-13	2024-08-07	3.3	3.54	3.29	3.6	0.006	0.81	0.0	0.04	16.62	0.01	2.233	13.33	0.00	4.9	95.1	0.0	0.45	0.65	0.86	2.03	3.5	0.003	0.60	0.0	0.04	15.57	0.00	2.573	7.28	1.06	3.4	96.6	0.0	1.34	0.76	0.63	0.88	1.54	3584	468	2	0	1	0	0	logfile
✔	9D0T	46461	2025-01-22	2024-08-07	2.84	2.67	2.91	1.9	0.014	1.89	0.0	0.10	13.69	0.01	2.391	0.01	0.32	5.5	94.5	0.0	-2.16	0.81	0.72	2.42	1.9	0.004	0.68	0.0	0.04	16.66	0.00	2.090	6.69	1.51	4.7	95.3	0.0	0.23	1.44	0.91	0.87	2.51	67179	4230	12	0	0	0	33578	logfile
✔	9CZP	46424	2025-01-14	2024-08-05	3.3	3.59	3.27	3.5	0.021	2.01	0.0	0.11	10.68	0.01	2.402	0.40	0.00	7.0	93.0	0.0	-0.29	0.47	0.84	6.05	3.5	0.005	0.64	0.0	0.06	16.76	0.00	2.558	10.44	3.40	9.5	90.5	0.0	-1.43	1.61	0.42	0.84	4.71	5020	680	20	0	0	0	0	logfile
✔	9CZi	46417	2025-01-14	2024-08-05	3.0	3.03	2.88	3.0	0.021	1.92	0.0	0.10	9.10	0.01	2.435	0.79	0.00	7.0	93.0	0.0	-1.72	0.38	0.80	5.58	3.0	0.004	0.67	0.0	0.05	18.43	0.00	2.522	6.95	1.41	4.9	95.1	0.0	-2.15	1.28	0.47	0.87	4.72	5570	730	10	0	0	0	0	logfile
✔	9CZL	46420	2025-01-14	2024-08-05	2.9	3.25	2.64	3.2	0.023	1.95	0.0	0.09	9.53	0.01	2.463	0.52	0.00	5.6	94.4	0.0	-1.27	0.54	0.85	5.46	3.2	0.005	0.77	0.0	0.05	17.12	0.00	2.581	4.15	1.54	6.8	93.2	0.0	-1.73	1.67	0.45	0.84	5.31	5660	740	10	0	0	0	0	logfile
✔	9CZN	46422	2025-01-14	2024-08-05	2.6	2.70	2.56	2.7	0.020	1.90	0.0	0.12	13.57	0.01	2.563	0.00	0.00	4.7	95.3	0.0	-0.35	0.44	0.79	6.66	2.7	0.006	0.71	0.0	0.06	19.24	0.00	2.613	8.15	1.60	5.2	94.8	0.0	-1.20	3.21	0.56	0.88	5.45	5020	680	20	0	0	0	0	logfile
✔	9GD3	51247	2025-01-22	2024-08-04	3.0	3.49	2.92	3.1	0.005	0.85	0.0	0.06	24.31	0.01	2.176	1.23	0.07	2.2	97.8	0.0	-0.07	0.78	0.74	3.10	3.1	0.003	0.62	0.0	0.03	23.95	0.00	1.251	6.42	1.06	2.0	98.0	0.0	2.26	1.08	0.86	0.89	2.61	19030	1630	13	284	3	0	0	logfile
✔	9GD0	51238	2025-01-23	2024-08-04	2.8	3.26	—	3.0	0.006	0.84	0.0	0.05	27.26	0.01	2.229	4.41	0.00	0.5	99.5	0.0	-0.62	0.86	0.82	3.22	3.0	0.004	0.63	0.0	0.03	28.00	0.00	2.409	7.11	2.57	1.5	98.5	0.0	2.54	1.33	0.88	0.86	2.02	20207	1253	16	500	0	0	0	logfile
✔	9GCS	51235	2025-01-17	2024-08-02	3.9	4.39	3.99	3.9	0.002	0.48	0.0	0.04	12.24	0.00	1.874	12.75	2.21	2.0	98.0	0.0	1.04	0.89	0.76	0.50	3.9	0.003	0.76	0.0	0.04	14.90	0.00	1.827	16.48	2.33	2.9	97.1	0.0	0.64	1.04	0.92	0.83	0.53	54740	6898	34	0	24	0	0	logfile
✔	9GCT	51236	2025-01-24	2024-08-02	3.7	4.37	3.80	3.8	0.003	0.70	0.0	0.04	14.77	0.00	2.031	16.90	0.00	2.9	97.1	0.0	0.21	0.89	0.73	0.51	3.8	0.003	0.79	0.0	0.04	16.44	0.00	1.880	14.94	1.94	2.9	97.1	0.0	0.40	0.54	0.92	0.84	0.77	73940	9322	45	0	30	0	0	logfile
✔	9GCK	51231	2025-01-18	2024-08-02	3.7	4.29	3.78	3.0	0.015	1.89	4.0	0.12	21.02	0.01	1.954	10.65	0.77	5.0	94.7	0.2	-2.69	0.82	0.70	0.99	2.8	0.006	0.83	0.0	0.05	21.25	0.01	2.466	23.40	1.96	5.1	94.8	0.1	-0.75	3.54	0.80	0.63	0.45	12298	1287	6	90	0	0	0	logfile
✔	9GCU	51237	2025-01-23	2024-08-02	2.8	3.33	2.68	3.1	0.003	0.67	0.0	0.04	13.27	0.00	2.040	12.45	0.09	2.0	98.0	0.0	0.35	0.86	0.85	2.65	3.1	0.004	0.92	1.0	0.06	15.70	0.00	1.635	11.39	1.21	2.0	97.9	0.0	0.62	0.50	0.87	0.88	2.59	20023	2508	16	0	10	83	0	logfile
✔	9iZV	61043	2025-01-19	2024-08-01	3.02	4.37	3.10	3.6	0.002	0.48	0.0	0.04	8.21	0.00	1.991	5.46	0.20	2.0	98.0	0.0	-0.72	0.81	0.62	1.19	3.7	0.003	0.78	0.0	0.05	14.00	0.00	2.366	12.29	2.50	4.1	95.9	0.0	0.40	1.22	0.90	0.82	1.11	14118	1857	4	0	0	0	0	logfile
✔	9iZU	61042	2025-01-14	2024-08-01	3.7	4.91	3.71	3.8	0.002	0.45	0.0	0.04	7.95	0.00	2.095	5.25	0.13	1.4	98.6	0.0	-0.47	0.51	0.15	0.72	3.9	0.004	0.83	0.0	0.05	13.67	0.01	2.546	19.17	1.70	5.6	94.4	0.0	-0.41	2.90	0.69	0.48	-0.07	7105	933	2	0	0	0	0	logfile
✔	9iZW	61044	2025-01-20	2024-08-01	3.12	3.31	3.20	3.3	0.003	0.53	1.0	0.04	14.73	0.00	1.895	3.90	1.34	4.6	95.4	0.0	-3.87	0.61	0.62	1.15	3.3	0.003	0.69	0.0	0.04	16.65	0.00	2.466	9.40	3.65	6.2	93.8	0.0	-1.24	0.69	0.72	0.81	1.53	15196	1996	4	0	0	0	0	logfile
✔	9GC3	51228	2025-01-20	2024-08-01	2.46	3.18	2.52	2.9	0.013	1.54	3.0	0.11	18.38	0.01	2.311	1.26	0.00	2.2	97.8	0.0	-0.68	0.92	0.93	5.50	2.9	0.003	0.55	0.0	0.04	18.10	0.00	2.510	4.15	0.73	1.3	98.7	0.0	0.75	1.01	0.88	0.90	4.15	15046	1673	5	80	0	0	0	logfile

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