Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8R8D	18999	2025-01-14	2023-11-29	2.6	2.88	2.59	2.9	0.003	0.67	0.0	0.05	14.75	0.01	2.232	7.33	0.00	4.3	95.7	0.0	0.10	0.70	0.81	2.80	2.9	0.003	0.66	0.0	0.05	14.91	0.01	2.501	6.96	2.62	4.7	95.3	0.0	0.30	1.13	0.67	0.82	3.40	7062	920	14	0	12	18	0	logfile
✔	8R8K	19002	2025-01-13	2023-11-29	3.41	3.66	3.37	3.7	0.003	0.49	0.0	0.04	15.09	0.00	2.145	4.83	0.23	2.6	97.4	0.0	-0.18	0.58	0.84	2.55	3.7	0.003	0.50	0.0	0.04	15.63	0.00	2.624	4.06	3.18	4.3	95.7	0.0	-0.18	0.30	0.59	0.85	2.39	4005	515	3	0	0	0	0	logfile
✔	8V4Q	42975	2025-01-14	2023-11-29	2.71	2.89	2.72	2.9	0.003	0.53	0.0	0.05	13.53	0.00	2.201	1.68	0.48	1.7	98.3	0.0	0.26	0.55	0.85	3.48	2.9	0.003	0.51	0.0	0.04	16.86	0.00	2.486	1.01	2.25	1.9	98.1	0.0	0.36	0.93	0.58	0.89	3.19	5993	761	3	0	0	0	0	logfile
✔	8R8R	19008	2025-01-19	2023-11-29	2.79	3.75	2.74	3.2	0.002	0.50	0.0	0.04	13.00	0.00	2.275	2.10	0.00	3.3	96.7	0.0	-0.27	0.89	0.88	5.08	3.2	0.002	0.53	0.0	0.04	14.04	0.00	2.481	2.37	0.15	3.1	96.9	0.0	0.07	0.90	0.89	0.92	4.63	13089	1683	6	6	3	0	0	logfile
✔	8R8Q	19006	2025-01-14	2023-11-29	4.08	4.33	4.04	4.3	0.003	0.69	0.0	0.04	13.96	0.00	2.210	7.88	0.17	7.9	92.1	0.0	-1.26	0.66	0.79	—	4.3	0.003	0.72	0.0	0.04	13.65	0.00	2.382	7.35	0.00	8.6	91.2	0.1	-0.89	0.39	0.66	0.80	—	5702	732	3	0	5	0	0	logfile
✔	8V4N	42974	2025-01-13	2023-11-29	2.43	2.63	2.50	2.6	0.002	0.49	0.0	0.04	14.21	0.00	2.260	4.14	0.93	2.3	97.7	0.0	0.80	0.31	0.85	3.24	2.6	0.002	0.54	0.0	0.04	17.77	0.00	2.652	1.71	2.80	1.9	98.1	0.0	0.88	0.99	0.31	0.87	3.51	2067	263	1	0	0	0	0	logfile
✔	8X9B	38171	2025-01-24	2023-11-29	3.82	4.04	3.78	4.0	0.012	1.57	0.0	0.10	12.25	0.01	2.028	2.03	0.00	2.4	97.6	0.0	-3.01	0.62	0.79	2.41	4.0	0.003	0.68	0.0	0.04	16.10	0.00	2.193	6.69	2.93	3.8	96.2	0.0	-1.20	1.34	0.66	0.84	2.15	22600	2898	16	0	0	0	0	logfile
✔	8V4K	42971	2025-01-22	2023-11-29	3.1	2.75	—	2.9	0.006	1.03	0.0	0.06	14.27	0.01	1.719	2.27	0.05	2.4	97.6	0.0	-1.97	0.71	0.83	2.97	2.9	0.003	0.61	0.0	0.04	16.08	0.00	1.834	5.86	1.23	2.1	97.9	0.0	0.73	0.69	0.76	0.88	3.02	17559	2229	10	0	17	0	0	logfile
✔	8V4L	42972	2025-01-21	2023-11-29	2.9	2.46	—	2.0	0.006	1.05	0.0	0.06	14.22	0.01	2.140	2.32	0.05	2.4	97.6	0.0	-1.75	0.65	0.79	3.24	2.1	0.004	0.67	0.0	0.04	17.19	0.00	1.841	8.30	2.66	2.6	97.4	0.0	0.57	1.86	0.73	0.85	3.19	17463	2230	11	0	13	0	0	logfile
✔	8V4M	42973	2025-01-21	2023-11-29	3.0	2.51	—	3.0	0.006	1.03	0.0	0.06	14.32	0.01	2.137	2.68	0.00	2.7	97.3	0.0	-1.91	0.65	0.79	2.78	2.0	0.004	0.73	0.0	0.05	17.21	0.01	1.835	8.85	1.91	2.7	97.3	0.0	0.44	1.50	0.72	0.85	3.18	17431	2227	11	0	13	0	0	logfile
✔	8X8Q	38156	2025-01-14	2023-11-28	3.14	3.86	3.14	3.6	0.004	0.83	0.0	0.05	14.72	0.00	2.223	21.86	0.57	1.5	98.5	0.0	0.16	0.84	0.87	3.78	3.6	0.003	0.57	0.0	0.04	15.60	0.00	2.603	8.21	1.14	1.3	98.7	0.0	0.25	0.35	0.84	0.87	3.61	4949	622	3	0	1	0	0	logfile
✔	8V46	42966	2025-01-20	2023-11-28	3.09	3.67	3.19	3.5	0.004	0.59	0.0	0.05	11.45	0.00	2.079	3.85	2.58	2.1	97.9	0.0	-0.32	0.78	0.81	2.75	3.5	0.005	0.58	0.0	0.04	13.52	0.00	1.928	6.23	1.23	2.1	97.9	0.0	1.94	0.67	0.80	0.86	2.47	15632	1937	7	0	3	0	0	logfile
✔	8V3X	42959	2025-01-24	2023-11-28	2.2	2.09	2.18	2.1	0.004	0.73	0.0	0.05	17.26	0.00	2.197	5.23	1.88	3.1	96.9	0.0	0.01	0.64	0.78	5.27	2.1	0.003	0.66	0.0	0.05	17.86	0.00	2.296	5.05	3.38	3.8	96.2	0.0	-0.10	0.79	0.63	0.77	5.05	75948	9696	42	0	0	0	0	logfile
✔	8V3Q	42950	2025-01-13	2023-11-28	3.1	3.32	2.96	3.3	0.009	1.22	0.0	0.07	14.29	0.01	2.109	1.78	0.00	2.8	97.2	0.0	-1.29	0.66	0.76	4.11	3.3	0.003	0.57	0.0	0.04	15.28	0.00	2.012	3.95	1.64	1.6	98.4	0.0	0.92	0.55	0.77	0.85	3.38	4030	503	4	0	9	0	0	logfile
✔	8V49	42969	2025-01-18	2023-11-28	3.62	4.40	3.75	3.8	0.003	0.80	0.0	0.05	12.61	0.01	2.306	5.13	3.08	4.8	95.2	0.0	0.10	0.77	0.77	1.50	3.9	0.003	0.65	0.0	0.04	14.81	0.00	2.443	12.60	2.94	2.9	97.1	0.0	1.46	2.98	0.78	0.81	1.35	12834	1586	5	0	1	0	0	logfile
✔	8V3Z	42961	2025-01-25	2023-11-28	3.6	3.28	3.45	3.3	0.003	0.50	0.0	0.04	16.10	0.00	2.135	7.03	0.24	2.6	97.4	0.0	-0.02	0.70	0.83	2.51	3.2	0.005	0.61	0.0	0.04	17.29	0.00	2.327	5.48	3.80	4.1	95.9	0.0	-0.55	0.43	0.70	0.82	2.47	76422	9732	42	0	0	0	0	logfile
✔	8V45	42965	2025-01-23	2023-11-28	3.63	4.32	3.75	3.9	0.005	0.75	0.0	0.05	12.90	0.01	2.257	4.34	5.65	2.3	97.7	0.0	-1.11	0.84	0.78	1.39	3.9	0.003	0.66	0.0	0.04	14.23	0.00	2.386	9.16	2.70	2.1	97.9	0.0	1.59	1.54	0.86	0.82	1.21	19813	2485	12	0	4	0	0	logfile
✔	8V3L	42949	2025-01-17	2023-11-28	4.3	3.45	4.78	4.3	0.003	0.63	0.0	0.04	12.02	0.00	2.209	12.35	0.00	2.7	97.2	0.1	1.47	0.25	0.63	—	4.2	0.003	0.62	0.0	0.04	13.16	0.00	2.358	10.49	0.00	2.6	97.2	0.1	1.16	1.57	0.25	0.65	—	11282	1359	2	0	0	0	0	logfile
✔	8V40	42962	2025-01-25	2023-11-28	3.9	3.34	3.77	3.4	0.003	0.51	0.0	0.04	11.99	0.00	2.202	8.37	0.00	2.9	97.1	0.0	0.49	0.63	0.78	2.31	3.3	0.006	0.71	0.0	0.05	15.46	0.00	2.439	8.09	2.12	5.0	95.0	0.0	-0.82	1.29	0.63	0.77	2.18	76422	9732	42	0	0	0	0	logfile
✔	8V47	42967	2025-01-23	2023-11-28	4.08	4.63	4.12	4.1	0.006	0.79	0.0	0.05	12.06	0.01	2.275	5.49	2.85	2.3	97.7	0.0	-0.21	0.83	0.77	—	4.1	0.004	0.58	0.0	0.04	12.03	0.00	2.362	12.08	0.04	3.1	96.9	0.0	1.36	1.58	0.84	0.81	—	20580	2548	11	0	4	0	0	logfile

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