Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8V3T	42953	2025-01-25	2023-11-28	2.7	2.31	2.67	2.4	0.003	0.60	0.0	0.04	15.51	0.00	2.218	6.75	2.54	2.4	97.6	0.0	-0.10	0.60	0.78	2.56	2.3	0.004	0.69	0.0	0.05	17.69	0.00	2.439	5.64	5.91	4.6	95.4	0.0	-0.90	3.65	0.64	0.81	2.63	76362	9720	42	0	0	0	0	logfile
✔	8V3Z	42961	2025-01-25	2023-11-28	3.6	3.28	3.45	3.3	0.003	0.50	0.0	0.04	16.10	0.00	2.135	7.03	0.24	2.6	97.4	0.0	-0.02	0.70	0.83	2.51	3.2	0.005	0.61	0.0	0.04	17.29	0.00	2.327	5.48	3.80	4.1	95.9	0.0	-0.55	0.43	0.70	0.82	2.47	76422	9732	42	0	0	0	0	logfile
✔	8V3S	42952	2025-01-13	2023-11-28	3.6	3.74	3.40	3.7	0.011	1.52	0.0	0.09	12.86	0.01	1.978	2.51	0.00	3.9	96.1	0.0	-1.14	0.72	0.75	3.31	3.7	0.003	0.61	0.0	0.04	14.55	0.00	2.062	6.21	2.73	2.2	97.6	0.2	0.49	0.60	0.78	0.81	3.07	3909	501	4	0	5	0	0	logfile
✔	8V3R	42951	2025-01-13	2023-11-28	3.4	3.53	3.28	3.5	0.012	1.58	0.0	0.09	12.46	0.01	1.701	1.56	0.24	2.2	97.8	0.0	-0.46	0.66	0.75	4.33	3.5	0.003	0.61	0.0	0.04	15.27	0.00	1.996	6.89	2.43	2.6	97.4	0.0	0.57	1.38	0.79	0.84	4.00	3953	503	4	0	5	0	0	logfile
✔	8X8Q	38156	2025-01-14	2023-11-28	3.14	3.86	3.14	3.6	0.004	0.83	0.0	0.05	14.72	0.00	2.223	21.86	0.57	1.5	98.5	0.0	0.16	0.84	0.87	3.78	3.6	0.003	0.57	0.0	0.04	15.60	0.00	2.603	8.21	1.14	1.3	98.7	0.0	0.25	0.35	0.84	0.87	3.61	4949	622	3	0	1	0	0	logfile
✔	8X84	38135	2025-01-26	2023-11-27	3.1	2.99	3.18	3.2	0.004	0.53	0.0	0.03	14.45	0.00	1.976	4.19	0.30	0.8	99.2	0.0	3.21	0.57	0.78	3.16	3.2	0.003	0.46	0.0	0.03	15.30	0.00	2.482	3.66	1.22	1.6	98.4	0.0	3.35	0.48	0.59	0.81	2.95	24534	1524	12	0	6	4	12444	logfile
✔	8X82	38133	2025-01-18	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.003	0.44	0.0	0.04	17.29	0.00	2.635	3.93	1.53	1.6	98.4	0.0	3.41	0.39	0.63	0.83	2.61	12004	1520	4	0	0	0	0	logfile
✔	8X8o	38151	2025-01-21	2023-11-27	2.5	2.87	2.48	2.7	0.005	0.55	0.0	0.05	14.74	0.00	2.200	2.38	1.64	5.6	94.4	0.0	-1.15	0.82	0.93	5.71	2.7	0.005	0.59	0.0	0.05	14.79	0.00	2.495	1.58	1.48	5.9	94.1	0.0	-0.96	0.17	0.82	0.94	5.72	17682	2325	3	0	0	0	0	logfile
✔	8X80	38131	2025-01-24	2023-11-27	3.88	2.96	3.92	2.0	0.003	0.72	0.0	0.05	18.70	0.00	2.093	15.51	0.72	4.1	95.7	0.1	-0.19	0.68	0.62	0.95	2.0	0.004	0.77	0.0	0.05	18.22	0.00	2.462	16.20	5.18	4.9	94.8	0.2	-0.44	0.46	0.69	0.63	0.85	21890	2694	12	0	25	0	0	logfile
✔	8X8M	38149	2025-01-21	2023-11-27	2.37	2.78	2.36	2.7	0.002	0.49	0.0	0.04	14.22	0.00	2.178	2.38	1.48	4.1	95.9	0.0	-0.91	0.77	0.90	5.32	2.6	0.003	0.55	0.0	0.05	14.42	0.00	2.546	1.55	1.90	5.2	94.8	0.0	-0.89	0.22	0.83	0.93	5.56	17682	2325	3	0	0	0	0	logfile
✔	8X81	38132	2025-01-24	2023-11-27	3.77	2.86	3.79	2.0	0.004	0.72	0.0	0.05	16.02	0.01	2.171	9.91	0.40	3.8	96.0	0.2	-0.29	0.69	0.67	0.67	2.0	0.007	0.82	0.0	0.05	16.02	0.01	2.408	14.87	4.21	6.7	93.2	0.1	-0.78	0.98	0.71	0.71	1.04	21875	2694	10	0	22	0	0	logfile
✔	8X8L	38148	2025-01-21	2023-11-27	2.7	2.58	2.91	2.9	0.004	0.60	1.0	0.05	9.65	0.00	2.091	5.91	1.89	2.6	97.4	0.0	2.09	0.57	0.76	3.42	2.8	0.003	0.58	0.0	0.04	15.87	0.00	2.350	5.23	1.68	3.9	96.1	0.0	1.47	1.14	0.59	0.84	3.87	17555	1140	6	0	0	0	8704	logfile
✔	8X83	38134	2025-01-26	2023-11-27	2.8	2.86	2.94	3.0	0.005	0.60	0.0	0.03	14.83	0.00	1.974	4.85	1.22	1.3	98.7	0.0	2.34	0.59	0.79	2.50	3.0	0.004	0.49	0.0	0.03	15.94	0.00	2.473	3.51	0.76	2.4	97.6	0.0	3.05	0.52	0.58	0.79	3.09	24482	1520	12	0	6	4	12424	logfile
✔	8X85	38136	2025-01-20	2023-11-27	3.58	2.69	3.57	2.2	0.004	0.78	0.0	0.05	13.70	0.01	2.110	12.72	0.18	6.6	93.1	0.3	-1.14	0.70	0.69	1.67	2.2	0.003	0.80	1.0	0.05	15.02	0.00	2.482	11.33	2.47	5.6	94.1	0.3	-0.85	0.50	0.68	0.66	1.76	14490	1782	8	0	17	0	0	logfile
✔	8X7V	38128	2025-01-17	2023-11-26	3.01	3.44	3.17	3.4	0.003	0.65	0.0	0.04	13.39	0.01	2.074	7.37	0.08	2.7	97.3	0.0	0.16	0.68	0.73	2.43	3.4	0.003	0.62	0.0	0.04	16.07	0.00	2.516	6.57	2.67	3.1	96.9	0.0	0.67	1.19	0.62	0.71	1.77	11202	1418	3	0	0	0	0	logfile
✔	8X7W	38129	2025-01-24	2023-11-26	3.36	3.65	3.42	3.6	0.003	0.56	0.0	0.04	13.06	0.01	2.022	7.78	0.04	4.3	95.7	0.0	0.43	0.67	0.64	1.29	3.6	0.004	0.67	0.0	0.04	15.20	0.00	2.437	6.91	3.40	4.2	95.8	0.0	0.09	0.45	0.72	0.72	1.10	22389	2835	6	0	0	0	0	logfile
✔	8V32	42941	2025-01-26	2023-11-26	3.01	2.21	3.32	2.0	0.003	0.60	0.0	0.04	20.85	0.00	1.959	9.62	1.43	3.9	96.1	0.0	0.64	0.78	0.79	2.07	1.9	0.003	0.57	0.0	0.04	20.62	0.00	1.928	8.32	3.76	3.4	96.6	0.0	0.99	0.34	0.78	0.80	2.05	24592	2822	20	82	16	2	0	logfile
✔	8V2Z	42938	2025-01-20	2023-11-25	2.72	3.50	2.78	3.2	0.005	0.78	0.0	0.05	15.42	0.01	2.186	3.79	0.51	3.1	96.9	0.0	-1.04	0.75	0.88	3.25	3.2	0.003	0.59	0.0	0.04	14.93	0.00	2.070	3.38	0.89	2.9	97.1	0.0	1.71	1.54	0.75	0.88	2.92	14635	1860	10	0	10	0	0	logfile
✔	8V30	42939	2025-01-20	2023-11-25	2.54	3.42	2.59	3.1	0.008	0.94	10.0	0.05	14.97	0.01	1.900	3.02	0.51	3.3	96.7	0.0	-1.20	0.74	0.87	3.73	3.0	0.005	0.68	0.0	0.05	14.22	0.00	1.920	3.90	0.63	3.5	96.5	0.0	1.47	0.28	0.75	0.89	3.82	14910	1890	20	0	15	0	0	logfile
✔	8X7J	38100	2025-01-19	2023-11-24	3.39	4.10	3.41	2.9	0.003	0.52	0.0	0.03	25.85	0.00	1.882	10.74	1.73	2.1	97.9	0.0	2.58	0.90	0.81	2.21	2.9	0.005	0.78	0.0	0.04	26.52	0.00	2.048	11.18	2.11	2.6	97.4	0.0	2.17	1.24	0.91	0.84	1.53	13739	1018	14	288	2	0	0	logfile

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