Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X5B	38065	2025-01-14	2023-11-16	2.84	3.12	2.88	3.1	0.014	1.74	10.0	0.11	18.03	0.02	2.248	11.12	1.65	4.1	95.8	0.1	-1.37	0.64	0.84	3.27	3.1	0.003	0.56	0.0	0.04	16.68	0.00	2.392	2.71	1.20	2.4	97.6	0.0	2.05	0.98	0.63	0.85	2.87	6973	786	6	0	28	14	0	logfile
✔	8X52	38059	2025-01-17	2023-11-16	2.9	3.11	2.86	3.3	0.009	1.13	7.0	0.07	14.34	0.01	1.598	7.57	0.88	4.7	95.2	0.2	-3.49	0.49	0.63	2.82	3.2	0.004	0.68	0.0	0.04	14.84	0.00	2.425	7.26	2.37	3.1	96.8	0.1	0.42	0.80	0.66	0.83	2.92	10907	1334	14	0	25	0	0	logfile
✔	8X51	38058	2025-01-15	2023-11-16	2.92	3.16	2.94	3.2	0.008	1.27	0.0	0.07	18.47	0.01	2.328	1.89	0.00	7.3	92.3	0.3	-3.65	0.56	0.76	3.45	3.2	0.003	0.68	0.0	0.04	20.64	0.00	2.354	5.60	2.58	6.5	93.1	0.3	-0.57	1.56	0.61	0.79	2.77	8095	885	6	42	2	0	0	logfile
✔	8R54	18891	2025-01-21	2023-11-15	3.5	3.54	3.52	3.5	0.006	0.65	1.0	0.05	18.75	0.00	2.176	9.13	0.35	8.8	91.2	0.1	-1.09	0.83	0.85	2.67	3.5	0.002	0.62	0.0	0.05	17.11	0.00	2.477	6.18	2.36	6.0	94.0	0.0	-0.65	0.24	0.82	0.85	2.59	15900	1982	11	0	24	0	0	logfile
✔	8R51	18890	2025-01-19	2023-11-15	3.2	3.29	3.12	3.3	0.004	0.52	0.0	0.05	16.46	0.00	2.103	6.56	0.57	5.9	94.1	0.0	-0.39	0.77	0.88	3.90	3.3	0.002	0.51	0.0	0.04	16.56	0.00	2.358	5.68	3.75	4.7	95.3	0.0	-0.42	0.27	0.78	0.89	3.64	13978	1793	6	0	13	0	0	logfile
✔	8UZA	42837	2025-01-17	2023-11-14	3.17	3.37	3.20	3.3	0.004	0.55	0.0	0.04	21.34	0.00	2.122	7.07	0.25	4.8	95.2	0.0	-0.15	0.77	0.84	2.56	3.3	0.005	0.58	0.0	0.04	21.42	0.00	2.267	5.51	2.34	5.4	94.6	0.0	0.02	0.21	0.77	0.84	2.09	11072	910	4	171	0	0	0	logfile
✔	8UZB	42838	2025-01-17	2023-11-14	2.63	2.93	2.72	2.9	0.003	0.53	0.0	0.04	20.26	0.00	2.147	5.73	0.00	3.7	96.3	0.0	0.49	0.67	0.78	2.83	2.9	0.005	0.63	0.0	0.04	21.32	0.00	2.462	4.89	2.10	4.1	95.9	0.0	0.56	0.32	0.65	0.79	2.66	10882	910	4	162	0	0	0	logfile
✔	8UZC	42839	2025-01-14	2023-11-14	3.8	4.02	3.72	4.0	0.004	0.71	0.0	0.04	16.35	0.01	1.992	14.20	3.45	9.7	90.0	0.2	-2.81	0.65	0.69	2.14	4.0	0.004	0.68	0.0	0.05	16.72	0.01	2.392	12.30	3.71	12.3	87.7	0.0	-3.02	0.45	0.65	0.70	1.57	6831	443	3	0	0	0	3367	logfile
✔	8UZ2	42831	2025-01-21	2023-11-14	3.18	3.48	3.24	3.4	0.004	0.55	0.0	0.04	13.16	0.00	1.999	3.90	0.00	4.4	95.6	0.0	0.06	0.62	0.80	2.70	3.4	0.003	0.58	0.0	0.04	15.63	0.00	2.082	6.66	1.32	3.3	96.7	0.0	0.72	0.53	0.66	0.83	2.77	17474	2246	15	0	10	0	0	logfile
✔	8UZ0	42829	2025-01-16	2023-11-14	2.8	3.08	2.94	3.1	0.012	1.89	40.0	0.11	15.93	0.02	1.973	0.23	3.11	3.7	96.2	0.1	-1.29	0.69	0.81	4.01	3.1	0.003	0.63	0.0	0.04	17.02	0.00	1.842	2.90	1.88	2.7	97.3	0.0	0.99	1.56	0.62	0.79	2.99	52371	3348	18	0	18	0	25938	logfile
✔	8UZ1	42830	2025-01-16	2023-11-14	3.6	3.84	3.63	3.9	0.012	1.91	30.0	0.11	15.16	0.01	1.829	0.04	1.34	4.9	94.9	0.2	-1.77	0.76	0.83	3.08	3.9	0.005	0.66	0.0	0.04	15.62	0.00	1.187	4.25	1.42	3.8	96.2	0.0	-0.03	1.52	0.70	0.81	1.97	52410	3348	18	0	27	0	25941	logfile
✔	8UYi	42807	2025-01-14	2023-11-13	3.13	3.34	3.23	3.4	0.004	0.67	0.0	0.04	12.68	0.00	2.057	4.03	1.08	2.1	97.9	0.0	-0.84	0.52	0.74	3.12	3.4	0.003	0.64	0.0	0.04	15.67	0.00	1.959	8.31	2.77	2.6	97.4	0.0	1.55	1.92	0.66	0.82	2.32	5980	738	4	0	6	0	0	logfile
✔	8UYF	42804	2025-01-14	2023-11-13	2.75	3.09	2.39	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.003	0.57	0.0	0.04	13.79	0.00	2.481	6.03	1.53	1.8	98.2	0.0	1.67	0.99	0.75	0.86	3.62	6460	801	2	0	0	0	0	logfile
✔	8R4A	18883	2025-01-16	2023-11-13	2.8	2.04	2.70	2.7	0.013	2.16	0.0	0.10	15.07	0.01	2.451	5.51	0.00	6.2	93.8	0.0	-4.27	0.78	0.80	3.91	2.7	0.005	0.84	0.0	0.05	17.14	0.00	2.549	9.76	4.81	4.9	95.1	0.0	-4.32	0.60	0.81	0.86	4.20	9225	1170	9	0	0	0	0	logfile
✔	8UYH	42806	2025-01-14	2023-11-13	2.84	2.98	2.94	3.1	0.006	0.76	0.0	0.04	13.96	0.01	2.074	3.66	1.52	1.1	98.9	0.0	-1.53	0.55	0.80	3.13	3.1	0.003	0.52	0.0	0.04	15.82	0.00	1.941	5.07	2.42	1.8	98.2	0.0	1.50	0.96	0.60	0.83	2.25	6036	745	4	0	5	0	0	logfile
✔	8R4C	18885	2025-01-13	2023-11-13	3.55	2.98	3.52	2.9	0.004	0.72	0.0	0.04	18.00	0.01	2.207	11.23	1.16	9.5	90.5	0.0	-2.95	0.64	0.76	1.62	2.9	0.003	0.70	0.0	0.04	18.41	0.01	2.552	10.09	7.91	8.4	91.6	0.0	-2.92	0.22	0.63	0.76	1.63	4027	553	2	0	0	0	0	logfile
✔	8UY6	42793	2025-01-25	2023-11-13	1.9	2.64	1.98	2.3	0.003	0.53	0.0	0.04	17.15	0.00	2.025	8.37	1.00	3.6	96.1	0.3	0.86	0.83	0.93	5.48	2.3	0.003	0.60	0.0	0.04	16.95	0.00	2.453	3.24	1.28	1.7	98.1	0.3	1.84	0.29	0.81	0.93	5.07	22616	2928	24	0	8	0	0	logfile
✔	8UY4	42792	2025-01-24	2023-11-13	3.08	3.86	3.12	3.5	0.004	0.59	0.0	0.04	16.41	0.00	1.930	8.85	1.55	5.4	94.3	0.3	-0.62	0.85	0.75	3.48	3.5	0.002	0.51	0.0	0.04	16.34	0.00	2.380	4.11	0.86	6.1	93.9	0.0	-0.43	1.12	0.85	0.76	3.88	21959	1346	5	0	108	0	10495	logfile
✔	8R4B	18884	2025-01-14	2023-11-13	3.88	2.61	—	2.9	0.003	0.69	0.0	0.04	16.62	0.00	2.206	12.29	0.52	9.5	90.2	0.3	-2.78	0.76	0.69	1.44	2.9	0.004	0.75	0.0	0.04	17.36	0.00	2.422	12.56	3.13	9.0	90.7	0.3	-2.44	1.57	0.77	0.71	1.62	7600	1031	4	0	1	0	0	logfile
✔	8UYB	42798	2025-01-19	2023-11-13	3.87	4.18	3.89	3.9	0.002	0.51	0.0	0.04	12.23	0.00	2.054	8.53	0.00	4.2	95.8	0.0	1.15	0.70	0.85	1.29	3.9	0.003	0.67	0.0	0.04	14.13	0.00	2.000	8.67	1.43	4.0	96.0	0.0	1.29	1.00	0.71	0.86	0.93	13836	1796	4	0	8	0	0	logfile

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