Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8R4D	18886	2025-01-13	2023-11-13	3.88	3.12	3.79	3.1	0.003	0.65	0.0	0.04	14.85	0.00	2.289	12.94	0.30	9.6	89.8	0.7	-2.57	0.52	0.58	2.62	3.1	0.003	0.62	0.0	0.04	16.81	0.00	2.503	10.88	3.57	9.1	90.2	0.7	-2.20	0.40	0.52	0.58	2.25	3573	478	3	0	1	0	0	logfile
✔	8R4B	18884	2025-01-14	2023-11-13	3.88	2.61	—	2.9	0.003	0.69	0.0	0.04	16.62	0.00	2.206	12.29	0.52	9.5	90.2	0.3	-2.78	0.76	0.69	1.44	2.9	0.004	0.75	0.0	0.04	17.36	0.00	2.422	12.56	3.13	9.0	90.7	0.3	-2.44	1.57	0.77	0.71	1.62	7600	1031	4	0	1	0	0	logfile
✔	8UYH	42806	2025-01-14	2023-11-13	2.84	2.98	2.94	3.1	0.006	0.76	0.0	0.04	13.96	0.01	2.074	3.66	1.52	1.1	98.9	0.0	-1.53	0.55	0.80	3.13	3.1	0.003	0.52	0.0	0.04	15.82	0.00	1.941	5.07	2.42	1.8	98.2	0.0	1.50	0.96	0.60	0.83	2.25	6036	745	4	0	5	0	0	logfile
✔	8UYF	42804	2025-01-14	2023-11-13	2.75	3.09	2.39	3.0	0.003	0.51	0.0	0.04	9.08	0.00	2.305	4.72	1.12	1.2	98.8	0.0	1.14	0.74	0.86	5.22	3.0	0.003	0.57	0.0	0.04	13.79	0.00	2.481	6.03	1.53	1.8	98.2	0.0	1.67	0.99	0.75	0.86	3.62	6460	801	2	0	0	0	0	logfile
✔	8UYC	42799	2025-01-19	2023-11-13	3.75	3.87	3.79	3.8	0.002	0.52	0.0	0.04	12.75	0.00	2.016	7.51	0.00	3.5	96.5	0.0	1.07	0.70	0.83	1.22	3.8	0.003	0.59	0.0	0.04	15.55	0.00	2.000	8.19	1.63	3.3	96.7	0.0	1.51	0.70	0.71	0.84	1.24	13816	1796	4	0	6	0	0	logfile
✔	8R47	18881	2025-01-13	2023-11-13	2.25	2.05	2.13	2.3	0.013	2.04	0.0	0.10	15.67	0.02	2.041	0.82	0.00	0.0	100.0	0.0	-4.59	0.54	0.81	6.28	2.3	0.003	0.68	0.0	0.04	16.30	0.00	2.507	7.33	1.77	3.0	97.0	0.0	-3.99	1.04	0.52	0.82	6.08	3780	498	6	0	0	0	0	logfile
✔	8UXX	42788	2025-01-25	2023-11-11	3.2	3.48	3.27	3.5	0.012	1.91	8.0	0.10	15.07	0.02	1.821	0.17	2.29	4.4	95.5	0.1	-2.07	0.64	0.74	3.38	3.5	0.004	0.62	0.0	0.04	15.90	0.00	0.980	4.21	1.57	3.3	96.7	0.0	-0.12	2.06	0.72	0.84	2.57	77402	4916	26	0	27	5	38340	logfile
✔	8UXV	42786	2025-01-15	2023-11-11	3.2	3.35	3.12	3.4	0.003	0.53	0.0	0.04	14.02	0.00	2.094	3.18	0.00	2.6	97.4	0.0	0.80	0.72	0.86	2.93	3.4	0.004	0.57	0.0	0.04	15.75	0.00	2.534	2.49	1.99	3.3	96.7	0.0	0.94	0.91	0.72	0.89	2.54	8065	1041	5	0	0	0	0	logfile
✔	8UY0	42791	2025-01-15	2023-11-11	3.2	3.52	3.23	3.7	0.004	0.55	0.0	0.04	13.39	0.00	2.236	4.62	0.11	1.9	98.1	0.0	0.91	0.55	0.74	2.67	3.7	0.003	0.56	0.0	0.04	15.56	0.00	2.414	3.57	1.24	2.1	97.9	0.0	1.54	0.37	0.56	0.77	2.51	8121	1031	6	0	1	0	0	logfile
✔	8UXT	42775	2025-01-24	2023-11-10	1.77	2.38	1.83	2.2	0.003	0.48	0.0	0.04	16.63	0.00	2.053	4.81	1.45	4.5	95.0	0.5	1.15	0.83	0.85	6.41	2.2	0.003	0.56	0.0	0.04	16.63	0.00	2.212	3.54	1.11	5.4	94.1	0.5	0.54	0.29	0.78	0.84	6.24	21989	1414	1	0	0	0	10719	logfile
✔	8R3Y	18877	2025-01-24	2023-11-10	3.68	3.66	3.56	3.6	0.013	1.98	11.0	0.11	15.13	0.02	2.527	0.45	3.01	7.4	92.3	0.3	-1.59	0.64	0.69	2.61	3.6	0.003	0.68	0.0	0.04	16.33	0.00	2.345	7.16	3.10	6.5	93.5	0.0	-1.40	1.82	0.66	0.71	2.22	20107	1293	4	0	1	0	9975	logfile
✔	8R3Z	18878	2025-01-14	2023-11-10	3.4	4.16	3.41	3.9	0.004	0.65	0.0	0.05	17.44	0.00	1.932	14.50	0.29	3.5	96.5	0.0	-0.21	0.83	0.79	1.95	3.9	0.003	0.58	0.0	0.04	17.67	0.00	1.946	11.23	3.00	3.1	96.9	0.0	0.26	0.51	0.82	0.78	1.53	6389	755	3	6	1	0	0	logfile
✔	8R3T	18874	2025-01-14	2023-11-10	3.1	3.18	2.95	3.4	0.011	2.12	6.0	0.11	14.98	0.01	2.582	0.55	5.45	2.0	96.2	1.8	-1.86	0.37	0.73	5.38	3.4	0.004	0.70	0.0	0.05	13.95	0.00	2.515	3.87	2.24	5.8	93.9	0.3	-3.05	1.75	0.38	0.76	4.50	5438	354	6	0	0	0	2804	logfile
✔	8X2H	38010	2025-01-23	2023-11-09	2.9	3.07	2.88	3.0	0.005	0.85	1.0	0.05	20.16	0.00	2.037	16.30	13.38	8.7	91.1	0.2	-4.22	0.60	0.58	0.86	3.0	0.003	0.73	0.0	0.05	19.46	0.00	2.369	9.91	5.38	7.1	92.8	0.1	-1.70	1.28	0.63	0.63	0.75	19088	2363	2	0	1	0	0	logfile
✔	8X2K	38015	2025-01-15	2023-11-09	3.03	3.27	3.09	3.3	0.005	0.73	2.0	0.05	14.07	0.00	1.909	7.35	0.77	4.9	95.0	0.1	-0.74	0.69	0.82	3.33	3.3	0.005	0.90	0.0	0.04	15.67	0.00	2.379	3.77	1.53	3.3	96.6	0.1	0.35	0.34	0.68	0.84	2.63	8570	1111	6	0	1	2	0	logfile
✔	8UXK	42767	2025-01-23	2023-11-09	3.02	3.35	3.07	3.3	0.003	0.63	0.0	0.04	13.86	0.00	2.027	10.72	0.08	1.6	98.4	0.1	-0.24	0.55	0.83	2.62	3.3	0.003	0.57	2.0	0.04	15.65	0.00	2.244	7.77	1.60	1.0	99.0	0.0	3.76	0.90	0.55	0.84	2.11	72372	9990	37	0	0	0	0	logfile
✔	8R3G	18864	2025-01-18	2023-11-09	4.4	4.64	4.35	4.4	0.013	1.54	0.0	0.10	19.04	0.01	2.243	11.87	0.18	1.7	98.3	0.0	-1.19	0.73	0.52	—	4.3	0.004	0.69	0.0	0.04	18.45	0.00	2.362	17.80	0.00	3.2	96.8	0.0	0.25	1.55	0.86	0.78	—	11985	1340	6	82	0	0	0	logfile
✔	8X2M	38017	2025-01-17	2023-11-09	3.31	4.05	3.32	3.5	0.003	0.63	0.0	0.04	16.67	0.00	2.137	9.92	0.51	5.0	95.0	0.0	-1.93	0.80	0.73	1.96	3.6	0.003	0.75	0.0	0.04	16.93	0.00	2.301	10.31	3.20	6.1	93.9	0.0	-1.41	1.31	0.82	0.80	2.31	10545	1306	6	0	0	0	0	logfile
✔	8UXJ	42766	2025-01-22	2023-11-09	2.71	3.03	2.75	3.0	0.003	0.57	0.0	0.04	11.93	0.00	2.072	7.23	0.04	1.5	98.5	0.0	2.76	0.51	0.82	3.58	3.0	0.004	0.58	1.0	0.03	14.84	0.00	2.144	5.29	1.42	0.8	99.2	0.0	3.79	0.37	0.54	0.85	3.17	69696	9720	36	0	0	0	0	logfile
✔	8X2L	38016	2025-01-14	2023-11-09	2.99	2.32	2.96	3.0	0.006	0.80	0.0	0.05	13.83	0.01	2.102	3.36	0.14	2.6	97.4	0.0	-0.31	0.74	0.76	2.93	3.0	0.004	0.69	0.0	0.04	16.11	0.00	2.242	12.22	3.22	3.6	96.4	0.0	0.35	0.67	0.77	0.81	2.70	7099	885	6	0	9	1	0	logfile

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