Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8X2K	38015	2025-01-15	2023-11-09	3.03	3.27	3.09	3.3	0.005	0.73	2.0	0.05	14.07	0.00	1.909	7.35	0.77	4.9	95.0	0.1	-0.74	0.69	0.82	3.33	3.3	0.005	0.90	0.0	0.04	15.67	0.00	2.379	3.77	1.53	3.3	96.6	0.1	0.35	0.34	0.68	0.84	2.63	8570	1111	6	0	1	2	0	logfile
✔	8X2H	38010	2025-01-23	2023-11-09	2.9	3.07	2.88	3.0	0.005	0.85	1.0	0.05	20.16	0.00	2.037	16.30	13.38	8.7	91.1	0.2	-4.22	0.60	0.58	0.86	3.0	0.003	0.73	0.0	0.05	19.46	0.00	2.369	9.91	5.38	7.1	92.8	0.1	-1.70	1.28	0.63	0.63	0.75	19088	2363	2	0	1	0	0	logfile
✔	8R3G	18864	2025-01-18	2023-11-09	4.4	4.64	4.35	4.4	0.013	1.54	0.0	0.10	19.04	0.01	2.243	11.87	0.18	1.7	98.3	0.0	-1.19	0.73	0.52	—	4.3	0.004	0.69	0.0	0.04	18.45	0.00	2.362	17.80	0.00	3.2	96.8	0.0	0.25	1.55	0.86	0.78	—	11985	1340	6	82	0	0	0	logfile
✔	8R33	18859	2025-01-15	2023-11-08	2.29	2.45	2.30	2.4	0.003	0.56	0.0	0.04	18.61	0.00	2.171	8.27	2.39	2.0	98.0	0.0	1.52	0.67	0.86	4.80	2.4	0.003	0.55	0.0	0.04	17.25	0.00	2.577	6.53	0.88	2.0	98.0	0.0	2.61	0.28	0.66	0.85	4.20	8066	978	6	0	8	328	0	logfile
✔	8UWS	42680	2025-01-21	2023-11-08	2.65	2.19	2.70	2.1	0.005	0.73	0.0	0.05	16.68	0.01	1.576	6.62	2.74	4.5	95.2	0.3	-0.72	0.82	0.83	4.68	2.1	0.004	0.80	1.0	0.05	17.41	0.01	2.095	7.20	4.01	4.2	95.6	0.2	-0.17	0.76	0.81	0.83	4.56	17137	2133	8	0	4	0	0	logfile
✔	8R35	18861	2025-01-14	2023-11-08	3.12	3.46	3.18	3.4	0.003	0.55	0.0	0.04	16.59	0.00	2.214	6.87	0.90	2.4	97.6	0.0	1.44	0.68	0.87	1.80	3.4	0.003	0.57	0.0	0.04	16.78	0.00	2.567	5.85	3.23	2.4	97.6	0.0	2.20	0.26	0.66	0.87	1.80	7150	953	2	0	0	0	0	logfile
✔	8R34	18860	2025-01-15	2023-11-08	2.62	2.82	2.62	2.9	0.004	0.65	0.0	0.04	19.66	0.00	2.167	7.50	2.41	2.3	97.7	0.0	0.34	0.62	0.83	2.93	2.9	0.003	0.57	0.0	0.04	18.56	0.00	2.289	5.50	1.65	2.2	97.8	0.0	1.84	0.85	0.61	0.83	2.88	7762	970	6	0	14	62	0	logfile
✔	8UX1	42685	2025-01-21	2023-11-08	2.5	2.29	—	2.8	0.006	0.64	0.0	0.04	25.88	0.00	2.132	5.20	1.27	2.2	97.6	0.2	1.25	0.86	0.86	4.03	2.8	0.004	0.57	0.0	0.04	26.12	0.00	2.560	5.10	1.72	2.4	97.6	0.1	1.63	1.07	0.86	0.86	3.63	16395	1332	12	291	0	0	0	logfile
✔	8X1N	37997	2025-01-14	2023-11-08	3.31	3.46	3.37	3.5	0.003	0.59	0.0	0.04	16.86	0.00	2.251	2.85	0.00	2.4	97.6	0.0	2.01	0.72	0.84	2.46	3.5	0.003	0.53	0.0	0.04	16.37	0.00	2.580	2.43	2.72	3.6	96.4	0.0	2.23	0.29	0.69	0.83	1.44	4763	591	3	0	8	0	0	logfile
✔	8X1i	37996	2025-01-14	2023-11-07	4.0	4.14	2.43	4.1	0.012	1.87	1.0	0.10	15.72	0.01	1.891	0.00	2.93	5.2	94.8	0.0	-2.05	0.41	0.68	—	4.1	0.003	0.68	0.0	0.04	15.07	0.00	1.809	5.93	0.98	5.7	94.3	0.0	-0.18	1.92	0.43	0.77	—	5722	369	2	0	2	0	2840	logfile
✔	8X1B	37989	2025-01-14	2023-11-06	2.59	2.29	2.63	2.1	0.003	0.50	0.0	0.04	16.59	0.00	2.236	5.35	1.48	3.4	96.6	0.0	0.52	0.84	0.84	3.42	2.1	0.003	0.53	0.0	0.05	16.76	0.00	2.602	5.45	0.74	3.4	96.6	0.0	0.58	0.90	0.83	0.83	3.14	5106	658	1	0	0	0	0	logfile
✔	8UWL	42676	2025-01-15	2023-11-06	2.8	2.30	—	2.9	0.013	1.69	10.0	0.12	12.38	0.01	2.079	5.47	1.43	3.0	97.0	0.0	1.81	0.83	0.83	4.24	2.9	0.003	0.62	0.0	0.04	16.35	0.00	2.564	2.29	2.41	2.5	97.5	0.0	1.59	1.05	0.83	0.85	3.72	8626	1123	6	0	1	0	0	logfile
✔	8X15	37984	2025-01-17	2023-11-06	3.2	3.28	3.28	3.0	0.004	0.69	0.0	0.05	17.10	0.01	1.169	13.08	4.96	4.6	95.2	0.2	-2.12	0.60	0.44	0.83	3.0	0.004	0.69	0.0	0.04	19.18	0.00	2.252	10.51	2.49	5.4	94.6	0.0	-0.02	0.98	0.76	0.82	1.17	55488	6279	33	274	8	0	0	logfile
✔	8X19	37988	2025-01-17	2023-11-06	3.2	3.02	3.29	3.2	0.005	0.83	0.0	0.05	20.52	0.01	1.500	20.98	7.61	6.6	92.9	0.5	-2.03	0.59	0.48	1.30	3.1	0.003	0.71	0.0	0.04	20.73	0.01	2.068	10.13	2.40	4.9	94.9	0.2	-0.22	2.13	0.74	0.81	1.20	56704	6372	34	294	11	0	0	logfile
✔	8UWC	42661	2025-01-15	2023-11-06	2.27	2.89	2.21	2.7	0.008	0.88	0.0	0.05	15.70	0.01	1.906	13.81	1.67	5.4	94.6	0.0	-1.61	0.72	0.69	2.89	2.7	0.003	0.65	0.0	0.05	16.42	0.00	2.352	7.29	2.15	3.1	96.9	0.0	-0.22	0.82	0.70	0.72	2.97	7767	494	2	0	1	97	3821	logfile
✔	8R2H	18842	2025-01-18	2023-11-06	2.42	2.05	2.56	1.6	0.003	0.52	0.0	0.04	10.24	0.01	1.914	10.77	0.55	2.6	97.4	0.0	-0.09	0.76	0.72	3.71	1.6	0.003	0.59	0.0	0.04	14.01	0.00	1.936	9.25	1.57	2.3	97.7	0.0	0.13	0.39	0.75	0.72	3.11	11484	1394	4	0	4	0	0	logfile
✔	8X0W	37983	2025-01-14	2023-11-06	3.1	4.21	3.15	3.7	0.003	0.60	0.0	0.04	21.59	0.00	2.229	8.75	0.51	5.4	94.6	0.0	1.39	0.67	0.86	1.45	3.7	0.002	0.68	0.0	0.04	16.39	0.00	2.456	6.13	1.77	4.5	95.5	0.0	1.52	0.31	0.67	0.87	1.67	7368	935	7	0	8	0	0	logfile
✔	8X16	37985	2025-01-15	2023-11-06	3.29	3.58	3.36	3.7	0.005	0.53	0.0	0.04	8.10	0.00	2.203	8.34	0.32	2.0	97.9	0.1	-1.18	0.56	0.60	1.26	3.6	0.003	0.69	0.0	0.04	14.73	0.00	2.501	10.35	2.99	3.4	96.6	0.0	0.57	1.16	0.63	0.79	1.57	8751	1126	6	0	1	0	0	logfile
✔	8R2i	18848	2025-01-23	2023-11-06	2.9	3.54	2.94	3.3	0.021	1.62	0.0	0.09	21.20	0.01	2.210	12.01	0.00	3.3	96.7	0.0	1.58	0.75	0.83	3.31	3.3	0.003	0.88	0.0	0.04	16.14	0.00	2.030	9.07	0.90	3.2	96.8	0.0	1.85	0.34	0.72	0.88	3.02	18054	1923	21	0	58	5	0	logfile
✔	8X17	37986	2025-01-15	2023-11-06	3.19	3.42	3.20	3.4	0.005	0.56	0.0	0.04	12.62	0.00	2.053	3.79	0.32	1.6	98.4	0.0	-0.96	0.62	0.78	2.23	3.4	0.003	0.56	0.0	0.04	15.30	0.00	2.523	6.09	1.92	2.7	97.3	0.0	1.02	1.05	0.62	0.84	2.37	8753	1127	6	0	1	0	0	logfile

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