Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UWL	42676	2025-01-15	2023-11-06	2.8	2.30	—	2.9	0.013	1.69	10.0	0.12	12.38	0.01	2.079	5.47	1.43	3.0	97.0	0.0	1.81	0.83	0.83	4.24	2.9	0.003	0.62	0.0	0.04	16.35	0.00	2.564	2.29	2.41	2.5	97.5	0.0	1.59	1.05	0.83	0.85	3.72	8626	1123	6	0	1	0	0	logfile
✔	8X0G	37978	2025-01-18	2023-11-04	3.0	3.25	2.87	3.2	0.007	0.87	0.0	0.06	17.33	0.01	2.251	10.31	0.76	7.9	91.7	0.4	-1.70	0.71	0.86	2.78	3.2	0.003	0.66	0.0	0.04	16.78	0.00	2.583	7.45	2.87	5.9	94.1	0.0	-0.57	0.38	0.73	0.87	2.52	12129	1530	6	0	4	31	0	logfile
✔	8X0H	37979	2025-01-18	2023-11-04	4.1	4.27	3.91	4.1	0.004	0.69	0.0	0.05	14.99	0.00	2.051	17.13	0.00	10.8	89.1	0.1	-1.72	0.68	0.74	—	4.1	0.003	0.67	0.0	0.04	14.19	0.00	2.576	12.38	0.00	8.8	91.0	0.1	-1.32	0.32	0.67	0.73	—	12317	1558	4	0	4	0	0	logfile
✔	8X0M	37982	2025-01-26	2023-11-04	3.5	2.62	3.64	3.4	0.004	0.70	1.0	0.05	16.79	0.01	2.146	9.45	0.68	4.6	95.4	0.0	-0.18	0.49	0.77	1.96	2.3	0.004	0.70	0.0	0.05	17.07	0.00	2.230	8.11	3.81	4.7	95.3	0.0	-0.23	1.17	0.50	0.78	2.25	24274	3128	22	0	17	0	0	logfile
✔	8X0L	37981	2025-01-26	2023-11-04	3.5	2.50	3.52	2.2	0.004	0.71	0.0	0.05	16.76	0.01	2.094	8.71	1.04	3.6	96.4	0.0	-0.60	0.42	0.78	2.60	2.2	0.004	0.67	0.0	0.05	16.90	0.00	2.218	6.18	5.62	3.9	96.1	0.0	-0.53	0.42	0.41	0.78	2.86	24555	3165	24	0	18	0	0	logfile
✔	8X0E	37976	2025-01-18	2023-11-04	3.4	3.82	3.30	3.5	0.007	0.99	0.0	0.06	16.10	0.01	2.191	9.40	1.29	8.0	91.8	0.2	-1.21	0.72	0.84	2.10	3.5	0.003	0.67	0.0	0.04	15.54	0.00	2.530	6.71	2.72	6.0	93.9	0.1	-0.53	0.40	0.73	0.86	1.80	12086	1530	4	0	4	0	0	logfile
✔	8UVU	42629	2025-01-18	2023-11-04	3.0	3.23	2.99	3.2	0.003	0.60	0.0	0.04	14.70	0.00	2.246	8.69	0.00	4.3	95.7	0.0	1.70	0.68	0.83	2.96	3.2	0.003	0.62	0.0	0.04	16.29	0.00	2.448	8.40	2.50	5.1	94.9	0.0	2.35	0.26	0.64	0.82	2.96	11976	1516	8	0	8	0	0	logfile
✔	8UVT	42628	2025-01-18	2023-11-04	2.9	3.16	2.88	3.1	0.003	0.47	0.0	0.04	15.28	0.00	2.233	8.27	0.00	3.7	96.3	0.0	2.31	0.67	0.83	2.02	3.1	0.004	0.57	0.0	0.04	17.17	0.00	2.575	8.79	2.51	3.8	96.2	0.0	3.02	0.39	0.67	0.84	1.83	12104	1544	4	0	0	0	0	logfile
✔	8X06	37970	2025-01-14	2023-11-03	3.24	3.88	3.24	3.6	0.002	0.58	0.0	0.04	18.50	0.00	2.261	7.83	0.25	3.8	96.2	0.0	-0.94	0.77	0.76	1.37	3.6	0.003	0.61	0.0	0.04	18.31	0.00	2.531	7.40	3.95	7.5	92.5	0.0	-1.58	1.14	0.79	0.84	2.03	7053	869	4	0	0	0	0	logfile
✔	8UVi	42621	2025-01-15	2023-11-03	2.53	2.73	2.54	2.8	0.004	0.75	4.0	0.05	14.60	0.01	2.093	9.69	0.72	2.1	97.9	0.0	1.41	0.60	0.80	2.95	2.8	0.003	0.66	0.0	0.04	14.73	0.01	2.264	10.45	2.99	1.4	98.6	0.0	2.31	5.05	0.62	0.84	2.63	8212	994	4	0	22	0	0	logfile
✔	8R2D	18839	2025-01-22	2023-11-03	3.9	4.17	3.98	4.2	0.004	0.70	0.0	0.04	15.08	0.00	1.943	14.71	0.00	7.0	93.0	0.0	-3.71	0.73	0.77	1.16	4.2	0.003	0.69	0.0	0.04	16.60	0.00	2.164	9.91	1.77	4.1	95.9	0.0	-0.39	1.42	0.72	0.77	0.84	18276	2342	5	0	2	0	0	logfile
✔	8R1J	18818	2025-01-21	2023-11-02	3.2	3.58	—	3.5	0.003	0.54	1.0	0.04	14.46	0.00	1.901	8.01	0.00	7.1	92.7	0.2	-1.29	0.72	0.79	2.68	3.5	0.003	0.54	1.0	0.04	15.65	0.00	2.149	6.23	0.66	6.6	93.2	0.2	-0.69	0.34	0.72	0.81	2.61	67775	4237	7	0	0	0	33874	logfile
✔	8R23	18834	2025-01-18	2023-11-02	3.2	3.07	3.25	3.2	0.004	0.66	0.0	0.04	14.39	0.01	1.978	6.96	0.00	6.6	93.4	0.0	-5.33	0.80	0.83	2.57	3.2	0.003	0.62	0.0	0.04	16.24	0.00	2.030	4.96	1.73	4.2	95.8	0.0	-0.12	0.44	0.80	0.84	1.28	11979	1548	4	0	2	0	0	logfile
✔	8X01	37964	2025-01-19	2023-11-02	3.01	3.35	—	3.3	0.005	0.75	1.0	0.05	15.84	0.01	2.259	11.44	0.49	1.8	98.2	0.0	1.10	0.71	0.84	2.54	3.3	0.005	0.75	0.0	0.05	16.45	0.00	2.469	10.47	2.57	2.5	97.5	0.0	1.09	0.86	0.67	0.83	2.78	12742	1608	6	0	2	0	0	logfile
✔	8UV3	42604	2025-01-18	2023-11-02	2.72	2.82	2.64	2.8	0.010	1.06	0.0	0.06	14.69	0.01	1.851	5.72	0.39	8.0	91.8	0.2	-3.67	0.38	0.84	3.98	2.8	0.006	0.84	0.0	0.05	16.19	0.01	1.877	3.20	1.73	6.0	93.9	0.1	-1.72	0.37	0.38	0.77	3.57	12069	1534	9	0	3	276	0	logfile
✔	8UUZ	42602	2025-01-13	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.8	0.004	0.86	0.0	0.05	16.44	0.00	2.571	27.43	4.78	5.6	94.4	0.0	-2.39	1.28	0.76	0.59	1.07	2258	300	2	0	0	0	0	logfile
✔	8R22	18833	2025-01-20	2023-11-02	3.9	3.57	3.81	3.6	0.004	0.67	0.0	0.04	14.65	0.01	2.098	10.00	0.00	9.3	90.7	0.0	-4.23	0.79	0.79	1.68	3.7	0.002	0.61	0.0	0.04	16.15	0.00	2.137	6.20	2.23	5.7	94.3	0.0	-0.66	0.49	0.78	0.78	1.09	15069	1950	5	0	1	0	0	logfile
✔	8WZX	37963	2025-01-14	2023-11-02	2.88	2.79	2.64	3.0	0.009	0.97	0.0	0.06	10.36	0.00	2.604	10.76	0.00	2.0	98.0	0.0	-4.13	0.54	0.86	6.58	3.0	0.006	1.11	1.0	0.05	15.29	0.01	2.408	11.11	2.43	3.2	96.7	0.1	-4.36	0.41	0.53	0.89	5.70	7300	1020	20	0	0	0	0	logfile
✔	8UUX	42600	2025-01-18	2023-11-02	2.74	2.87	2.62	2.9	0.002	0.63	0.0	0.05	15.62	0.01	2.133	3.59	0.95	5.7	94.2	0.1	-1.63	0.41	0.85	3.94	2.9	0.003	0.64	0.0	0.05	16.33	0.01	2.370	2.74	2.05	5.9	94.0	0.1	-1.00	0.24	0.42	0.85	3.59	12084	1532	9	0	3	310	0	logfile
✔	8UVH	42620	2025-01-14	2023-11-02	2.33	2.52	2.23	2.7	0.004	0.64	0.0	0.04	11.90	0.01	2.255	9.55	0.26	1.1	98.9	0.0	2.35	0.56	0.76	3.21	2.7	0.003	0.60	0.0	0.04	14.72	0.01	2.581	9.69	0.51	1.2	98.8	0.0	2.43	0.38	0.55	0.78	3.00	7158	918	2	0	0	0	0	logfile

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