Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8R22	18833	2025-01-20	2023-11-02	3.9	3.57	3.81	3.6	0.004	0.67	0.0	0.04	14.65	0.01	2.098	10.00	0.00	9.3	90.7	0.0	-4.23	0.79	0.79	1.68	3.7	0.002	0.61	0.0	0.04	16.15	0.00	2.137	6.20	2.23	5.7	94.3	0.0	-0.66	0.49	0.78	0.78	1.09	15069	1950	5	0	1	0	0	logfile
✔	8R1J	18818	2025-01-21	2023-11-02	3.2	3.58	—	3.5	0.003	0.54	1.0	0.04	14.46	0.00	1.901	8.01	0.00	7.1	92.7	0.2	-1.29	0.72	0.79	2.68	3.5	0.003	0.54	1.0	0.04	15.65	0.00	2.149	6.23	0.66	6.6	93.2	0.2	-0.69	0.34	0.72	0.81	2.61	67775	4237	7	0	0	0	33874	logfile
✔	8X01	37964	2025-01-19	2023-11-02	3.01	3.35	—	3.3	0.005	0.75	1.0	0.05	15.84	0.01	2.259	11.44	0.49	1.8	98.2	0.0	1.10	0.71	0.84	2.54	3.3	0.005	0.75	0.0	0.05	16.45	0.00	2.469	10.47	2.57	2.5	97.5	0.0	1.09	0.86	0.67	0.83	2.78	12742	1608	6	0	2	0	0	logfile
✔	8R23	18834	2025-01-18	2023-11-02	3.2	3.07	3.25	3.2	0.004	0.66	0.0	0.04	14.39	0.01	1.978	6.96	0.00	6.6	93.4	0.0	-5.33	0.80	0.83	2.57	3.2	0.003	0.62	0.0	0.04	16.24	0.00	2.030	4.96	1.73	4.2	95.8	0.0	-0.12	0.44	0.80	0.84	1.28	11979	1548	4	0	2	0	0	logfile
✔	8WZJ	37954	2025-01-21	2023-11-01	2.7	2.61	2.75	2.7	0.014	1.68	0.0	0.08	14.34	0.00	2.368	1.63	0.99	4.0	95.8	0.2	-1.14	0.57	0.73	5.36	2.7	0.003	0.59	0.0	0.04	16.46	0.00	2.482	4.35	2.16	3.2	96.8	0.0	0.71	0.51	0.75	0.86	4.54	16368	1988	8	0	8	0	0	logfile
✔	8UUE	42580	2025-01-16	2023-11-01	3.96	4.16	3.95	4.1	0.011	1.34	3.0	0.05	18.95	0.01	2.131	16.88	1.45	10.8	88.3	1.0	-2.50	0.79	0.81	1.60	4.1	0.004	0.74	0.0	0.04	18.85	0.01	2.433	9.49	5.27	10.4	88.7	0.9	-1.82	0.95	0.79	0.81	1.51	8984	1150	4	0	0	0	0	logfile
✔	8WZ2	37944	2025-01-16	2023-11-01	2.73	3.66	2.90	3.4	0.004	0.58	0.0	0.08	7.42	0.00	2.029	4.69	0.10	1.0	99.0	0.0	-1.03	0.72	0.78	3.28	3.3	0.003	0.77	0.0	0.04	15.56	0.00	2.451	9.00	2.40	2.5	97.5	0.0	0.67	4.13	0.70	0.85	2.80	9355	1202	6	0	0	0	0	logfile
✔	8WZK	37955	2025-01-21	2023-11-01	2.4	2.26	2.50	2.4	0.016	1.80	0.0	0.08	14.60	0.01	2.379	2.54	1.87	3.8	96.0	0.2	-1.19	0.51	0.67	5.64	2.4	0.003	0.69	0.0	0.04	16.08	0.00	2.536	5.86	2.10	3.4	96.6	0.0	0.67	1.19	0.71	0.81	4.07	16368	1988	8	0	8	0	0	logfile
✔	8WZ3	37945	2025-01-20	2023-11-01	3.19	3.41	3.21	3.4	0.004	0.60	0.0	0.05	17.00	0.00	2.025	6.12	0.17	6.0	94.0	0.0	-4.35	0.76	0.82	2.98	3.4	0.004	0.65	0.0	0.04	16.06	0.00	2.551	4.80	2.56	6.2	93.8	0.0	-1.39	0.40	0.74	0.84	3.09	15741	2016	12	0	3	0	0	logfile
✔	8WZ4	37946	2025-01-13	2023-11-01	3.13	3.33	3.13	3.4	0.010	0.89	0.0	0.06	13.98	0.00	2.114	3.62	0.26	8.6	91.4	0.0	-4.05	0.68	0.79	3.83	3.4	0.004	0.64	0.0	0.04	16.66	0.00	2.481	4.63	4.90	4.9	95.1	0.0	-0.32	1.75	0.69	0.84	3.20	3441	439	3	0	0	0	0	logfile
✔	8WZ5	37947	2025-01-20	2023-11-01	3.51	3.76	3.47	3.8	0.004	0.87	3.0	0.05	15.77	0.01	1.637	7.38	0.83	4.8	95.2	0.0	-1.34	0.62	0.70	1.30	3.8	0.005	0.88	1.0	0.05	17.18	0.00	1.949	11.44	3.06	4.6	95.4	0.0	-1.44	1.00	0.71	0.76	1.32	15645	2013	9	0	0	0	0	logfile
✔	8UUK	42588	2025-01-17	2023-11-01	2.5	3.07	2.51	2.9	0.004	0.67	0.0	0.05	21.91	0.00	2.180	11.02	1.53	4.4	95.6	0.0	1.07	0.59	0.84	3.54	3.0	0.003	0.63	0.0	0.04	16.22	0.00	2.539	10.46	2.39	5.0	94.9	0.2	1.30	0.32	0.59	0.83	3.24	10242	1226	4	0	30	0	0	logfile
✔	8R1F	18809	2025-01-21	2023-11-01	3.67	3.92	3.69	3.9	0.008	0.98	0.0	0.07	11.49	0.02	2.496	0.36	0.21	2.3	97.7	0.0	-0.70	0.58	0.53	1.69	3.9	0.003	0.57	0.0	0.04	15.09	0.00	2.152	5.17	1.17	2.9	97.1	0.0	1.27	2.08	0.70	0.68	1.10	16629	1025	5	0	3	0	8263	logfile
✔	8WZB	37949	2025-01-21	2023-11-01	3.28	2.56	—	3.1	0.005	1.12	0.0	0.05	17.82	0.01	2.290	5.87	0.74	4.2	95.7	0.0	-2.34	0.79	0.76	1.83	3.0	0.005	0.77	0.0	0.05	17.98	0.01	2.468	12.84	3.85	4.5	95.4	0.1	-0.85	0.55	0.82	0.80	2.27	17594	2181	11	0	0	0	0	logfile
✔	8UTP	42545	2025-01-25	2023-10-31	3.2	2.45	3.19	3.3	0.005	0.85	1.0	0.05	18.53	0.01	1.930	4.23	0.94	4.2	95.4	0.4	-0.04	0.65	0.85	3.10	3.3	0.006	0.66	0.0	0.05	17.29	0.00	1.873	4.85	2.54	4.1	95.8	0.1	0.80	1.73	0.65	0.86	2.89	23792	2982	16	2	11	0	0	logfile
✔	8UTQ	42546	2025-01-21	2023-10-31	3.1	3.03	3.11	3.4	0.005	0.81	0.0	0.05	18.60	0.01	1.891	3.87	0.22	4.1	95.8	0.1	0.10	0.67	0.86	3.21	3.4	0.005	0.66	0.0	0.05	16.36	0.00	1.830	5.74	1.60	3.8	96.2	0.0	0.87	0.94	0.67	0.89	2.97	16825	2110	12	2	8	0	0	logfile
✔	8UTT	42549	2025-01-25	2023-10-31	3.1	2.46	3.19	3.3	0.007	0.96	0.0	0.06	19.18	0.01	1.190	6.78	1.60	5.3	94.3	0.4	-0.45	0.60	0.84	2.90	3.3	0.003	0.64	0.0	0.04	17.20	0.01	1.949	5.37	2.07	3.9	96.0	0.1	1.05	0.55	0.60	0.85	2.40	23744	2974	16	2	11	0	0	logfile
✔	8UTN	42543	2025-01-25	2023-10-31	3.1	2.25	3.07	2.2	0.006	0.89	2.0	0.05	18.88	0.01	1.920	5.11	1.64	3.7	95.5	0.8	-0.26	0.63	0.82	3.47	2.2	0.003	0.61	0.0	0.04	17.17	0.00	1.909	5.19	3.05	3.8	96.2	0.1	0.66	0.95	0.63	0.83	3.28	23784	2981	16	2	11	0	0	logfile
✔	8WYi	37929	2025-01-13	2023-10-31	3.9	4.16	3.88	4.1	0.004	1.06	0.0	0.04	18.20	0.01	2.068	17.74	1.91	11.2	87.2	1.6	-1.04	0.49	0.67	0.70	4.1	0.004	0.86	0.0	0.04	18.75	0.00	2.358	11.01	7.27	11.4	87.7	0.9	-0.30	1.24	0.61	0.76	0.84	4659	589	8	0	0	0	0	logfile
✔	8UTR	42547	2025-01-16	2023-10-31	3.3	2.47	3.29	3.4	0.004	0.78	0.0	0.05	18.17	0.01	1.777	3.27	0.66	4.2	95.6	0.2	0.03	0.59	0.84	3.09	3.4	0.003	0.63	0.0	0.04	17.19	0.00	1.977	5.24	1.80	3.8	96.2	0.0	0.73	0.47	0.60	0.85	2.77	9792	1230	7	1	4	0	0	logfile

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