Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UT9	42534	2025-01-18	2023-10-30	3.3	3.58	3.40	3.6	0.007	1.16	0.0	0.06	14.13	0.01	1.682	5.53	0.00	3.0	97.0	0.0	0.24	0.66	0.77	2.80	3.6	0.004	0.86	1.0	0.05	15.47	0.00	2.095	9.39	2.44	3.3	96.7	0.0	-0.57	0.47	0.68	0.80	2.27	12707	1450	17	0	249	0	0	logfile
✔	8UT7	42532	2025-01-19	2023-10-30	2.7	2.95	2.77	2.9	0.006	1.10	0.0	0.06	12.34	0.01	2.173	2.54	0.00	1.9	98.1	0.0	0.80	0.64	0.84	5.63	2.9	0.004	0.62	0.0	0.04	14.23	0.00	2.447	5.16	1.33	2.7	97.3	0.0	-0.19	0.82	0.68	0.87	4.92	13046	1460	11	0	257	0	0	logfile
✔	8WYC	37923	2025-01-24	2023-10-30	3.0	3.25	3.03	3.3	0.005	0.81	0.0	0.04	20.08	0.00	1.861	38.58	6.67	2.9	97.1	0.0	0.84	0.72	0.85	2.66	3.3	0.004	0.63	0.0	0.04	18.84	0.00	2.388	10.39	4.50	3.2	96.8	0.0	-0.01	0.92	0.72	0.87	2.69	22385	2680	10	0	4	0	0	logfile
✔	8WXF	37905	2025-01-21	2023-10-29	4.0	4.27	4.10	4.2	0.003	0.71	0.0	0.05	17.29	0.01	2.188	15.21	0.75	4.8	95.1	0.1	-1.25	0.74	0.80	—	4.2	0.003	0.66	0.0	0.04	17.56	0.00	2.407	11.21	3.29	4.2	95.7	0.1	-0.52	0.98	0.78	0.82	—	16380	2190	3	0	0	0	0	logfile
✔	8WXE	37904	2025-01-13	2023-10-28	4.0	4.62	3.94	4.5	0.004	0.86	0.0	0.04	18.18	0.01	2.178	19.10	2.04	6.0	94.0	0.0	-0.75	0.55	0.72	—	4.5	0.004	0.86	0.0	0.04	18.57	0.00	2.490	12.32	6.92	5.2	94.8	0.0	-0.23	0.93	0.56	0.73	—	4388	548	9	0	1	0	0	logfile
✔	8USP	42510	2025-01-15	2023-10-28	3.3	4.27	—	4.0	0.003	0.66	8.0	0.04	14.46	0.00	1.875	7.99	0.15	3.0	97.0	0.0	1.03	0.80	0.79	0.78	4.0	0.003	0.64	0.0	0.04	16.24	0.00	2.366	7.96	1.68	3.1	96.9	0.0	1.36	1.15	0.83	0.83	1.02	47406	5892	6	0	0	0	0	logfile
✔	8WX3	37899	2025-01-14	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.003	0.60	0.0	0.04	15.14	0.00	2.576	5.79	2.94	3.5	96.3	0.2	1.41	1.81	0.56	0.84	2.70	7498	974	2	0	0	0	0	logfile
✔	8WX0	37896	2025-01-19	2023-10-27	3.7	3.44	3.68	3.6	0.003	0.58	0.0	0.05	18.73	0.00	2.207	10.32	0.57	4.5	95.3	0.2	0.35	0.65	0.82	2.04	3.6	0.003	0.60	0.0	0.04	18.83	0.00	2.475	7.44	5.26	4.2	95.7	0.2	0.34	0.24	0.68	0.82	1.76	13672	1782	7	15	0	0	0	logfile
✔	8USB	42506	2025-01-22	2023-10-27	2.73	3.26	2.93	3.2	0.003	0.55	0.0	0.04	16.86	0.00	1.925	11.01	1.81	2.4	97.6	0.0	1.26	0.72	0.83	2.38	3.2	0.004	0.63	1.0	0.04	17.18	0.00	1.947	9.89	2.39	2.7	97.3	0.0	1.65	0.27	0.75	0.85	2.25	70143	8842	34	0	13	0	0	logfile
✔	8QZM	18778	2025-01-18	2023-10-27	3.1	3.83	3.12	3.4	0.004	0.60	0.0	0.05	28.22	0.00	2.257	5.84	0.31	1.3	98.7	0.0	1.83	0.91	0.88	2.08	3.4	0.004	0.58	0.0	0.03	27.93	0.00	2.431	6.39	2.02	1.8	98.2	0.0	2.83	0.37	0.91	0.89	1.82	12141	783	11	290	0	0	0	logfile
✔	8QZL	18777	2025-01-13	2023-10-27	3.42	3.92	3.58	3.8	0.002	0.46	0.0	0.04	14.79	0.00	1.984	5.88	0.04	2.9	97.1	0.0	-0.21	0.70	0.84	2.12	3.8	0.004	0.55	0.0	0.04	15.61	0.00	2.303	4.91	0.72	4.0	96.0	0.0	0.54	0.39	0.72	0.86	1.45	47085	3069	5	0	2	0	23721	logfile
✔	8USC	42507	2025-01-22	2023-10-27	3.1	3.64	3.31	3.5	0.003	0.63	0.0	0.04	17.62	0.00	1.962	15.32	3.45	5.9	93.8	0.3	0.67	0.77	0.81	1.25	3.5	0.005	0.75	0.0	0.04	17.98	0.00	1.862	15.13	4.54	6.4	93.4	0.2	0.60	1.10	0.78	0.84	1.27	70061	8856	35	0	24	0	0	logfile
✔	8WX2	37898	2025-01-14	2023-10-27	3.44	3.85	3.44	3.7	0.002	0.65	0.0	0.04	14.51	0.01	2.033	8.01	1.99	6.5	93.0	0.5	-2.25	0.56	0.68	0.73	3.7	0.003	0.85	0.0	0.05	16.69	0.01	2.549	12.31	3.56	7.7	92.3	0.0	0.82	0.64	0.59	0.74	0.75	6800	880	2	0	0	0	0	logfile
✔	8WX4	37900	2025-01-14	2023-10-27	3.12	3.35	3.11	3.4	0.004	0.71	0.0	0.04	14.16	0.00	2.031	4.66	1.53	3.5	96.5	0.0	-1.64	0.60	0.80	1.59	3.4	0.003	0.57	0.0	0.04	15.21	0.00	2.576	4.53	1.79	2.8	97.2	0.0	1.39	1.31	0.56	0.82	2.55	7512	976	6	0	0	0	0	logfile
✔	8WX1	37897	2025-01-13	2023-10-27	3.64	3.87	3.67	4.0	0.003	0.74	0.0	0.04	13.80	0.00	2.297	9.47	0.00	4.7	94.9	0.4	0.07	0.51	0.72	0.89	3.9	0.003	0.71	0.0	0.04	16.73	0.01	2.479	11.75	2.87	6.3	93.7	0.0	2.36	0.69	0.54	0.76	1.54	3926	500	1	0	0	0	0	logfile
✔	8WX5	37901	2025-01-13	2023-10-27	3.91	4.09	3.85	4.0	0.004	0.87	0.0	0.04	14.58	0.00	2.184	14.86	0.50	6.6	93.0	0.4	-1.72	0.50	0.78	1.63	4.0	0.003	0.75	0.0	0.04	16.93	0.00	2.533	13.33	2.99	6.2	93.8	0.0	0.74	1.00	0.51	0.80	0.74	3857	504	2	0	0	0	0	logfile
✔	8QYH	18754	2025-01-20	2023-10-26	2.4	2.62	2.47	2.7	0.008	1.03	0.0	0.04	17.93	0.00	2.177	8.50	0.12	1.4	98.6	0.0	3.24	0.65	0.85	3.41	2.7	0.003	0.49	0.0	0.04	17.30	0.00	2.390	6.80	1.11	1.2	98.8	0.0	3.66	0.33	0.67	0.87	3.22	15925	1837	19	0	10	484	0	logfile
✔	8QYY	18766	2025-01-20	2023-10-26	2.56	2.85	2.76	2.9	0.009	1.40	0.0	0.05	18.64	0.00	2.153	8.37	0.00	1.9	98.1	0.0	2.90	0.69	0.84	3.51	2.9	0.005	0.80	1.0	0.04	18.59	0.00	2.075	8.67	1.12	1.9	98.1	0.0	2.89	1.57	0.66	0.84	3.21	14829	1717	19	0	15	313	0	logfile
✔	8URT	42500	2025-01-14	2023-10-26	3.8	3.27	3.04	3.3	0.008	1.44	0.0	0.04	21.44	0.00	1.995	5.02	1.90	2.7	97.3	0.0	2.20	0.54	0.76	2.55	3.3	0.002	0.51	0.0	0.04	17.34	0.00	1.999	3.90	2.05	2.3	97.7	0.0	2.70	0.25	0.62	0.80	2.50	6622	774	6	0	14	2	0	logfile
✔	8URU	42501	2025-01-15	2023-10-26	3.7	3.90	3.70	3.9	0.005	0.98	1.0	0.05	21.44	0.01	2.058	21.18	3.21	10.9	88.1	0.9	-2.97	0.70	0.74	1.42	3.9	0.003	0.76	0.0	0.04	21.15	0.00	2.010	10.65	4.65	8.3	91.0	0.6	-1.86	0.46	0.70	0.74	1.29	8895	1001	6	43	1	0	0	logfile

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