Table showing results for January 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QYo	18760	2025-01-13	2023-10-26	2.84	3.26	2.99	3.2	0.006	0.66	0.0	0.05	13.09	0.00	2.208	3.23	0.02	2.6	97.4	0.0	0.66	0.75	0.84	3.57	3.2	0.003	0.52	0.0	0.04	16.01	0.00	2.484	3.22	1.55	1.8	98.2	0.0	1.45	0.32	0.71	0.83	2.96	47940	6174	28	0	0	0	0	logfile
✔	8QYJ	18755	2025-01-22	2023-10-26	2.73	3.16	2.80	3.0	0.002	0.44	0.0	0.04	13.65	0.00	2.235	2.65	0.00	2.0	98.0	0.0	1.76	0.79	0.88	3.08	3.0	0.002	0.49	0.0	0.04	15.91	0.00	2.455	2.26	1.47	2.2	97.8	0.0	1.90	0.27	0.75	0.86	2.75	19402	2498	13	0	3	0	0	logfile
✔	8QZ9	18773	2025-01-25	2023-10-26	2.95	3.51	3.11	3.3	0.003	0.48	0.0	0.04	13.37	0.00	2.202	3.64	0.00	4.1	95.9	0.0	0.82	0.79	0.87	3.07	3.3	0.002	0.53	0.0	0.04	15.55	0.00	2.485	2.85	1.09	3.5	96.5	0.0	1.20	0.90	0.75	0.84	2.44	24217	3213	16	0	21	0	0	logfile
✔	8URT	42500	2025-01-14	2023-10-26	3.8	3.27	3.04	3.3	0.008	1.44	0.0	0.04	21.44	0.00	1.995	5.02	1.90	2.7	97.3	0.0	2.20	0.54	0.76	2.55	3.3	0.002	0.51	0.0	0.04	17.34	0.00	1.999	3.90	2.05	2.3	97.7	0.0	2.70	0.25	0.62	0.80	2.50	6622	774	6	0	14	2	0	logfile
✔	8QYY	18766	2025-01-20	2023-10-26	2.56	2.85	2.76	2.9	0.009	1.40	0.0	0.05	18.64	0.00	2.153	8.37	0.00	1.9	98.1	0.0	2.90	0.69	0.84	3.51	2.9	0.005	0.80	1.0	0.04	18.59	0.00	2.075	8.67	1.12	1.9	98.1	0.0	2.89	1.57	0.66	0.84	3.21	14829	1717	19	0	15	313	0	logfile
✔	8URQ	42497	2025-01-15	2023-10-26	3.3	3.57	3.32	3.6	0.017	1.25	1.0	0.06	21.28	0.01	1.769	18.16	4.61	10.8	88.9	0.3	-3.76	0.71	0.71	1.02	3.6	0.004	0.70	0.0	0.04	20.82	0.00	1.880	9.23	4.16	10.3	89.7	0.0	-2.89	0.52	0.71	0.73	1.10	8569	993	6	31	1	0	0	logfile
✔	8QYK	18756	2025-01-21	2023-10-26	2.07	2.21	2.13	2.2	0.008	1.37	0.0	0.05	18.96	0.01	2.122	7.71	0.19	1.4	98.6	0.0	3.54	0.69	0.85	4.06	2.2	0.003	0.54	0.0	0.04	18.02	0.00	2.248	6.61	0.68	1.4	98.6	0.0	3.74	0.92	0.68	0.86	4.22	16182	1817	19	0	15	866	0	logfile
✔	8URU	42501	2025-01-15	2023-10-26	3.7	3.90	3.70	3.9	0.005	0.98	1.0	0.05	21.44	0.01	2.058	21.18	3.21	10.9	88.1	0.9	-2.97	0.70	0.74	1.42	3.9	0.003	0.76	0.0	0.04	21.15	0.00	2.010	10.65	4.65	8.3	91.0	0.6	-1.86	0.46	0.70	0.74	1.29	8895	1001	6	43	1	0	0	logfile
✔	8QYH	18754	2025-01-20	2023-10-26	2.4	2.62	2.47	2.7	0.008	1.03	0.0	0.04	17.93	0.00	2.177	8.50	0.12	1.4	98.6	0.0	3.24	0.65	0.85	3.41	2.7	0.003	0.49	0.0	0.04	17.30	0.00	2.390	6.80	1.11	1.2	98.8	0.0	3.66	0.33	0.67	0.87	3.22	15925	1837	19	0	10	484	0	logfile
✔	8QYS	18761	2025-01-18	2023-10-26	3.89	4.28	3.89	4.1	0.003	0.57	2.0	0.04	14.29	0.00	2.222	9.04	0.00	10.1	89.9	0.0	-1.10	0.85	0.85	1.27	4.1	0.004	0.80	5.0	0.04	16.09	0.00	2.165	8.11	2.30	9.1	90.9	0.0	-1.03	0.29	0.85	0.85	1.09	57862	7588	34	0	0	0	0	logfile
✔	8WWP	37895	2025-01-18	2023-10-26	3.12	3.73	3.38	3.6	0.003	0.51	0.0	0.04	17.17	0.00	2.262	9.97	0.07	4.3	95.5	0.2	0.23	0.74	0.72	0.91	3.6	0.004	0.65	0.0	0.05	17.78	0.00	2.462	10.65	6.30	4.8	95.2	0.0	0.26	0.94	0.68	0.68	1.13	13125	1749	3	0	0	0	0	logfile
✔	8WWi	37889	2025-01-15	2023-10-25	3.43	3.62	3.55	3.6	0.002	0.41	0.0	0.04	8.18	0.00	2.085	7.35	0.95	1.7	98.3	0.0	0.41	0.60	0.67	1.27	3.6	0.003	0.72	0.0	0.04	14.25	0.00	2.306	11.78	3.38	2.7	97.3	0.0	0.63	2.31	0.61	0.69	0.56	8803	1143	5	0	0	0	0	logfile
✔	8UR7	42486	2025-01-14	2023-10-25	3.9	4.14	3.48	4.1	0.009	1.28	0.0	0.07	9.35	0.00	2.021	7.52	0.66	4.7	95.3	0.0	-0.32	0.73	0.74	2.83	4.1	0.003	0.63	0.0	0.04	13.07	0.00	2.627	6.40	1.55	2.2	97.4	0.4	0.30	1.59	0.77	0.79	2.77	5772	789	6	0	9	0	0	logfile
✔	8UR5	42482	2025-01-14	2023-10-25	3.7	3.90	2.45	4.0	0.011	1.45	0.0	0.09	9.30	0.01	2.011	6.45	1.71	4.3	95.2	0.4	-0.71	0.66	0.72	3.62	3.9	0.003	0.72	0.0	0.05	12.69	0.00	2.608	5.35	3.13	3.6	95.5	0.9	-0.70	1.63	0.69	0.79	3.14	4989	696	6	0	12	0	0	logfile
✔	8WWM	37893	2025-01-16	2023-10-25	2.81	3.07	2.97	3.0	0.004	0.48	0.0	0.04	9.44	0.00	2.218	5.91	0.93	1.7	98.3	0.0	0.54	0.64	0.80	4.16	3.0	0.003	0.59	0.0	0.04	14.33	0.00	2.584	7.27	2.79	2.0	98.0	0.0	0.97	1.59	0.61	0.77	3.69	8963	1160	6	0	0	0	0	logfile
✔	8UR8	42487	2025-01-22	2023-10-25	2.97	3.69	3.09	3.5	0.006	0.64	0.0	0.05	13.53	0.00	2.241	4.99	0.00	2.7	97.3	0.0	-0.82	0.84	0.86	3.75	3.5	0.004	0.52	0.0	0.04	15.34	0.00	2.502	6.02	0.58	2.7	97.3	0.0	0.98	0.55	0.84	0.86	3.45	18752	2316	4	0	0	0	0	logfile
✔	8URE	42491	2025-01-16	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.7	0.009	0.83	0.0	0.03	5.57	0.01	2.468	3.69	0.00	5.7	94.3	0.0	-1.13	0.68	0.82	0.83	—	8896	1792	8	0	0	0	0	logfile
✔	8WWK	37891	2025-01-16	2023-10-25	2.61	2.77	2.69	2.7	0.002	0.39	0.0	0.04	8.41	0.00	2.205	4.78	0.72	0.8	99.2	0.0	1.11	0.70	0.83	4.70	2.7	0.003	0.54	0.0	0.04	14.11	0.00	2.537	5.68	2.68	2.2	97.8	0.0	1.37	0.44	0.70	0.84	3.78	8967	1160	6	0	0	0	0	logfile
✔	8WWJ	37890	2025-01-15	2023-10-25	3.03	3.30	3.24	3.2	0.003	0.43	0.0	0.04	8.31	0.00	2.118	5.67	0.63	1.8	98.2	0.0	1.11	0.66	0.79	4.07	3.2	0.004	0.60	0.0	0.04	14.17	0.00	2.518	6.24	2.00	2.6	97.4	0.0	1.34	0.66	0.67	0.80	3.35	8821	1143	5	0	0	0	0	logfile
✔	8QYC	18750	2025-01-14	2023-10-25	2.75	3.04	2.85	3.1	0.002	0.44	0.0	0.04	11.07	0.00	2.161	5.15	1.29	2.6	97.4	0.0	1.17	0.63	0.83	4.58	3.0	0.004	0.55	0.0	0.04	15.58	0.00	2.496	4.46	1.93	2.9	97.1	0.0	0.97	0.91	0.59	0.81	3.96	7198	893	2	0	1	0	0	logfile

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