Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8BHQ	16066	2024-02-20	2022-10-31	3.3	3.04	3.34	3.4	0.007	1.38	0.0	0.04	8.53	0.01	2.140	1.61	0.00	1.8	98.2	0.0	2.16	0.67	0.80	3.80	3.4	0.003	0.53	0.0	0.04	12.69	0.00	2.026	3.62	1.07	2.5	97.5	0.0	1.04	1.71	0.67	0.81	3.39	27215	1680	10	0	10	0	13415	logfile
✔	8BHi	16055	2024-02-20	2022-10-31	2.67	3.28	2.79	3.1	0.010	1.01	0.0	0.04	12.04	0.00	2.022	3.11	0.00	2.7	97.3	0.0	1.52	0.72	0.86	5.53	3.1	0.003	0.51	0.0	0.04	13.49	0.00	2.137	4.10	1.01	2.2	97.8	0.0	1.28	1.11	0.70	0.86	5.17	27220	1680	10	0	10	0	13415	logfile
✔	8BHo	16063	2024-02-20	2022-10-31	2.93	3.61	2.99	3.4	0.013	0.71	0.0	0.04	7.53	0.01	2.092	2.60	0.00	0.9	99.1	0.0	2.52	0.75	0.81	4.12	3.4	0.002	0.58	0.0	0.04	11.66	0.00	2.122	4.58	0.60	2.0	98.0	0.0	1.99	1.31	0.72	0.79	3.69	27190	1680	10	0	10	0	13415	logfile
✔	8BHS	16068	2024-02-20	2022-10-31	3.24	3.78	3.26	3.5	0.020	0.75	0.0	0.04	7.51	0.00	2.122	5.68	0.00	1.2	98.8	0.0	1.23	0.77	0.83	3.91	3.5	0.002	0.48	0.0	0.04	10.96	0.00	2.226	6.38	0.74	1.3	98.7	0.0	1.33	0.69	0.78	0.84	3.60	27170	1680	10	0	10	0	13415	logfile
✔	8HBW	34645	2024-02-13	2022-10-31	2.57	2.69	2.51	2.7	0.010	1.05	0.0	0.05	16.26	0.01	2.199	7.29	0.00	2.2	97.8	0.0	1.60	0.63	0.87	4.58	2.7	0.003	0.54	0.0	0.04	16.66	0.00	2.141	7.75	3.26	2.2	97.8	0.0	2.98	1.22	0.58	0.87	3.92	3309	414	3	0	4	0	0	logfile
✔	8EZA	28732	2024-02-21	2022-10-31	4.39	4.32	4.42	3.8	0.015	2.00	127.0	0.13	16.51	0.02	1.932	2.57	1.57	6.5	93.3	0.2	-2.97	0.78	0.58	—	3.8	0.003	0.69	0.0	0.04	15.35	0.00	2.160	11.71	0.00	3.8	96.2	0.0	0.12	3.59	0.81	0.68	—	93588	11307	24	122	42	0	0	logfile
✔	8BHR	16067	2024-02-20	2022-10-31	3.38	3.40	3.32	3.4	0.004	0.80	0.0	0.04	7.33	0.01	2.050	1.32	0.00	0.9	99.1	0.0	2.26	0.70	0.83	4.51	3.4	0.005	0.54	0.0	0.04	14.05	0.00	2.133	4.06	2.55	2.2	97.8	0.0	0.54	1.39	0.70	0.85	3.58	27215	1680	10	0	10	0	13415	logfile
✔	8HBV	34644	2024-02-13	2022-10-31	2.51	2.70	2.51	2.7	0.009	0.96	0.0	0.05	15.84	0.01	2.209	8.10	0.00	2.0	98.0	0.0	1.54	0.61	0.88	4.41	2.7	0.003	0.53	0.0	0.04	17.02	0.00	2.204	7.03	1.78	2.2	97.8	0.0	2.61	0.92	0.61	0.89	3.96	3279	414	3	0	3	0	0	logfile
✔	8BHA	16050	2024-02-20	2022-10-30	2.67	3.29	2.72	3.1	0.008	0.58	0.0	0.04	7.91	0.00	2.088	1.76	0.00	1.2	98.8	0.0	2.00	0.74	0.88	5.51	3.1	0.003	0.49	0.0	0.04	12.53	0.00	2.110	4.06	0.60	1.9	98.1	0.0	1.71	0.81	0.72	0.88	4.58	27220	1680	10	0	10	0	13415	logfile
✔	8BH6	16048	2024-02-25	2022-10-30	3.7	4.20	3.87	3.9	0.004	0.72	2.0	0.04	22.90	0.01	2.148	23.15	1.06	6.5	93.3	0.1	-3.22	0.82	0.66	0.41	3.6	0.006	0.84	0.0	0.04	23.13	0.01	1.834	36.64	3.69	11.9	88.1	0.0	-2.67	2.04	0.85	0.73	0.35	51548	2311	20	1547	0	0	0	logfile
✔	8BHB	16051	2024-02-20	2022-10-30	2.54	3.17	2.64	3.0	0.003	0.42	0.0	0.04	7.20	0.02	2.149	2.09	0.00	0.9	99.1	0.0	2.13	0.73	0.88	5.71	3.0	0.003	0.46	0.0	0.04	12.74	0.00	2.272	2.35	1.34	2.3	97.7	0.0	2.27	0.65	0.72	0.88	5.11	27250	1680	15	0	10	65	13415	logfile
✔	8BH7	16049	2024-02-25	2022-10-30	4.23	9.20	—	4.5	0.005	0.83	0.0	0.07	25.73	0.01	2.136	63.21	0.43	7.8	92.2	0.0	-3.39	0.91	0.80	—	4.5	0.004	0.80	0.0	0.04	25.35	0.01	1.941	58.93	0.05	11.7	88.3	0.0	-2.72	1.32	0.92	0.82	—	52615	2464	21	1541	0	0	0	logfile
✔	8HBN	34638	2024-02-13	2022-10-29	3.81	4.36	3.77	4.0	0.007	1.24	5.0	0.06	18.57	0.01	2.254	13.99	6.10	7.4	90.0	2.7	-1.66	0.66	0.81	1.11	4.0	0.003	0.78	0.0	0.04	17.54	0.00	2.217	10.01	4.58	6.4	93.4	0.2	-0.43	1.56	0.66	0.83	1.42	4189	536	2	0	0	0	0	logfile
✔	8EYX	28723	2024-02-18	2022-10-29	4.5	4.99	4.61	4.1	0.006	0.76	1.0	0.05	12.87	0.00	1.857	33.88	1.18	9.7	89.7	0.6	-1.73	0.86	0.74	—	4.1	0.002	0.61	0.0	0.04	12.76	0.00	2.159	14.82	0.12	6.6	93.1	0.2	-1.11	1.17	0.89	0.82	—	14298	1773	6	0	0	0	0	logfile
✔	8EYY	28724	2024-02-18	2022-10-29	4.9	6.21	5.32	4.3	0.003	0.58	0.0	0.04	12.98	0.00	2.165	21.05	0.06	7.2	92.6	0.2	-1.16	0.89	0.81	—	4.3	0.002	0.56	0.0	0.04	13.13	0.00	2.206	18.99	0.00	6.9	93.1	0.1	-0.88	1.12	0.90	0.84	—	14301	1773	6	0	0	0	0	logfile
✔	8EZ0	28725	2024-02-17	2022-10-29	3.7	4.09	3.78	3.9	0.004	0.63	0.0	0.04	15.91	0.00	2.130	13.69	0.12	7.3	92.7	0.0	-1.65	0.85	0.82	2.02	3.9	0.003	0.59	0.0	0.04	16.58	0.00	2.140	13.80	2.67	7.5	92.5	0.0	-1.48	1.15	0.85	0.82	2.01	14640	1815	6	0	0	0	0	logfile
✔	8HBF	34627	2024-02-14	2022-10-28	3.1	3.32	—	3.3	0.010	0.84	1.0	0.05	15.94	0.01	1.951	9.76	0.46	3.2	96.6	0.2	-0.23	0.73	0.82	2.61	3.3	0.003	0.54	0.0	0.04	15.93	0.00	2.052	7.90	2.39	2.3	97.7	0.0	1.04	0.29	0.73	0.83	2.49	8448	1095	4	0	6	0	0	logfile
✔	8HBD	34619	2024-02-14	2022-10-28	2.99	2.40	2.80	3.0	0.003	0.71	0.0	0.04	16.47	0.00	1.912	13.34	1.85	3.8	96.0	0.2	0.26	0.74	0.76	1.67	2.2	0.004	0.68	0.0	0.04	17.42	0.00	2.023	14.32	4.69	3.7	96.3	0.0	0.44	0.58	0.77	0.80	1.82	8803	1158	6	0	0	0	0	logfile
✔	8EYT	28720	2024-02-22	2022-10-28	2.8	3.17	2.92	2.9	0.018	1.45	18.0	0.09	22.87	0.01	1.450	12.50	1.31	5.1	93.9	0.9	-0.61	0.81	0.73	1.93	2.9	0.006	0.67	0.0	0.04	22.33	0.01	2.013	9.42	3.08	4.0	95.8	0.2	-0.10	0.59	0.89	0.90	1.84	50699	2588	21	1415	0	0	0	logfile
✔	8BGV	16039	2024-02-13	2022-10-28	3.27	3.26	3.18	3.4	0.009	1.72	0.0	0.10	12.41	0.01	2.452	0.84	1.49	6.7	93.3	0.0	-3.78	0.46	0.89	5.03	3.3	0.005	0.73	0.0	0.05	13.32	0.00	2.275	4.07	0.85	3.8	96.2	0.0	-2.53	1.30	0.41	0.87	3.59	4109	539	7	0	0	0	0	logfile

• ← previous
• Page 112 of 588
• next →