Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HAH	34589	2024-02-17	2022-10-26	3.9	5.19	3.80	2.8	0.003	0.55	0.0	0.03	24.02	0.00	2.274	8.74	0.00	2.6	97.4	0.0	1.59	0.83	0.62	0.32	2.8	0.004	0.68	0.0	0.04	26.92	0.00	2.147	18.27	1.80	3.6	96.4	0.0	0.98	2.57	0.90	0.81	0.66	17096	1287	11	328	0	0	0	logfile
✔	8HAE	34586	2024-02-20	2022-10-26	4.55	4.75	4.64	4.6	0.009	1.04	0.0	0.07	10.84	0.01	1.994	6.14	0.27	8.3	91.7	0.0	-3.55	0.81	0.75	—	4.6	0.002	0.71	4.0	0.12	11.72	0.00	1.940	7.61	0.00	6.5	93.5	0.0	-1.80	1.33	0.80	0.74	—	26698	1690	2	0	0	0	13272	logfile
✔	8EY2	28666	2024-02-13	2022-10-26	3.5	3.71	3.55	3.8	0.003	0.60	0.0	0.04	13.04	0.00	2.149	14.08	0.00	5.8	94.2	0.0	-0.29	0.78	0.80	2.62	3.8	0.003	0.68	0.0	0.04	15.96	0.00	2.120	15.52	1.28	6.5	93.5	0.0	-1.11	1.10	0.79	0.81	2.38	4908	634	4	0	0	0	0	logfile
✔	8HAi	34591	2024-02-16	2022-10-26	4.7	4.54	4.59	4.0	0.003	0.58	0.0	0.03	24.52	0.00	2.249	10.79	0.00	1.5	98.5	0.0	1.74	0.83	0.72	—	4.0	0.004	0.60	0.0	0.03	25.94	0.00	2.119	17.26	0.00	2.0	98.0	0.0	1.76	1.66	0.86	0.79	—	16547	1310	11	294	0	0	0	logfile
✔	8HAM	34596	2024-02-17	2022-10-26	4.5	4.52	4.33	3.7	0.003	0.56	0.0	0.03	25.16	0.00	2.260	9.62	0.00	1.4	98.6	0.0	2.08	0.84	0.77	—	3.7	0.003	0.59	0.0	0.03	26.47	0.00	2.202	13.46	0.00	2.1	97.9	0.0	2.15	2.21	0.87	0.84	—	17177	1288	11	330	0	0	0	logfile
✔	8HAK	34594	2024-02-16	2022-10-26	4.5	4.61	4.45	3.6	0.003	0.65	0.0	0.04	24.74	0.00	2.214	12.85	0.00	2.2	97.8	0.0	0.55	0.87	0.75	—	3.6	0.003	0.65	0.0	0.04	26.08	0.00	2.182	16.37	0.00	2.9	97.1	0.0	0.98	0.84	0.89	0.81	—	16342	1285	11	292	0	0	0	logfile
✔	8EXY	28665	2024-02-19	2022-10-26	3.2	4.03	3.42	3.5	0.005	0.62	0.0	0.04	22.95	0.01	2.020	5.39	20.94	9.4	89.8	0.8	-3.15	0.87	0.84	1.62	3.5	0.004	0.62	0.0	0.04	19.97	0.00	1.917	7.03	4.25	5.6	94.3	0.1	-0.78	0.70	0.90	0.89	1.80	25711	3033	10	105	4	0	0	logfile
✔	8HAN	34597	2024-02-16	2022-10-26	4.2	4.31	4.16	3.4	0.003	0.54	0.0	0.03	24.99	0.00	2.219	8.41	0.00	1.1	98.9	0.0	2.88	0.83	0.72	—	2.9	0.004	0.61	0.0	0.04	26.40	0.00	2.156	16.96	0.00	2.5	97.5	0.0	2.19	0.80	0.86	0.80	—	16180	1261	11	294	0	0	0	logfile
✔	8EXT	28662	2024-02-14	2022-10-25	4.6	4.06	4.52	7.3	0.026	2.04	0.0	0.12	10.97	0.01	2.014	14.28	2.03	5.3	93.9	0.8	-0.66	0.53	0.45	—	7.3	0.003	0.67	0.0	0.04	12.33	0.00	2.172	14.72	0.00	7.6	92.4	0.0	-0.61	1.16	0.60	0.62	—	8846	1062	4	0	2	0	0	logfile
✔	8EXQ	28659	2024-02-14	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	5.9	0.003	0.72	0.0	0.04	12.63	0.00	2.230	15.59	0.00	4.5	95.3	0.2	-0.38	2.51	0.57	0.62	—	9304	1108	4	0	2	0	0	logfile
✔	8EXA	28656	2024-02-13	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	22.74	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.49	0.0	0.03	22.62	0.00	2.172	15.58	3.64	3.6	96.4	0.0	0.43	1.14	0.60	0.68	3.89	5539	341	4	139	0	0	0	logfile
✔	8EXP	28658	2024-02-14	2022-10-25	4.2	4.47	4.29	4.6	0.019	1.74	0.0	0.10	10.69	0.01	2.031	5.52	0.60	3.4	96.4	0.2	-0.04	0.53	0.43	—	4.5	0.003	0.69	0.0	0.04	13.16	0.00	2.069	15.10	0.00	5.0	95.0	0.0	0.50	1.11	0.64	0.70	—	9024	1078	4	0	2	0	0	logfile
✔	8EXS	28661	2024-02-14	2022-10-25	4.3	3.73	4.19	3.8	0.020	1.72	0.0	0.10	10.18	0.01	1.722	4.78	0.58	3.4	96.6	0.0	0.10	0.55	0.48	—	3.7	0.003	0.68	0.0	0.04	12.83	0.00	2.049	15.50	0.00	4.7	95.3	0.0	0.52	2.80	0.63	0.65	—	9320	1112	4	0	2	0	0	logfile
✔	8H9F	34565	2024-02-15	2022-10-25	2.69	3.04	2.84	3.0	0.005	0.69	0.0	0.04	14.64	0.01	2.198	7.68	0.16	2.4	97.6	0.0	-2.36	0.66	0.86	3.41	3.1	0.003	0.56	0.0	0.04	16.28	0.00	2.223	7.92	2.23	1.9	98.1	0.0	1.14	0.84	0.55	0.83	2.92	12265	1596	22	0	3	0	0	logfile
✔	8EXR	28660	2024-02-13	2022-10-25	3.8	4.08	3.96	4.1	0.026	1.94	0.0	0.11	12.16	0.01	2.016	3.98	0.00	2.8	96.9	0.3	-0.66	0.58	0.68	1.29	4.1	0.003	0.70	0.0	0.04	16.49	0.01	2.172	13.83	2.48	3.3	96.7	0.0	-0.69	1.25	0.54	0.67	0.04	5111	590	5	0	7	0	0	logfile
✔	8H9E	34564	2024-02-19	2022-10-25	2.53	2.86	2.66	2.9	0.008	0.80	0.0	0.05	14.54	0.01	1.956	5.74	0.00	2.7	97.2	0.1	-1.86	0.75	0.89	4.37	2.9	0.002	0.53	0.0	0.04	16.50	0.00	2.006	6.52	1.44	1.8	98.2	0.0	0.90	0.84	0.65	0.87	3.76	24214	3162	14	0	10	0	0	logfile
✔	8H9S	34580	2024-02-23	2022-10-25	2.53	2.96	—	3.0	0.006	0.69	0.0	0.04	15.01	0.00	1.895	6.70	0.05	2.9	97.0	0.1	-2.13	0.74	0.83	3.89	3.0	0.003	0.57	0.0	0.04	16.61	0.00	1.945	7.06	1.40	2.1	97.9	0.0	1.01	0.83	0.63	0.85	3.34	38930	5064	36	0	13	0	0	logfile
✔	8H9M	34573	2024-02-15	2022-10-25	3.0	3.41	3.18	3.4	0.004	0.60	0.0	0.04	13.76	0.01	2.218	9.32	0.00	4.0	96.0	0.0	-2.47	0.64	0.83	2.41	3.4	0.004	0.86	0.0	0.04	16.44	0.00	2.142	9.40	2.31	2.1	97.9	0.1	2.09	0.56	0.62	0.85	1.89	12083	1596	19	0	0	0	0	logfile
✔	8H9U	34582	2024-02-23	2022-10-25	2.61	3.03	—	3.0	0.006	0.71	0.0	0.04	14.86	0.01	1.921	8.72	0.05	3.0	96.9	0.1	-3.00	0.72	0.83	3.49	3.0	0.003	0.64	0.0	0.04	16.83	0.00	2.021	9.11	1.73	2.2	97.8	0.0	0.64	0.57	0.64	0.84	3.00	38481	5026	33	0	10	0	0	logfile
✔	8H9G	34566	2024-02-13	2022-10-25	2.95	3.31	3.17	3.3	0.008	0.77	0.0	0.05	14.93	0.01	2.278	10.74	0.00	5.8	94.2	0.0	-2.39	0.34	0.81	2.01	3.3	0.003	0.58	0.0	0.04	17.78	0.00	2.159	6.56	2.82	4.4	95.6	0.0	2.46	0.90	0.33	0.81	1.93	3381	421	3	0	0	0	0	logfile

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