Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EX8	28654	2024-02-13	2022-10-24	4.17	4.37	4.02	4.3	0.007	0.96	0.0	0.05	14.00	0.01	2.138	20.49	0.00	5.1	94.9	0.0	-0.72	0.56	0.74	—	4.4	0.003	0.64	0.0	0.04	14.24	0.00	2.179	13.50	0.00	2.7	97.3	0.0	1.19	0.54	0.53	0.71	—	3177	414	1	0	0	0	0	logfile
✔	8EX7	28653	2024-02-13	2022-10-24	3.53	3.77	3.48	3.8	0.004	0.69	0.0	0.04	13.31	0.01	2.211	6.36	0.00	4.2	95.8	0.0	0.68	0.59	0.76	2.20	3.8	0.003	0.60	0.0	0.04	15.23	0.00	2.215	7.14	2.69	2.7	97.3	0.0	2.31	0.38	0.59	0.75	1.40	3177	414	1	0	0	0	0	logfile
✔	8EWi	28646	2024-02-13	2022-10-23	3.5	2.81	3.63	2.1	0.003	0.53	0.0	0.04	12.21	0.00	2.153	14.61	5.25	5.7	94.2	0.1	-0.22	0.68	0.66	0.83	1.9	0.003	0.69	0.0	0.04	14.47	0.00	2.124	16.75	3.78	5.9	94.0	0.1	-0.13	0.46	0.68	0.65	0.66	55708	7100	8	0	12	0	0	logfile
✔	8EWG	28645	2024-02-14	2022-10-23	2.9	3.04	2.81	3.0	0.004	0.81	0.0	0.05	22.25	0.01	2.216	5.36	1.43	8.3	91.7	0.0	-0.89	0.80	0.85	1.86	3.0	0.004	0.65	0.0	0.04	21.99	0.00	2.114	7.61	1.98	9.1	90.9	0.0	1.36	0.42	0.78	0.85	1.80	9616	1017	2	56	0	0	0	logfile
✔	8H8J	34549	2024-02-14	2022-10-23	3.2	2.26	3.27	2.1	0.003	0.64	0.0	0.04	10.39	0.00	1.939	9.85	2.59	2.3	97.6	0.1	-0.78	0.71	0.72	2.45	2.0	0.003	0.61	0.0	0.04	13.95	0.00	2.155	12.41	4.21	3.7	96.3	0.0	0.67	0.52	0.74	0.77	2.28	8842	1139	6	0	5	0	0	logfile
✔	8H8C	34542	2024-02-17	2022-10-22	3.36	3.50	3.41	3.5	0.002	0.47	0.0	0.04	13.15	0.00	2.223	7.53	1.83	9.1	90.9	0.0	-4.07	0.67	0.73	2.31	3.5	0.003	0.66	0.0	0.04	16.53	0.00	2.115	9.84	3.49	13.6	86.4	0.0	-3.43	0.69	0.71	0.82	2.83	16940	2078	4	0	0	0	0	logfile
✔	8H8A	34540	2024-02-14	2022-10-22	3.25	3.39	3.26	3.4	0.002	0.50	0.0	0.04	12.99	0.00	2.298	6.57	1.55	8.7	91.2	0.1	-3.31	0.71	0.79	2.16	3.4	0.006	0.77	0.0	0.05	15.71	0.00	2.159	7.06	2.89	14.3	85.6	0.1	-2.65	1.15	0.77	0.90	4.20	8454	1039	2	0	0	0	0	logfile
✔	8H8B	34541	2024-02-14	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.002	0.63	0.0	0.04	15.44	0.00	2.252	7.10	2.25	9.3	90.7	0.0	-1.80	0.62	0.74	0.84	3.61	8344	1027	1	0	0	0	0	logfile
✔	8BEW	16011	2024-02-18	2022-10-22	3.49	3.73	3.58	3.7	0.003	0.74	0.0	0.05	14.61	0.00	2.171	4.97	0.09	4.1	95.7	0.2	-1.10	0.73	0.74	1.44	3.7	0.003	0.59	0.0	0.04	16.36	0.00	2.082	8.10	1.92	4.5	95.4	0.1	-0.08	0.45	0.73	0.83	1.29	21004	2704	12	0	24	0	0	logfile
✔	8EWF	28644	2024-02-13	2022-10-22	3.92	4.61	4.05	4.4	0.004	0.68	0.0	0.04	16.92	0.00	1.761	21.32	0.88	6.6	93.4	0.0	-1.26	0.51	0.66	0.79	4.4	0.006	0.85	2.0	0.05	16.66	0.00	1.831	21.76	5.17	7.6	92.4	0.0	-1.20	1.90	0.53	0.79	0.88	56534	3697	17	0	9	0	27869	logfile
✔	8H7Z	34526	2024-02-13	2022-10-21	3.07	3.23	3.02	3.2	0.003	0.63	0.0	0.04	12.59	0.00	2.210	6.35	0.00	3.4	96.6	0.0	-0.04	0.60	0.72	2.56	3.2	0.003	0.64	0.0	0.04	14.52	0.00	2.236	5.72	3.33	3.7	96.3	0.0	0.30	1.49	0.67	0.82	2.65	4885	631	3	0	0	0	0	logfile
✔	8BEJ	16005	2024-02-20	2022-10-21	3.24	3.94	3.38	3.7	0.002	0.37	0.0	0.04	6.96	0.00	2.170	2.39	0.00	2.1	97.9	0.0	1.70	0.73	0.84	4.62	3.7	0.004	0.52	0.0	0.04	11.60	0.00	1.975	4.97	0.07	2.8	97.2	0.0	1.34	0.94	0.73	0.85	4.08	27065	1680	10	0	5	0	13415	logfile
✔	8BER	16009	2024-02-13	2022-10-21	4.0	4.97	1.55	3.9	0.003	0.61	0.0	0.04	12.68	0.00	2.214	12.92	0.00	4.0	96.0	0.0	2.47	0.55	0.79	—	3.8	0.003	0.60	0.0	0.04	14.36	0.00	2.165	11.56	0.82	4.5	95.5	0.0	3.15	1.18	0.54	0.81	—	3309	414	3	0	0	0	0	logfile
✔	8EW0	28639	2024-02-15	2022-10-21	2.7	2.71	2.65	2.7	0.003	0.57	0.0	0.04	18.44	0.00	2.224	7.02	2.82	1.9	98.0	0.1	1.98	0.68	0.90	3.71	2.7	0.003	0.53	0.0	0.04	18.45	0.00	2.235	7.24	3.65	1.6	98.3	0.1	2.54	0.87	0.68	0.91	3.95	13636	1747	6	0	0	0	0	logfile
✔	8EW2	28640	2024-02-14	2022-10-21	3.1	3.17	3.24	3.1	0.004	0.63	0.0	0.04	17.05	0.00	2.188	13.54	0.46	3.4	96.6	0.0	0.64	0.78	0.88	2.37	3.1	0.004	0.56	0.0	0.04	17.61	0.00	2.143	11.90	3.74	3.3	96.7	0.0	1.15	0.34	0.78	0.88	2.09	10340	1356	4	0	0	0	0	logfile
✔	8EW3	28641	2024-02-15	2022-10-21	2.65159	3.20	2.63	3.0	0.003	0.45	0.0	0.04	10.10	0.00	2.260	2.58	0.16	1.7	98.3	0.0	1.12	0.78	0.90	4.36	3.0	0.003	0.56	0.0	0.04	13.22	0.00	1.057	6.16	0.88	2.2	97.8	0.0	1.52	1.17	0.75	0.89	3.47	11902	1540	9	0	5	0	0	logfile
✔	8EVU	28637	2024-02-15	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.10	0.00	2.279	2.29	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.006	0.58	0.0	0.04	13.47	0.00	1.120	4.37	0.56	2.6	97.4	0.0	1.31	0.41	0.76	0.91	4.01	11902	1540	9	0	5	0	0	logfile
✔	8H7G	34520	2024-02-25	2022-10-20	3.7	3.18	3.58	3.3	0.002	0.57	0.0	0.04	12.37	0.00	2.182	5.83	0.00	5.3	94.6	0.0	-1.27	0.60	0.60	0.67	3.3	0.003	0.64	0.0	0.04	15.37	0.00	2.096	8.12	1.48	6.6	93.4	0.0	-0.26	1.44	0.63	0.67	0.73	52609	6574	14	0	19	0	0	logfile
✔	8BDZ	15995	2024-02-13	2022-10-20	3.13	3.37	1.52	3.1	0.002	0.52	0.0	0.04	12.41	0.00	2.264	6.23	0.00	3.0	97.0	0.0	2.26	0.48	0.84	2.77	3.1	0.003	0.56	0.0	0.04	14.26	0.00	2.204	9.12	1.64	1.7	98.3	0.0	3.02	0.42	0.49	0.86	2.82	3309	414	3	0	0	0	0	logfile
✔	8H7Q	34524	2024-02-18	2022-10-20	3.8	4.38	3.63	3.9	0.003	0.84	3.0	0.05	17.42	0.01	1.442	25.24	0.72	9.7	90.2	0.2	-2.36	0.81	0.75	0.69	3.9	0.003	0.72	0.0	0.04	18.66	0.00	2.162	14.92	2.38	10.0	89.7	0.4	-2.03	0.67	0.82	0.76	0.68	22884	2652	15	82	0	0	0	logfile

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