Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8W77	37336	2024-02-13	2023-08-30	3.61	4.00	3.49	3.9	0.004	0.71	0.0	0.05	10.06	0.01	2.463	0.72	0.00	0.8	99.2	0.0	2.45	0.51	0.74	3.54	3.9	0.003	0.55	0.0	0.04	11.02	0.01	2.401	2.51	2.22	1.6	98.4	0.0	3.79	0.88	0.58	0.78	2.79	1601	260	1	0	0	0	0	logfile
✔	8W7M	37343	2024-02-25	2023-08-30	4.12	6.49	4.21	4.1	0.003	0.58	0.0	0.04	14.05	0.00	1.822	18.62	0.55	4.4	95.5	0.1	-0.19	0.87	0.80	—	4.1	0.004	0.61	0.0	0.04	14.13	0.00	1.819	16.48	0.00	3.8	96.2	0.0	0.81	1.14	0.88	0.84	—	51196	6394	22	8	13	0	0	logfile
✔	8U0V	41788	2024-02-19	2023-08-29	3.89	4.92	4.27	4.3	0.003	0.65	0.0	0.05	16.92	0.00	1.850	32.65	0.32	7.9	91.9	0.2	-1.02	0.88	0.80	0.55	4.3	0.003	0.59	0.0	0.04	17.04	0.00	1.872	32.88	3.01	8.1	91.8	0.2	-0.62	0.33	0.88	0.80	0.50	81859	5553	12	0	10	0	37662	logfile
✔	8U0T	41784	2024-02-13	2023-08-29	3.2	3.49	3.24	3.5	0.013	1.40	2.0	0.09	10.78	0.01	2.291	1.69	0.47	2.7	97.1	0.1	-1.05	0.70	0.79	4.40	3.5	0.004	0.64	0.0	0.04	13.73	0.00	2.215	3.62	1.56	2.3	97.7	0.0	0.69	0.57	0.72	0.85	3.20	6761	849	4	0	10	0	0	logfile
✔	8W6i	37324	2024-02-13	2023-08-29	3.7	4.25	3.88	4.1	0.004	1.10	0.0	0.06	13.87	0.01	2.308	5.93	0.13	5.1	94.6	0.3	-3.33	0.69	0.78	0.81	4.1	0.004	0.82	1.0	0.05	15.92	0.01	2.172	17.35	2.89	5.1	94.7	0.2	-0.56	0.47	0.70	0.80	0.62	7750	1021	6	0	2	0	0	logfile
✔	8W6J	37325	2024-02-14	2023-08-29	3.4	3.85	3.59	3.8	0.006	1.25	4.0	0.06	14.81	0.01	2.303	6.61	0.46	8.0	91.6	0.4	-2.91	0.69	0.77	1.54	3.8	0.003	0.73	0.0	0.04	16.49	0.00	2.153	13.93	3.82	6.8	92.7	0.4	-0.48	0.52	0.70	0.81	1.18	8553	1127	7	0	2	0	0	logfile
✔	8QCP	18331	2024-02-13	2023-08-28	3.21	3.22	3.18	3.3	0.011	1.86	1.0	0.09	11.52	0.01	2.543	0.00	0.00	7.5	92.5	0.0	-2.03	0.31	0.78	5.53	3.3	0.004	0.61	0.0	0.05	16.24	0.00	2.181	2.00	2.04	5.4	94.6	0.0	-2.13	0.96	0.35	0.86	5.39	7002	453	6	0	0	0	3567	logfile
✔	8QCR	18333	2024-02-13	2023-08-28	2.75	2.70	2.59	2.9	0.011	1.78	0.0	0.08	9.60	0.01	2.505	0.00	0.00	3.0	97.0	0.0	-1.85	0.33	0.79	7.24	2.9	0.003	0.52	0.0	0.05	16.01	0.00	2.187	3.81	0.56	0.5	99.5	0.0	-0.39	1.40	0.39	0.87	7.24	3153	204	3	0	0	0	1608	logfile
✔	8TZL	41762	2024-02-17	2023-08-27	3.55	3.98	3.46	3.8	0.004	0.51	0.0	0.04	10.72	0.00	1.922	2.28	0.00	2.5	97.5	0.0	3.76	0.71	0.78	1.99	3.8	0.003	0.50	0.0	0.04	13.98	0.00	1.922	6.46	1.45	3.3	96.7	0.0	3.33	0.73	0.71	0.79	2.38	18875	1398	7	0	4	0	9042	logfile
✔	8TZJ	41760	2024-02-15	2023-08-27	3.51	3.99	3.46	3.9	0.004	0.67	0.0	0.04	12.13	0.00	2.229	2.62	0.15	1.8	98.2	0.0	2.16	0.65	0.77	1.68	3.9	0.002	0.53	0.0	0.03	15.32	0.00	1.915	6.13	0.59	2.3	97.7	0.0	2.65	0.86	0.70	0.80	1.33	13346	846	6	0	4	0	6772	logfile
✔	8TZK	41761	2024-02-17	2023-08-27	3.55	3.97	3.48	3.8	0.004	0.53	0.0	0.04	11.13	0.00	1.922	2.51	0.00	3.1	96.9	0.0	3.24	0.72	0.79	1.99	3.8	0.003	0.52	0.0	0.04	14.50	0.00	1.919	6.96	1.20	4.0	96.0	0.0	2.76	0.77	0.73	0.80	2.16	17077	1149	7	0	4	0	8468	logfile
✔	8TZS	41768	2024-02-13	2023-08-27	3.84	4.01	3.90	4.0	0.005	0.87	0.0	0.05	15.83	0.01	2.170	9.05	0.24	3.6	96.4	0.0	0.65	0.65	0.77	1.99	4.0	0.003	0.71	0.0	0.04	16.71	0.00	2.218	11.21	4.96	4.2	95.8	0.0	1.58	0.94	0.66	0.77	1.31	3914	480	1	0	0	0	0	logfile
✔	8TZP	41765	2024-02-13	2023-08-27	3.23	3.70	3.38	3.6	0.004	0.73	0.0	0.04	15.23	0.01	1.341	5.58	0.27	2.8	97.2	0.0	1.16	0.67	0.84	2.54	3.6	0.005	0.62	0.0	0.04	15.88	0.00	2.141	6.74	2.56	4.5	95.5	0.0	0.48	0.32	0.68	0.85	2.42	6920	859	5	0	2	0	0	logfile
✔	8TZo	41764	2024-02-14	2023-08-27	3.1	3.45	3.14	3.4	0.004	0.70	0.0	0.04	17.02	0.00	2.252	5.32	0.22	3.1	96.9	0.0	0.82	0.62	0.85	2.93	3.4	0.003	0.52	0.0	0.04	15.45	0.00	2.256	6.24	2.05	3.5	96.5	0.0	0.88	0.87	0.61	0.84	2.82	8737	1070	7	0	10	0	0	logfile
✔	8TZB	41753	2024-02-13	2023-08-26	3.1	2.37	—	3.2	0.006	0.65	0.0	0.04	15.01	0.01	2.177	10.41	0.30	5.7	94.1	0.1	-0.33	0.76	0.73	2.27	3.2	0.004	0.60	0.0	0.04	15.93	0.00	2.163	11.34	4.05	6.5	93.4	0.1	-0.39	0.30	0.75	0.72	2.37	7283	1012	3	0	1	0	0	logfile
✔	8TZE	41756	2024-02-13	2023-08-26	2.9	3.19	2.95	3.2	0.006	0.77	0.0	0.05	15.06	0.02	2.140	7.97	1.30	3.8	95.9	0.3	0.15	0.49	0.75	3.59	3.2	0.003	0.52	0.0	0.04	15.99	0.00	2.204	5.90	1.74	3.7	96.2	0.1	0.42	0.35	0.49	0.76	3.45	6255	787	2	0	1	0	0	logfile
✔	8TYo	41727	2024-02-17	2023-08-25	2.75	3.05	2.90	3.1	0.003	0.51	0.0	0.04	13.93	0.00	2.100	4.67	0.00	4.3	95.7	0.0	0.72	0.60	0.78	3.50	3.1	0.005	0.59	0.0	0.05	15.20	0.00	2.184	5.73	1.73	4.6	95.3	0.0	0.57	0.34	0.64	0.82	3.22	19458	2451	7	0	29	0	0	logfile
✔	8QCF	18329	2024-02-21	2023-08-25	2.55	2.63	2.55	2.6	0.003	0.50	0.0	0.04	13.52	0.00	2.221	2.35	0.00	3.4	96.6	0.0	0.71	0.77	0.90	4.05	2.6	0.002	0.50	0.0	0.04	15.74	0.00	2.178	2.99	0.91	3.2	96.8	0.0	0.66	0.89	0.77	0.90	3.44	30751	3910	14	34	1	0	0	logfile
✔	8W4U	37270	2024-02-21	2023-08-25	3.3	3.73	3.53	3.6	0.004	0.65	0.0	0.20	18.56	0.00	1.907	14.20	0.60	2.9	97.1	0.0	2.22	0.68	0.75	1.27	3.6	0.003	0.56	0.0	0.03	17.80	0.00	1.916	14.20	2.51	3.4	96.6	0.0	2.34	1.45	0.69	0.77	1.30	31768	1988	12	0	8	0	15620	logfile
✔	8QCA	18326	2024-02-17	2023-08-25	2.84	3.04	2.86	3.1	0.003	0.46	0.0	0.04	13.84	0.00	2.179	4.24	0.00	2.5	97.5	0.0	0.77	0.63	0.77	3.04	3.1	0.002	0.45	0.0	0.04	15.65	0.00	2.082	14.60	1.65	3.3	96.7	0.0	0.94	0.28	0.70	0.84	2.43	17573	2326	6	4	0	0	117	logfile

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