Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DSP	27657	2024-02-13	2022-07-22	3.3	3.95	3.29	3.7	0.005	0.79	0.0	0.05	12.78	0.00	2.147	13.79	0.47	8.9	90.5	0.6	-1.65	0.69	0.65	0.69	3.7	0.003	0.61	0.0	0.04	15.10	0.00	1.907	15.72	0.94	8.7	90.7	0.6	-1.15	2.24	0.74	0.80	2.64	7745	490	3	0	0	0	3848	logfile
✔	7YK5	33887	2024-02-23	2022-07-21	2.0	1.66	—	1.9	0.014	1.49	0.0	0.09	17.33	0.00	2.157	4.91	7.75	4.0	96.0	0.0	-2.45	0.38	0.48	6.60	1.9	0.005	0.77	0.0	0.05	16.41	0.01	2.346	1.79	1.20	2.7	97.3	0.0	-0.03	1.29	0.81	0.84	6.70	39948	5064	36	0	8	0	0	logfile
✔	8DRQ	27681	2024-02-13	2022-07-21	4.16	4.28	4.60	4.1	0.004	0.89	0.0	0.05	15.60	0.01	2.283	15.85	0.00	5.9	94.1	0.0	-3.30	0.39	0.56	—	4.1	0.004	0.83	0.0	0.05	13.36	0.01	2.086	24.08	0.00	7.7	92.3	0.0	-2.83	1.99	0.42	0.56	—	3321	407	1	0	0	0	0	logfile
✔	8DS3	27682	2024-02-22	2022-07-21	3.07	2.62	3.25	3.2	0.005	0.90	0.0	0.05	17.58	0.01	2.212	11.43	0.28	4.5	95.5	0.0	-1.35	0.71	0.70	1.32	2.0	0.007	0.69	0.0	0.04	16.44	0.00	2.088	14.97	2.13	4.9	95.1	0.0	-0.62	0.49	0.74	0.80	1.29	32601	3888	18	0	21	6	0	logfile
✔	8DRN	27678	2024-02-13	2022-07-21	4.12	4.23	4.09	4.2	0.004	0.98	0.0	0.05	15.67	0.01	2.264	18.85	0.26	6.6	93.4	0.0	-2.70	0.54	0.68	—	4.1	0.003	0.77	0.0	0.05	13.56	0.00	2.180	23.60	0.00	7.6	92.4	0.0	-1.85	1.54	0.59	0.73	—	6578	811	2	0	0	0	0	logfile
✔	8DS6	27684	2024-02-14	2022-07-21	4.9	4.18	4.54	3.7	0.012	1.43	0.0	0.06	10.65	0.01	2.494	0.39	0.00	1.4	98.6	0.0	1.06	0.85	0.67	—	3.7	0.003	0.57	0.0	0.04	11.45	0.01	2.212	9.28	0.00	2.3	97.7	0.0	1.68	1.09	0.85	0.63	—	10135	669	2	0	0	0	5107	logfile
✔	8DRP	27680	2024-02-16	2022-07-21	2.84	2.96	2.83	2.9	0.004	0.71	0.0	0.04	17.64	0.00	2.282	11.96	3.22	2.2	97.8	0.0	1.89	0.65	0.78	2.65	2.9	0.003	0.59	0.0	0.04	17.17	0.00	2.266	10.34	3.56	2.0	97.8	0.2	1.74	0.41	0.66	0.81	2.65	15816	2048	8	0	12	0	0	logfile
✔	8DRo	27679	2024-02-13	2022-07-21	4.06	4.13	4.38	4.1	0.004	0.96	0.0	0.05	15.27	0.01	2.265	14.83	0.40	7.3	92.7	0.0	-3.39	0.46	0.53	—	4.1	0.003	0.79	0.0	0.04	13.73	0.01	2.171	19.16	0.00	9.0	91.0	0.0	-2.44	2.62	0.45	0.51	—	6642	814	2	0	0	0	0	logfile
✔	8DSA	27687	2024-02-15	2022-07-21	3.48	3.75	3.47	3.7	0.005	0.81	0.0	0.05	17.32	0.01	2.201	7.06	0.53	2.6	97.4	0.0	0.06	0.59	0.63	1.34	3.7	0.004	0.68	0.0	0.04	17.05	0.00	2.048	13.45	4.79	3.3	96.7	0.0	1.20	2.75	0.61	0.69	0.77	12039	1418	14	0	4	6	0	logfile
✔	7YK6	33888	2024-02-14	2022-07-21	3.03	2.39	3.06	2.1	0.006	0.73	0.0	0.05	14.22	0.01	2.130	11.24	0.21	5.5	94.4	0.1	-0.18	0.73	0.74	2.51	2.1	0.002	0.57	0.0	0.04	16.31	0.00	2.125	9.91	2.45	4.5	95.5	0.0	0.34	1.12	0.73	0.75	2.04	8736	1118	6	0	1	0	0	logfile
✔	7YK1	33883	2024-02-16	2022-07-21	3.08	2.99	2.80	3.0	0.006	0.69	0.0	0.05	20.08	0.00	2.029	5.53	0.26	5.2	94.0	0.8	-1.48	0.75	0.89	3.82	3.0	0.003	0.66	0.0	0.05	19.18	0.00	1.937	5.05	2.20	5.5	93.8	0.7	-0.26	1.08	0.72	0.88	3.64	14364	1836	12	0	24	0	0	logfile
✔	8DS9	27686	2024-02-15	2022-07-21	3.17	3.61	3.26	3.6	0.005	0.81	0.0	0.05	17.32	0.01	2.201	7.01	0.53	2.6	97.4	0.0	0.06	0.57	0.61	1.30	3.6	0.004	0.58	0.0	0.04	16.99	0.00	2.060	10.87	4.64	2.9	97.1	0.0	1.27	1.91	0.56	0.68	0.97	12039	1418	14	0	4	6	0	logfile
✔	7YK2	33884	2024-02-13	2022-07-21	2.8	2.60	2.36	2.8	0.005	0.82	0.0	0.05	11.38	0.00	2.424	12.82	0.00	11.5	88.5	0.0	-3.89	0.42	0.78	3.09	2.8	0.002	0.58	0.0	0.05	14.70	0.00	2.444	5.39	2.96	5.7	94.3	0.0	-2.63	0.46	0.42	0.79	3.19	2628	378	6	0	0	0	0	logfile
✔	7YJM	33874	2024-02-14	2022-07-20	3.2	3.29	3.09	3.2	0.007	1.08	0.0	0.06	19.61	0.00	1.946	17.47	17.31	9.4	89.4	1.2	-4.69	0.74	0.88	2.07	3.2	0.002	0.61	0.0	0.04	17.30	0.00	2.208	5.28	3.21	4.2	95.7	0.2	-0.92	0.42	0.73	0.89	2.48	8895	1120	7	0	2	0	0	logfile
✔	8AGX	15427	2024-02-28	2022-07-20	2.4	3.19	2.52	2.5	0.006	0.93	5.0	0.05	21.77	0.01	1.296	4.14	2.04	3.7	96.2	0.1	-0.44	0.92	0.89	3.34	2.6	0.004	0.63	1.0	0.04	21.68	0.00	1.910	8.64	2.02	4.4	95.6	0.0	0.51	0.46	0.94	0.93	3.42	149706	9204	68	3640	41	0	0	logfile
✔	8AGU	15424	2024-02-28	2022-07-20	2.7	3.26	2.76	2.7	0.006	0.90	6.0	0.05	21.59	0.01	1.041	6.23	1.81	3.6	96.3	0.1	0.14	0.92	0.88	3.27	2.7	0.005	0.69	5.0	0.04	21.61	0.01	1.922	10.25	2.38	4.3	95.7	0.0	0.57	0.48	0.93	0.91	3.23	149748	9427	68	3568	38	0	0	logfile
✔	8AGW	15426	2024-02-28	2022-07-20	2.6	3.24	2.70	2.7	0.006	0.90	7.0	0.06	21.72	0.01	1.371	4.13	0.98	3.8	96.1	0.1	-0.36	0.92	0.89	3.19	2.6	0.005	0.61	0.0	0.04	21.64	0.00	1.893	8.41	2.31	4.5	95.5	0.0	0.63	0.46	0.94	0.92	3.22	150269	9285	68	3642	38	0	0	logfile
✔	8DQZ	27666	2024-02-24	2022-07-20	2.92	3.56	3.08	3.3	0.008	0.60	0.0	0.04	16.92	0.00	1.869	5.54	0.30	2.1	97.9	0.0	1.51	0.84	0.85	2.75	3.4	0.003	0.54	0.0	0.04	17.13	0.00	1.810	5.86	0.87	3.1	96.9	0.0	1.35	1.15	0.80	0.86	2.69	42754	2599	15	41	8	0	21302	logfile
✔	8DR4	27670	2024-02-24	2022-07-20	2.45	3.17	2.59	3.0	0.008	0.56	0.0	0.04	18.58	0.00	1.929	2.78	0.91	1.9	98.1	0.0	1.85	0.84	0.85	3.40	3.0	0.003	0.52	0.0	0.04	18.24	0.00	1.905	3.65	1.39	2.2	97.8	0.0	1.70	0.66	0.76	0.86	3.51	43471	2600	17	63	8	0	21549	logfile
✔	8DRE	27676	2024-02-19	2022-07-20	3.18	2.53	3.25	2.0	0.006	0.80	0.0	0.05	19.10	0.01	2.216	8.37	0.25	3.5	96.5	0.0	-0.71	0.73	0.76	1.15	2.0	0.003	0.53	0.0	0.04	17.00	0.00	2.154	11.15	2.42	3.1	96.9	0.0	0.27	1.13	0.73	0.78	1.33	25940	3069	18	0	20	6	0	logfile

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