Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DLZ	27521	2024-02-18	2022-07-08	2.57	3.25	2.77	3.0	0.005	0.83	0.0	0.06	13.17	0.01	2.297	3.31	0.12	2.0	98.0	0.0	-0.13	0.79	0.83	2.96	3.0	0.003	0.58	0.0	0.04	14.07	0.00	2.153	6.99	1.00	2.0	98.0	0.0	0.73	1.16	0.78	0.83	2.98	22974	2842	25	0	57	0	0	logfile
✔	8ADE	15361	2024-02-13	2022-07-08	2.78	2.65	2.55	2.7	0.012	1.58	0.0	0.11	9.64	0.00	2.213	3.08	0.00	3.4	96.6	0.0	-4.12	0.74	0.76	3.27	3.0	0.006	0.74	0.0	0.05	15.32	0.00	2.179	15.52	3.48	3.4	96.6	0.0	-2.46	0.73	0.77	0.83	4.61	5026	644	7	0	0	0	0	logfile
✔	8DMA	27532	2024-02-13	2022-07-08	2.79	3.35	2.84	3.2	0.005	0.83	0.0	0.05	13.45	0.01	2.244	3.78	0.14	3.0	97.0	0.0	-1.53	0.76	0.84	3.83	3.2	0.003	0.59	0.0	0.04	15.51	0.00	2.128	7.33	1.87	2.5	97.5	0.0	1.26	2.28	0.75	0.84	3.15	6487	794	4	0	3	0	0	logfile
✔	8DLS	27514	2024-02-13	2022-07-08	2.66	3.23	2.64	3.1	0.006	0.92	0.0	0.06	12.29	0.01	2.288	4.45	0.00	4.8	95.2	0.0	-0.59	0.70	0.83	4.60	3.1	0.006	0.68	0.0	0.05	14.39	0.00	2.211	9.15	3.22	3.7	96.3	0.0	0.33	1.09	0.69	0.83	4.59	4017	495	5	0	7	0	0	logfile
✔	8DLL	27505	2024-02-19	2022-07-08	2.56	3.44	2.79	2.8	0.005	0.78	0.0	0.06	12.79	0.01	2.279	3.13	0.00	2.8	97.2	0.0	-0.16	0.83	0.82	2.65	2.9	0.003	0.54	0.0	0.04	13.79	0.00	2.172	7.84	1.03	2.2	97.8	0.0	0.29	0.48	0.83	0.83	2.31	25095	3102	24	0	60	0	0	logfile
✔	8DM1	27523	2024-02-18	2022-07-08	3.04	3.80	3.09	3.5	0.005	0.84	0.0	0.06	13.21	0.01	2.305	3.36	0.54	1.7	98.3	0.0	0.41	0.78	0.75	1.04	3.5	0.003	0.60	0.0	0.04	14.34	0.00	2.147	8.68	2.07	2.2	97.8	0.0	1.00	1.11	0.83	0.85	2.27	22276	2751	24	0	55	0	0	logfile
✔	8DM3	27525	2024-02-21	2022-07-08	2.37	2.98	2.50	2.6	0.005	0.84	0.0	0.05	12.92	0.01	2.245	4.10	0.24	2.4	97.6	0.0	-0.56	0.78	0.82	2.75	2.6	0.005	0.78	1.0	0.05	14.15	0.00	2.009	10.74	1.45	2.9	97.1	0.0	0.23	0.59	0.78	0.84	2.91	31185	3888	30	0	57	0	0	logfile
✔	8DLK	27504	2024-02-13	2022-07-08	3.04	3.80	3.14	3.5	0.005	0.86	0.0	0.06	13.42	0.01	2.319	2.66	0.29	1.9	98.1	0.0	0.00	0.82	0.85	2.78	3.5	0.003	0.60	0.0	0.04	14.88	0.00	2.242	9.14	0.71	2.9	97.1	0.0	1.88	1.16	0.82	0.86	2.61	6554	797	4	0	7	0	0	logfile
✔	8DLY	27520	2024-02-13	2022-07-08	3.0	3.63	2.92	3.6	0.005	0.94	0.0	0.06	12.41	0.01	2.317	1.86	0.37	3.5	96.5	0.0	-1.46	0.63	0.81	3.36	3.6	0.004	0.73	0.0	0.05	15.92	0.00	2.294	13.42	5.24	2.9	97.1	0.0	-1.02	1.23	0.62	0.81	3.71	2483	314	3	0	1	0	0	logfile
✔	8DM0	27522	2024-02-13	2022-07-08	3.21	3.62	3.12	3.5	0.006	1.01	0.0	0.06	12.72	0.01	2.288	0.83	0.00	3.5	96.5	0.0	-1.78	0.59	0.80	3.29	3.6	0.003	0.60	0.0	0.04	14.73	0.00	2.238	7.85	3.75	2.9	97.1	0.0	-0.80	0.48	0.60	0.82	2.75	2480	314	3	0	1	0	0	logfile
✔	8DLN	27507	2024-02-13	2022-07-08	3.04	3.75	3.10	3.4	0.005	0.86	0.0	0.06	13.35	0.01	2.303	2.81	0.29	1.8	98.2	0.0	-0.21	0.83	0.85	3.19	3.5	0.004	0.58	0.0	0.04	14.77	0.00	2.197	9.85	1.29	2.6	97.4	0.0	1.84	2.32	0.84	0.87	2.80	6553	797	4	0	7	0	0	logfile
✔	8DLT	27515	2024-02-19	2022-07-08	2.4	3.35	2.60	2.8	0.005	0.76	0.0	0.05	12.93	0.01	2.220	2.75	0.00	1.7	98.3	0.0	0.21	0.85	0.84	3.11	2.8	0.005	0.58	0.0	0.05	13.52	0.00	2.123	7.75	0.73	2.6	97.4	0.0	0.50	1.13	0.86	0.87	2.92	25245	3120	24	0	60	0	0	logfile
✔	8DLJ	27503	2024-02-20	2022-07-08	2.91	3.82	3.10	3.1	0.005	0.84	0.0	0.06	12.96	0.01	2.282	3.47	0.13	1.7	98.3	0.0	0.38	0.84	0.82	2.35	3.1	0.005	0.63	0.0	0.04	14.07	0.00	2.061	10.63	0.52	2.5	97.5	0.0	0.75	1.56	0.85	0.85	2.56	28498	3508	26	0	64	0	0	logfile
✔	8DM2	27524	2024-02-13	2022-07-08	2.91	3.71	2.85	3.6	0.007	1.02	0.0	0.07	13.37	0.01	2.362	4.12	0.44	2.5	97.5	0.0	-0.51	0.57	0.66	2.14	3.6	0.003	0.69	0.0	0.05	15.77	0.00	2.285	7.99	4.44	5.9	94.1	0.0	-0.77	1.72	0.62	0.75	3.29	2104	249	3	0	6	0	0	logfile
✔	8DLR	27512	2024-02-13	2022-07-08	2.51	3.02	2.49	2.9	0.006	0.81	0.0	0.06	12.71	0.01	2.291	3.79	0.00	2.6	97.4	0.0	-0.80	0.72	0.84	5.48	2.9	0.004	0.61	0.0	0.04	14.26	0.00	2.192	7.33	1.61	3.6	96.4	0.0	-0.14	1.05	0.72	0.85	5.14	4027	505	4	0	6	0	0	logfile
✔	8DM4	27526	2024-02-13	2022-07-08	2.45	2.88	2.45	2.8	0.006	0.90	0.0	0.06	13.36	0.01	2.259	4.06	0.23	4.1	95.9	0.0	-0.05	0.69	0.81	4.67	2.9	0.005	0.65	0.0	0.05	15.47	0.00	2.143	9.27	2.06	3.9	96.1	0.0	0.21	1.16	0.68	0.83	5.50	4018	497	5	0	6	0	0	logfile
✔	8DLV	27517	2024-02-13	2022-07-08	3.11	3.78	3.18	3.5	0.006	0.88	0.0	0.06	13.40	0.01	2.311	2.66	0.29	1.5	98.5	0.0	-0.25	0.82	0.85	2.77	3.5	0.003	0.57	0.0	0.04	14.95	0.00	2.220	8.21	1.29	2.8	97.2	0.0	1.73	0.62	0.83	0.87	2.35	6553	797	4	0	7	0	0	logfile
✔	8ADN	15365	2024-02-25	2022-07-08	2.77	3.03	2.95	3.0	0.003	0.54	0.0	0.04	15.31	0.00	1.810	4.93	0.85	2.3	97.7	0.0	0.68	0.72	0.82	3.23	3.1	0.004	0.62	0.0	0.04	16.65	0.00	2.020	8.53	2.43	2.9	97.1	0.0	1.10	0.39	0.71	0.82	2.64	48318	6160	30	0	0	0	0	logfile
✔	8DMX	27548	2024-02-15	2022-07-08	3.37	3.66	3.43	3.6	0.003	0.59	0.0	0.04	13.99	0.00	2.105	6.01	0.00	2.3	97.7	0.0	0.17	0.55	0.79	2.06	3.6	0.002	0.54	0.0	0.04	15.94	0.00	2.005	3.73	1.83	2.5	97.5	0.0	-0.42	0.49	0.70	0.91	2.41	11748	1488	8	0	8	0	0	logfile
✔	8DLW	27518	2024-02-21	2022-07-08	2.16	3.12	2.26	2.6	0.007	1.05	0.0	0.06	11.95	0.01	2.290	1.95	0.19	2.3	97.7	0.1	0.82	0.87	0.86	4.36	2.6	0.004	0.65	0.0	0.04	13.03	0.00	2.152	6.72	1.16	2.5	97.5	0.0	0.91	2.12	0.88	0.89	4.11	30267	3768	33	0	78	0	0	logfile

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