Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ACC	15346	2024-02-13	2022-07-05	2.9	3.30	2.80	3.3	0.002	0.70	0.0	0.05	13.62	0.00	2.200	6.25	0.00	11.4	86.5	2.2	-2.46	0.20	0.81	4.38	3.3	0.003	0.62	0.0	0.04	17.49	0.00	2.230	5.95	3.29	10.9	88.2	0.9	-1.53	0.63	0.20	0.83	3.08	1779	231	2	5	0	0	0	logfile
✔	8DKi	27489	2024-02-13	2022-07-05	3.32	3.57	3.29	3.6	0.003	0.64	0.0	0.05	13.79	0.00	2.204	9.78	0.21	4.6	95.4	0.0	-0.62	0.62	0.84	2.61	3.5	0.004	0.63	0.0	0.04	15.95	0.00	2.200	11.28	2.28	7.1	92.9	0.0	-0.18	0.32	0.60	0.86	2.56	4365	552	3	0	0	0	0	logfile
✔	7YE6	33765	2024-02-16	2022-07-05	3.4	3.40	3.44	3.3	0.003	0.68	0.0	0.05	13.34	0.00	2.254	5.29	0.28	8.2	91.8	0.0	-4.95	0.61	0.58	1.56	3.3	0.004	0.76	0.0	0.05	15.71	0.00	2.090	15.62	4.07	9.7	90.3	0.0	-3.07	1.28	0.67	0.70	1.33	13804	1781	6	0	0	0	0	logfile
✔	8DKE	27488	2024-02-13	2022-07-05	3.18	3.43	3.12	3.4	0.003	0.74	2.0	0.05	14.40	0.01	2.179	7.36	0.83	6.2	93.8	0.0	-0.95	0.57	0.85	3.68	3.4	0.003	0.55	0.0	0.04	15.63	0.00	2.246	5.75	2.07	6.0	94.0	0.0	0.21	0.26	0.57	0.86	3.45	4369	553	3	0	0	0	0	logfile
✔	8AC5	15334	2024-02-22	2022-07-05	3.1	3.33	2.96	3.1	0.011	1.77	44.0	0.12	18.46	0.01	2.066	3.04	3.61	2.6	97.4	0.0	-1.30	0.82	0.94	4.26	3.0	0.002	0.53	0.0	0.04	16.57	0.00	2.150	5.47	0.75	1.5	98.5	0.0	2.19	1.01	0.80	0.92	3.12	32527	3997	33	0	31	0	0	logfile
✔	8AC3	15332	2024-02-22	2022-07-05	2.8	3.31	2.73	3.0	0.011	1.74	44.0	0.12	18.28	0.01	2.054	3.26	3.85	2.6	97.4	0.0	-1.48	0.84	0.94	4.59	2.9	0.004	0.61	0.0	0.04	16.74	0.00	2.162	5.65	0.84	1.5	98.5	0.0	1.97	1.30	0.82	0.93	3.33	32540	3999	34	0	31	0	0	logfile
✔	8ACB	15345	2024-02-13	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	15.24	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.003	0.59	0.0	0.04	17.97	0.00	2.229	6.61	1.14	8.7	91.3	0.0	-0.45	1.20	0.20	0.84	3.77	1815	220	2	5	0	0	0	logfile
✔	7YE1	33761	2024-02-21	2022-07-05	3.7	3.92	3.55	3.8	0.006	0.53	0.0	0.04	14.86	0.00	2.071	26.07	0.00	4.1	95.9	0.0	-3.09	0.83	0.81	1.25	3.8	0.004	0.57	0.0	0.04	17.47	0.00	1.958	43.29	1.84	10.0	90.0	0.0	-0.77	1.24	0.85	0.85	1.51	29964	3657	11	114	4	0	12	logfile
✔	8ABY	15327	2024-02-19	2022-07-05	3.7	4.01	3.81	4.0	0.004	0.62	0.0	0.04	15.03	0.00	2.131	10.11	0.00	4.0	96.0	0.0	-0.33	0.80	0.82	1.54	4.0	0.005	0.65	0.0	0.04	16.60	0.00	2.120	10.89	2.00	4.4	95.6	0.0	0.11	0.45	0.81	0.85	1.33	25719	3166	9	46	3	0	0	logfile
✔	7YE4	33763	2024-02-16	2022-07-05	3.4	3.54	3.36	3.5	0.003	0.68	0.0	0.05	13.68	0.00	2.352	4.16	0.07	6.4	93.6	0.0	-5.13	0.65	0.71	1.84	3.5	0.006	0.98	0.0	0.05	16.38	0.00	2.027	14.37	4.25	11.9	88.1	0.0	-3.19	0.69	0.68	0.79	1.92	13877	1791	6	0	0	0	0	logfile
✔	8AC1	15330	2024-02-19	2022-07-05	4.06	4.42	4.15	4.0	0.005	0.65	0.0	0.04	15.16	0.00	1.927	19.97	0.00	8.5	91.5	0.0	-1.14	0.83	0.81	—	4.0	0.003	0.62	0.0	0.04	15.08	0.00	1.988	15.38	0.00	7.2	92.7	0.0	-0.91	0.34	0.83	0.80	—	25188	3141	9	32	3	0	0	logfile
✔	8DKC	27487	2024-02-19	2022-07-05	3.5	4.43	3.56	4.1	0.007	1.01	0.0	0.06	14.11	0.01	1.892	31.47	0.04	12.2	87.6	0.2	-2.77	0.82	0.72	0.90	4.1	0.004	0.84	0.0	0.05	16.63	0.00	2.091	21.97	2.82	11.4	88.5	0.0	-1.95	1.05	0.82	0.72	0.76	23282	2950	5	0	0	0	0	logfile
✔	7YEH	33773	2024-02-17	2022-07-05	3.92	4.33	3.78	3.9	0.006	1.00	0.0	0.05	16.73	0.01	2.011	28.89	5.09	7.7	92.3	0.0	-1.15	0.87	0.79	0.84	3.9	0.004	0.73	0.0	0.04	16.17	0.00	2.040	22.93	2.30	6.4	93.6	0.0	-0.09	1.04	0.88	0.82	0.80	19122	2419	5	1	1	0	0	logfile
✔	8DKM	27490	2024-02-13	2022-07-05	3.39	3.59	3.11	3.6	0.003	0.64	0.0	0.05	12.93	0.00	2.241	7.23	0.83	6.4	93.6	0.0	-0.94	0.62	0.84	2.67	3.6	0.003	0.56	0.0	0.04	15.17	0.00	2.173	5.62	3.73	6.2	93.8	0.0	-0.16	0.27	0.61	0.85	2.33	4383	553	3	0	1	0	0	logfile
✔	8ABK	15324	2024-02-22	2022-07-04	2.5	2.72	2.19	2.6	0.010	1.70	31.0	0.11	18.17	0.01	2.069	3.67	3.10	2.5	97.5	0.0	-1.30	0.82	0.94	5.41	2.6	0.003	0.56	0.0	0.04	17.22	0.00	2.156	4.95	0.93	1.2	98.8	0.0	2.04	1.31	0.79	0.93	4.25	32573	3997	34	0	33	0	0	logfile
✔	7YDH	33747	2024-02-14	2022-07-04	3.1	2.35	3.15	2.2	0.006	0.80	0.0	0.05	12.11	0.00	2.153	6.24	0.73	4.3	95.7	0.0	0.01	0.74	0.73	3.58	2.2	0.002	0.58	0.0	0.04	14.25	0.00	2.216	6.36	2.72	3.0	96.9	0.1	1.03	0.42	0.73	0.74	2.31	8764	1116	5	0	0	0	0	logfile
✔	7YDP	33755	2024-02-13	2022-07-04	3.1	2.36	3.18	2.1	0.005	0.73	0.0	0.05	12.57	0.00	2.123	11.85	0.00	5.2	94.8	0.0	-1.21	0.68	0.65	1.63	2.0	0.003	0.66	0.0	0.04	14.75	0.00	2.148	10.85	2.55	4.7	95.3	0.0	-0.10	0.37	0.69	0.66	1.16	8028	1022	5	0	0	0	0	logfile
✔	8AB9	15315	2024-02-22	2022-07-04	3.3	3.62	3.23	3.4	0.011	1.79	51.0	0.11	18.51	0.01	2.046	4.23	3.82	2.5	97.4	0.1	-1.63	0.82	0.94	4.12	3.4	0.003	0.55	0.0	0.04	16.77	0.00	2.126	6.38	0.93	1.6	98.4	0.0	2.03	1.31	0.82	0.92	3.35	32540	3999	32	0	31	0	0	logfile
✔	8ABG	15320	2024-02-22	2022-07-04	2.3	2.71	2.21	2.5	0.010	1.69	45.0	0.11	18.08	0.01	2.059	3.18	3.25	2.5	97.5	0.0	-1.11	0.84	0.95	5.66	2.5	0.003	0.64	0.0	0.04	16.89	0.00	2.100	4.65	0.72	1.3	98.7	0.0	2.14	1.55	0.82	0.94	4.50	32540	3999	34	0	31	0	0	logfile
✔	8ABJ	15323	2024-02-22	2022-07-04	3.7	3.62	3.32	3.1	0.012	1.93	76.0	0.13	18.57	0.01	1.563	3.98	4.36	2.8	97.2	0.1	-1.58	0.80	0.91	3.30	3.1	0.002	0.55	0.0	0.04	16.88	0.00	2.151	7.31	0.90	1.5	98.5	0.0	1.97	1.80	0.79	0.87	2.44	32548	3999	32	0	31	0	0	logfile

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