Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TUP	41628	2024-02-15	2023-08-16	3.3	3.44	3.30	3.4	0.002	0.41	0.0	0.04	14.81	0.00	2.277	4.52	0.00	2.2	97.8	0.0	2.02	0.65	0.78	2.89	3.4	0.005	0.57	0.0	0.04	15.39	0.00	2.208	6.16	2.78	1.6	98.4	0.0	2.36	0.89	0.58	0.80	2.76	12869	1590	12	0	3	66	0	logfile
✔	8KFX	37207	2024-02-14	2023-08-16	2.96	2.23	3.09	2.0	0.004	0.67	0.0	0.04	16.75	0.00	2.189	11.28	0.51	2.5	97.5	0.0	0.90	0.79	0.79	2.90	2.0	0.004	0.57	0.0	0.04	17.27	0.00	2.119	8.94	3.14	2.6	97.4	0.0	1.02	1.08	0.79	0.80	2.95	9001	1139	6	0	1	0	0	logfile
✔	8KFY	37208	2024-02-14	2023-08-16	3.06	2.26	3.16	2.0	0.003	0.64	0.0	0.04	15.91	0.00	2.155	8.49	0.20	1.7	98.3	0.0	1.35	0.78	0.78	2.86	1.9	0.003	0.51	0.0	0.04	16.29	0.00	2.146	8.66	3.44	2.6	97.4	0.0	1.32	0.30	0.78	0.79	2.86	8992	1139	6	0	1	0	0	logfile
✔	8TU6	41617	2024-02-18	2023-08-15	3.12	3.16	3.01	3.2	0.004	0.59	0.0	0.04	16.95	0.00	2.021	5.71	0.88	3.0	97.0	0.0	0.51	0.66	0.78	3.49	3.3	0.004	0.52	0.0	0.04	16.88	0.00	2.087	5.80	2.20	3.0	97.0	0.0	1.21	0.47	0.74	0.83	3.25	20338	1233	2	0	0	0	10170	logfile
✔	8KFA	37203	2024-02-17	2023-08-15	3.04	3.87	3.20	3.4	0.002	0.48	0.0	0.04	13.59	0.00	2.226	9.28	0.00	2.9	97.1	0.0	-0.20	0.83	0.82	2.55	3.4	0.004	0.58	0.0	0.04	15.03	0.00	2.082	12.75	2.48	3.7	96.3	0.0	-0.38	0.34	0.84	0.85	2.54	18665	2421	9	0	0	0	0	logfile
✔	8TU9	41620	2024-02-14	2023-08-15	3.26	3.58	3.38	3.6	0.011	1.68	0.0	0.08	14.55	0.02	2.275	2.59	0.00	4.4	95.6	0.0	-0.68	0.66	0.81	2.08	3.6	0.003	0.60	0.0	0.04	15.37	0.00	2.239	4.21	1.89	4.3	95.7	0.0	0.60	0.47	0.63	0.84	2.68	8390	1066	4	0	8	0	0	logfile
✔	8TTW	41613	2024-02-21	2023-08-15	2.96	3.21	3.03	3.3	0.005	1.03	1.0	0.05	19.41	0.00	1.953	31.63	10.42	7.5	91.8	0.7	-2.50	0.69	0.82	2.69	3.3	0.005	0.84	1.0	0.05	17.32	0.01	1.865	10.74	8.51	6.9	92.7	0.4	-1.79	0.35	0.69	0.86	2.60	31275	3744	69	0	162	0	0	logfile
✔	8Q72	18201	2024-02-20	2023-08-15	4.17	4.49	4.20	4.2	0.004	0.65	0.0	0.04	18.07	0.00	1.906	6.35	0.00	3.5	96.4	0.0	-0.10	0.82	0.74	—	4.2	0.004	0.58	0.0	0.04	17.54	0.00	1.847	10.36	0.00	6.8	93.2	0.0	-0.44	0.39	0.83	0.78	—	84342	4946	20	160	4	0	41352	logfile
✔	8Q6P	18192	2024-02-16	2023-08-14	3.53	3.92	3.77	3.9	0.002	0.48	0.0	0.04	14.14	0.00	2.234	5.07	0.11	2.4	97.6	0.0	1.50	0.55	0.78	1.46	3.9	0.003	0.63	0.0	0.04	16.46	0.00	2.206	9.43	2.91	3.0	97.0	0.0	1.00	1.00	0.56	0.81	1.41	16794	2104	12	0	5	0	0	logfile
✔	8Q6o	18191	2024-02-25	2023-08-14	3.14	3.54	3.31	3.5	0.003	0.49	0.0	0.04	13.86	0.00	2.232	4.96	0.03	2.4	97.6	0.0	0.77	0.66	0.81	2.60	3.5	0.003	0.58	0.0	0.04	15.97	0.00	2.121	6.63	1.31	3.1	96.9	0.0	1.07	0.78	0.70	0.85	2.44	51983	6454	34	0	10	0	0	logfile
✔	8TTB	41604	2024-02-18	2023-08-13	2.77	3.26	2.76	3.0	0.002	0.42	0.0	0.04	7.77	0.00	1.428	3.70	0.00	1.6	98.4	0.0	1.83	0.83	0.87	5.03	3.0	0.003	0.50	0.0	0.04	11.55	0.00	1.975	4.88	0.41	2.1	97.9	0.0	1.20	1.02	0.84	0.88	4.52	21905	1376	5	0	2	0	10903	logfile
✔	8Q6J	18188	2024-02-15	2023-08-11	3.3	4.21	3.41	3.8	0.007	0.76	0.0	0.05	15.11	0.01	2.029	19.52	5.69	9.6	90.4	0.1	-1.61	0.86	0.75	1.78	3.8	0.008	0.83	0.0	0.05	14.44	0.01	2.076	22.83	4.21	10.1	89.8	0.1	-1.69	1.29	0.87	0.80	1.67	11535	1494	8	0	9	0	0	logfile
✔	8Q63	18183	2024-02-15	2023-08-10	3.68	3.75	3.69	3.8	0.007	1.03	0.0	0.09	18.50	0.00	2.121	12.49	0.09	4.5	95.5	0.0	0.60	0.74	0.73	1.25	3.8	0.003	0.63	0.0	0.04	19.27	0.00	2.147	13.90	2.44	3.8	96.2	0.0	0.66	0.45	0.74	0.74	1.36	11346	1244	6	69	1	0	0	logfile
✔	8KD2	37122	2024-02-19	2023-08-09	3.02	3.13	2.97	3.0	0.004	0.70	0.0	0.04	25.70	0.01	1.457	8.15	0.68	4.3	95.7	0.0	-0.56	0.78	0.74	1.28	3.0	0.006	0.79	1.0	0.04	25.48	0.00	1.993	16.39	4.23	5.2	94.8	0.0	0.03	1.23	0.83	0.84	1.90	24694	2164	16	348	0	0	0	logfile
✔	8TRG	41579	2024-02-24	2023-08-09	2.93	2.40	3.11	2.2	0.009	0.85	0.0	0.05	17.98	0.01	1.926	6.54	0.78	3.8	96.2	0.0	-0.52	0.67	0.79	3.17	2.2	0.004	0.61	0.0	0.04	18.25	0.00	1.710	5.60	2.26	4.1	95.9	0.0	0.20	0.43	0.67	0.80	3.03	45801	2914	19	27	16	0	22935	logfile
✔	8KD6	37126	2024-02-20	2023-08-09	3.07	3.13	3.02	2.8	0.004	0.87	2.0	0.05	24.63	0.01	1.891	8.05	0.77	4.5	95.5	0.0	-1.98	0.76	0.71	1.01	3.0	0.004	0.61	0.0	0.04	24.74	0.00	1.750	13.92	3.31	4.8	95.2	0.0	-0.18	1.00	0.83	0.85	1.77	26982	2489	17	328	1	0	0	logfile
✔	8KD3	37123	2024-02-20	2023-08-09	2.9	2.96	2.85	3.0	0.004	0.77	1.0	0.04	24.41	0.01	1.281	7.68	0.13	5.1	94.9	0.0	-1.28	0.74	0.66	1.31	3.0	0.004	0.64	0.0	0.04	24.78	0.00	1.949	13.56	3.03	4.5	95.4	0.0	-0.36	0.75	0.84	0.87	2.70	27576	2563	17	328	1	0	0	logfile
✔	8KD4	37124	2024-02-20	2023-08-09	2.93	3.01	2.89	2.9	0.004	0.81	0.0	0.04	24.50	0.01	2.023	8.53	0.59	5.0	95.0	0.0	-1.48	0.77	0.74	1.45	2.9	0.006	0.72	0.0	0.04	24.88	0.00	1.926	13.95	3.88	5.3	94.7	0.0	-0.31	1.25	0.84	0.88	2.49	27064	2498	17	328	1	0	0	logfile
✔	8KD5	37125	2024-02-20	2023-08-09	2.9	3.00	3.01	3.0	0.003	0.75	0.0	0.04	24.46	0.01	2.044	8.17	0.54	4.3	95.6	0.1	-1.18	0.76	0.74	1.52	2.9	0.004	0.63	0.0	0.04	24.72	0.00	2.014	13.75	2.79	4.4	95.6	0.0	0.03	0.71	0.83	0.87	2.66	26908	2502	17	319	1	0	0	logfile
✔	8TQZ	41566	2024-02-18	2023-08-08	2.9	3.47	2.97	3.4	0.002	0.50	0.0	0.04	17.76	0.00	2.049	6.09	4.50	3.5	96.5	0.0	1.08	0.73	0.81	2.05	3.4	0.003	0.59	0.0	0.04	17.66	0.00	2.210	7.72	4.71	5.1	94.9	0.0	0.59	0.36	0.76	0.85	2.72	22334	2863	10	0	0	0	0	logfile

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