Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XoC	33344	2024-02-13	2022-05-01	3.0	2.28	3.19	2.1	0.002	0.49	0.0	0.04	10.96	0.00	2.149	5.34	0.00	2.1	97.9	0.0	-2.11	0.73	0.69	2.72	2.0	0.003	0.66	0.0	0.04	15.64	0.00	2.076	8.36	2.20	3.1	96.9	0.0	0.97	1.37	0.76	0.82	3.23	6432	786	5	0	5	0	0	logfile
✔	7XoK	33350	2024-02-13	2022-05-01	2.7	3.82	2.75	3.2	0.003	0.50	0.0	0.04	13.15	0.00	2.160	10.61	0.00	1.1	98.9	0.0	2.23	0.87	0.86	1.97	3.2	0.003	0.59	0.0	0.04	14.80	0.00	2.125	11.97	0.65	0.9	99.1	0.0	2.12	0.29	0.87	0.86	1.77	53970	7336	14	0	0	0	0	logfile
✔	7XoU	33359	2024-02-14	2022-05-01	3.2	3.39	3.29	3.4	0.004	0.71	0.0	0.04	13.47	0.00	2.205	11.37	0.11	5.1	94.9	0.0	-3.52	0.56	0.66	1.65	3.5	0.004	0.68	0.0	0.04	16.20	0.00	2.138	14.16	2.34	5.5	94.4	0.1	-0.98	0.59	0.55	0.68	1.38	8247	1043	6	0	1	0	0	logfile
✔	7Xo6	33338	2024-02-13	2022-05-01	2.6	2.25	3.18	2.1	0.003	0.56	0.0	0.08	13.23	0.01	2.075	2.62	0.00	1.3	98.7	0.0	-1.43	0.72	0.68	2.45	2.1	0.003	0.59	0.0	0.04	17.05	0.00	2.100	8.66	1.46	2.2	97.8	0.0	0.69	1.56	0.78	0.82	3.13	6440	786	5	0	5	0	0	logfile
✔	7Xoo	33354	2024-02-13	2022-05-01	3.0	3.53	2.84	3.3	0.003	0.46	0.0	0.04	11.95	0.00	2.333	7.79	0.00	1.1	98.9	0.0	2.57	0.58	0.89	1.90	3.3	0.003	0.52	0.0	0.04	13.74	0.00	2.327	6.77	0.74	1.3	98.7	0.0	2.75	0.43	0.58	0.90	2.19	3855	524	1	0	0	0	0	logfile
✔	7XoP	33355	2024-02-13	2022-05-01	3.2	3.56	3.01	3.4	0.003	0.49	0.0	0.04	11.43	0.00	2.190	8.30	0.00	1.1	98.9	0.0	2.31	0.56	0.86	3.54	3.4	0.005	0.63	0.0	0.04	13.18	0.00	2.180	10.73	0.25	1.1	98.9	0.0	1.87	0.40	0.59	0.89	2.88	3855	524	1	0	0	0	0	logfile
✔	7XoR	33357	2024-02-13	2022-05-01	3.3	3.57	3.01	3.4	0.003	0.52	0.0	0.04	12.60	0.00	2.273	9.71	0.00	1.3	98.7	0.0	2.15	0.56	0.86	2.32	3.4	0.003	0.52	0.0	0.04	14.40	0.00	2.258	10.85	1.49	1.1	98.9	0.0	2.14	0.37	0.59	0.88	2.14	3855	524	1	0	0	0	0	logfile
✔	7Xo3	33335	2024-02-13	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.6	0.004	0.57	0.0	0.05	16.17	0.00	2.274	2.63	3.03	11.7	88.3	0.0	-1.86	0.39	0.50	0.85	5.90	2598	378	6	0	0	0	0	logfile
✔	7Xo2	33334	2024-02-13	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.009	0.69	0.0	0.06	19.10	0.00	2.285	4.76	4.65	9.4	90.6	0.0	-1.72	1.12	0.51	0.89	6.72	2550	372	6	0	0	0	0	logfile
✔	7Xo4	33336	2024-02-22	2022-04-30	3.24	2.35	3.35	2.1	0.002	0.50	0.0	0.04	11.87	0.00	1.184	7.12	0.00	2.0	98.0	0.0	-2.83	0.52	0.40	1.77	2.1	0.004	0.82	2.0	0.05	14.11	0.00	2.098	9.75	2.87	4.1	95.9	0.0	-0.64	1.06	0.70	0.77	2.06	33410	4252	10	0	41	0	0	logfile
✔	7Xo0	33332	2024-02-13	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.005	0.49	0.0	0.05	17.10	0.00	2.237	6.29	2.71	9.2	90.8	0.0	-2.93	0.30	0.47	0.88	6.95	2550	372	6	0	0	0	0	logfile
✔	7XNZ	33331	2024-02-15	2022-04-30	3.6	3.72	3.56	3.7	0.004	0.60	0.0	0.04	13.12	0.00	2.146	35.80	3.42	12.0	87.7	0.3	-3.94	0.74	0.83	2.51	3.7	0.003	0.65	0.0	0.04	15.32	0.00	2.119	10.18	4.13	3.6	96.4	0.1	-0.39	0.69	0.75	0.84	1.91	13524	1832	8	0	4	0	0	logfile
✔	7Xo1	33333	2024-02-13	2022-04-30	3.0	2.71	1.85	3.1	0.002	0.53	0.0	0.05	16.42	0.00	2.269	6.86	0.00	5.0	95.0	0.0	-2.46	0.45	0.86	4.75	3.1	0.007	0.66	0.0	0.05	18.46	0.00	2.280	3.05	1.55	8.3	91.7	0.0	-2.15	0.32	0.44	0.87	5.88	2550	372	6	0	0	0	0	logfile
✔	7XNK	33317	2024-02-21	2022-04-29	2.6	3.10	2.61	3.2	0.020	1.10	0.0	0.09	12.81	0.01	2.092	1.62	0.73	3.1	96.9	0.0	-1.76	0.61	0.79	3.72	3.1	0.003	0.66	1.0	0.09	16.92	0.00	2.057	5.97	1.33	1.1	98.9	0.0	2.53	1.06	0.58	0.79	2.97	31500	1968	12	0	8	0	15652	logfile
✔	7UV0	26808	2024-02-13	2022-04-29	3.1	3.20	3.07	3.2	0.005	0.61	0.0	0.04	13.42	0.00	2.160	5.85	0.51	7.7	92.3	0.0	0.23	0.59	0.79	2.75	3.3	0.003	0.58	0.0	0.04	15.02	0.00	2.290	7.41	2.28	5.5	94.5	0.0	1.71	1.12	0.54	0.76	1.89	3784	501	1	0	4	0	0	logfile
✔	7UUY	26806	2024-02-13	2022-04-29	3.3	3.47	3.28	3.5	0.004	0.58	0.0	0.04	13.50	0.00	2.067	5.68	0.25	5.5	94.5	0.0	0.72	0.61	0.84	2.03	3.5	0.004	0.61	0.0	0.04	14.94	0.00	2.175	7.23	2.27	4.6	95.4	0.0	1.30	1.54	0.59	0.83	1.61	3809	503	1	0	1	0	0	logfile
✔	7XNL	33318	2024-02-21	2022-04-29	3.1	3.41	3.13	3.4	0.014	0.99	0.0	0.06	14.78	0.00	2.084	3.23	0.00	3.9	96.1	0.0	-2.27	0.62	0.78	2.85	3.4	0.004	0.56	0.0	0.04	17.09	0.00	2.085	10.61	2.00	1.5	98.5	0.0	1.36	1.54	0.61	0.80	2.94	31688	1968	16	0	12	0	15652	logfile
✔	7UV9	26809	2024-02-16	2022-04-29	3.2	2.64	3.07	3.0	0.009	0.89	0.0	0.06	26.05	0.01	1.561	5.75	0.30	1.4	98.6	0.0	1.22	0.77	0.75	1.70	3.0	0.003	0.59	0.0	0.04	26.83	0.00	2.036	8.12	1.20	1.9	98.1	0.0	0.87	1.07	0.78	0.76	1.58	15342	1164	11	292	2	0	0	logfile
✔	7UUW	26805	2024-02-19	2022-04-29	3.36	3.61	3.51	3.6	0.007	0.75	0.0	0.05	17.00	0.00	2.202	7.09	1.34	3.1	96.9	0.0	-0.17	0.67	0.86	3.53	3.6	0.006	0.60	0.0	0.04	16.64	0.00	2.133	5.84	0.82	2.9	97.1	0.0	0.66	0.32	0.66	0.87	3.13	24852	3174	18	0	12	0	0	logfile
✔	7XNS	33325	2024-02-20	2022-04-29	3.48	3.93	3.54	3.8	0.004	0.65	0.0	0.05	15.42	0.00	2.252	6.45	0.00	4.8	95.2	0.0	-0.65	0.79	0.78	2.56	3.8	0.002	0.58	0.0	0.04	14.80	0.00	2.158	5.38	2.17	4.1	95.9	0.0	-0.47	0.54	0.82	0.83	2.16	26595	3285	24	0	66	0	0	logfile

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