Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PQ2	17819	2024-02-13	2023-07-10	3.85	4.01	3.65	3.9	0.002	0.51	0.0	0.04	10.37	0.00	2.133	5.53	2.73	8.3	91.7	0.0	-2.04	0.60	0.79	3.14	3.9	0.003	0.56	0.0	0.04	13.07	0.00	2.022	8.38	3.33	11.2	88.8	0.0	-2.27	0.56	0.60	0.80	3.19	5956	390	4	0	1	0	2891	logfile
✔	8PPT	17815	2024-02-17	2023-07-10	2.9	3.15	3.01	3.2	0.003	0.55	0.0	0.04	19.22	0.00	1.950	6.05	2.82	3.8	96.2	0.0	-0.19	0.71	0.84	2.71	3.2	0.003	0.56	0.0	0.04	19.50	0.00	1.949	6.10	2.62	3.8	96.2	0.0	0.29	0.33	0.71	0.85	2.61	19620	2376	9	34	6	0	0	logfile
✔	8TFB	41228	2024-02-20	2023-07-09	2.99	3.29	3.14	3.3	0.003	0.47	2.0	0.04	13.18	0.00	2.087	4.51	0.00	1.6	98.4	0.0	1.54	0.56	0.66	3.91	3.3	0.002	0.47	0.0	0.04	15.72	0.00	2.078	4.45	1.36	1.5	98.5	0.0	1.38	0.49	0.78	0.87	3.56	42056	5316	24	0	12	0	0	logfile
✔	8K0B	36759	2024-02-13	2023-07-08	3.56	2.51	3.58	1.9	0.004	0.86	2.0	0.05	17.34	0.00	2.195	14.96	1.28	8.0	92.0	0.0	-0.63	0.53	0.53	0.79	2.0	0.004	0.78	0.0	0.04	17.55	0.00	2.156	15.66	6.39	8.3	91.7	0.0	-0.41	0.44	0.54	0.54	0.38	5689	689	1	0	0	0	0	logfile
✔	8TF2	41217	2024-02-17	2023-07-07	2.57	2.79	2.66	2.8	0.012	1.75	3.0	0.09	15.41	0.01	2.484	4.43	0.38	1.5	98.5	0.0	0.29	0.57	0.85	5.52	2.9	0.002	0.49	0.0	0.04	16.22	0.00	2.228	5.45	1.97	1.0	99.0	0.0	2.00	1.72	0.65	0.89	4.52	19856	2408	8	0	24	0	0	logfile
✔	8PPo	17806	2024-02-13	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.53	0.0	0.06	14.00	0.00	2.289	0.29	0.52	0.0	100.0	0.0	1.18	0.37	0.50	0.88	5.44	1696	240	16	0	0	0	0	logfile
✔	8TF3	41218	2024-02-17	2023-07-07	2.94	3.18	2.97	3.3	0.012	1.80	4.0	0.09	14.59	0.02	2.356	4.45	0.00	2.7	97.3	0.0	-0.94	0.57	0.83	5.13	3.3	0.003	0.57	0.0	0.04	15.90	0.00	2.202	5.85	1.39	1.5	98.5	0.0	1.83	0.47	0.65	0.87	3.64	19888	2408	8	0	20	0	0	logfile
✔	8TF4	41219	2024-02-17	2023-07-07	2.86	3.17	2.99	3.2	0.012	1.77	0.0	0.09	15.62	0.01	2.302	5.28	0.58	2.0	98.0	0.0	-0.60	0.57	0.85	4.97	3.2	0.002	0.51	0.0	0.04	16.34	0.00	2.181	5.18	0.48	1.0	99.0	0.0	2.10	0.94	0.64	0.87	4.27	19888	2408	8	0	20	0	0	logfile
✔	8TEo	41193	2024-02-13	2023-07-06	2.39	2.54	2.25	2.6	0.009	0.97	0.0	0.04	16.68	0.01	2.259	8.59	0.60	2.7	97.3	0.0	2.20	0.63	0.85	4.76	2.5	0.004	0.53	0.0	0.04	14.22	0.00	2.165	4.41	1.66	1.1	98.9	0.0	3.21	0.34	0.65	0.89	4.89	6507	784	12	0	34	9	0	logfile
✔	8TER	41198	2024-02-13	2023-07-06	2.59	2.80	2.25	2.8	0.007	0.89	0.0	0.05	18.43	0.01	2.289	10.67	0.00	6.1	93.9	0.0	-4.34	0.66	0.90	5.78	2.8	0.009	0.75	0.0	0.05	20.13	0.00	2.173	3.05	6.21	5.8	94.2	0.0	-3.89	0.85	0.67	0.91	6.78	5780	700	40	0	0	240	0	logfile
✔	8JZU	36753	2024-02-13	2023-07-06	3.05	3.36	3.11	3.4	0.004	0.59	0.0	0.04	13.67	0.00	2.206	6.34	0.00	2.1	97.9	0.0	1.94	0.54	0.74	2.37	3.4	0.003	0.63	0.0	0.04	15.80	0.00	2.193	10.18	2.32	2.3	97.7	0.0	1.66	1.65	0.58	0.81	2.40	3741	488	3	0	1	0	0	logfile
✔	8TEQ	41195	2024-02-13	2023-07-06	2.84	3.16	2.42	3.1	0.003	0.56	0.0	0.04	17.77	0.01	2.300	6.75	0.00	2.0	98.0	0.0	-4.35	0.66	0.92	6.41	3.1	0.005	0.68	0.0	0.05	18.87	0.01	2.046	4.31	2.45	4.8	95.2	0.0	-3.06	0.47	0.65	0.93	6.27	6705	825	30	0	0	0	0	logfile
✔	8JZX	36754	2024-02-13	2023-07-06	2.5	2.84	2.49	2.9	0.008	1.15	0.0	0.06	10.91	0.01	2.300	8.04	0.28	6.1	93.7	0.2	-6.11	0.65	0.85	4.84	2.9	0.003	0.66	0.0	0.04	13.47	0.00	2.232	6.80	1.14	4.0	95.5	0.4	1.69	1.34	0.60	0.85	2.89	7108	910	4	0	8	0	0	logfile
✔	8JZZ	36755	2024-02-14	2023-07-06	3.31	3.67	3.40	3.7	0.002	0.54	0.0	0.04	13.17	0.00	2.205	9.02	0.24	4.4	95.6	0.0	-0.38	0.61	0.70	2.06	3.7	0.002	0.55	0.0	0.04	15.11	0.00	2.141	9.14	2.28	4.1	95.9	0.0	-0.16	0.97	0.59	0.70	2.07	8680	1198	6	0	0	0	0	logfile
✔	8TEK	41189	2024-02-16	2023-07-06	3.6	2.85	3.88	3.4	0.015	0.65	0.0	0.04	15.86	0.00	2.065	14.54	0.00	3.9	96.0	0.1	-1.18	0.16	0.51	0.46	2.7	0.015	0.79	0.0	0.04	19.31	0.00	2.078	20.47	3.65	4.4	95.5	0.1	-0.11	2.30	0.19	0.67	0.47	15250	1817	10	0	0	0	0	logfile
✔	8JZS	36752	2024-02-13	2023-07-06	2.95	3.15	2.92	3.2	0.008	0.93	0.0	0.06	13.27	0.01	2.299	10.90	0.00	4.4	95.2	0.4	0.71	0.69	0.82	1.94	3.2	0.003	0.59	0.0	0.04	14.61	0.00	2.206	5.71	2.13	4.6	95.4	0.0	1.31	0.53	0.64	0.83	2.32	7500	972	4	0	6	0	0	logfile
✔	8TDW	41175	2024-02-15	2023-07-05	3.04	3.24	3.20	3.2	0.005	0.56	0.0	0.05	14.08	0.00	2.217	6.55	0.00	5.6	94.4	0.0	-0.08	0.39	0.50	3.22	3.2	0.003	0.53	0.0	0.04	15.44	0.00	2.093	5.72	2.66	5.6	94.4	0.0	0.26	0.31	0.54	0.72	2.73	11359	1830	8	12	2	0	0	logfile
✔	8JZN	36748	2024-02-15	2023-07-05	2.47	2.92	2.74	2.9	0.019	1.12	0.0	0.08	21.23	0.00	1.784	9.87	1.91	4.2	95.8	0.0	-2.06	0.61	0.79	3.69	2.9	0.002	0.58	0.0	0.04	16.47	0.00	2.198	7.29	2.37	3.6	96.4	0.0	0.79	1.55	0.57	0.77	3.02	12831	1489	3	0	20	0	0	logfile
✔	8TDV	41174	2024-02-15	2023-07-05	3.44	3.66	3.43	3.6	0.002	0.53	0.0	0.04	14.04	0.00	2.000	6.00	0.53	7.4	92.6	0.0	-0.51	0.53	0.61	1.95	3.6	0.003	0.71	0.0	0.05	16.42	0.00	2.018	10.12	2.85	7.3	92.7	0.0	-1.03	1.36	0.53	0.67	1.23	10957	1740	8	13	2	0	0	logfile
✔	8TEA	41179	2024-02-13	2023-07-05	3.4	2.31	—	2.0	0.004	0.74	0.0	0.05	13.18	0.01	2.256	5.80	0.30	4.4	95.6	0.0	-0.71	0.72	0.68	2.75	2.1	0.003	0.60	0.0	0.04	14.98	0.00	2.173	12.19	1.81	4.0	96.0	0.0	-0.26	0.41	0.72	0.69	2.30	6054	780	7	0	0	0	0	logfile

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