Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W8S	32358	2024-02-13	2021-12-08	2.85	3.08	—	3.1	0.003	0.60	0.0	0.04	11.07	0.01	2.102	0.87	3.48	3.4	96.6	0.0	-4.03	0.67	0.82	4.11	3.1	0.003	0.62	0.0	0.04	14.81	0.00	2.242	2.46	2.03	2.7	97.3	0.0	-1.01	0.97	0.68	0.83	3.35	6455	788	4	0	3	0	0	logfile
✔	7T3o	25666	2024-02-13	2021-12-08	3.3	3.72	—	3.7	0.006	0.68	0.0	0.05	13.49	0.00	2.284	3.91	0.29	7.1	92.9	0.0	-3.36	0.49	0.86	1.84	3.7	0.003	0.64	0.0	0.04	16.10	0.00	2.296	4.66	3.52	4.9	95.1	0.0	0.11	0.51	0.49	0.85	1.58	3410	452	1	0	0	0	0	logfile
✔	7T3Q	25668	2024-02-16	2021-12-08	3.3	3.64	3.39	3.6	0.004	0.54	0.0	0.04	14.70	0.00	2.049	7.69	0.00	4.5	95.5	0.0	1.74	0.70	0.74	2.52	3.6	0.006	0.70	0.0	0.04	16.46	0.00	2.108	12.35	2.31	4.9	95.1	0.0	0.50	0.82	0.74	0.80	2.15	68124	8336	8	0	88	0	0	logfile
✔	7T3T	25670	2024-02-17	2021-12-08	3.8	4.12	3.99	4.0	0.003	0.53	0.0	0.04	14.36	0.00	2.071	8.23	0.05	4.3	95.7	0.0	1.40	0.73	0.78	1.63	4.0	0.006	0.80	0.0	0.04	16.76	0.00	2.001	17.09	3.09	5.6	94.4	0.0	0.32	0.94	0.75	0.84	1.31	68516	8408	8	0	92	0	0	logfile
✔	7T3J	25660	2024-02-20	2021-12-08	3.2	3.05	—	3.2	0.004	0.74	0.0	0.05	17.15	0.01	2.241	6.11	0.58	4.9	95.1	0.0	-1.91	0.87	0.81	1.94	3.2	0.002	0.54	0.0	0.04	17.31	0.00	2.171	11.50	2.11	5.2	94.8	0.0	0.19	0.31	0.88	0.83	1.87	27076	3349	12	61	0	0	0	logfile
✔	7T3K	25661	2024-02-25	2021-12-08	3.5	4.08	—	3.5	0.004	0.75	0.0	0.05	17.27	0.01	2.223	7.05	0.52	5.0	95.0	0.0	-1.93	0.80	0.64	0.97	3.6	0.004	0.70	0.0	0.04	17.69	0.00	2.090	19.11	2.27	5.7	94.3	0.0	-0.06	1.43	0.90	0.82	1.08	50620	6242	22	122	0	0	0	logfile
✔	7T3R	25669	2024-02-17	2021-12-08	3.4	3.68	3.48	3.6	0.004	0.54	0.0	0.04	14.60	0.00	2.035	8.37	0.00	4.7	95.3	0.0	1.52	0.71	0.78	2.05	3.6	0.005	0.67	0.0	0.04	16.72	0.00	2.083	11.66	2.48	4.5	95.5	0.0	0.87	1.10	0.76	0.86	1.89	68780	8444	8	0	88	0	0	logfile
✔	7T3M	25663	2024-02-21	2021-12-08	3.0	3.51	3.03	3.4	0.003	0.59	0.0	0.05	13.24	0.00	2.194	3.62	0.03	2.9	97.1	0.0	-0.02	0.80	0.80	3.10	3.4	0.003	0.60	0.0	0.04	14.62	0.00	2.176	5.47	2.30	3.6	96.4	0.0	0.08	1.34	0.80	0.82	2.99	30099	3771	15	0	51	0	0	logfile
✔	7T3P	25667	2024-02-16	2021-12-08	3.2	3.52	3.32	3.5	0.004	0.54	0.0	0.04	14.83	0.00	2.019	8.33	0.00	4.1	95.9	0.0	1.75	0.67	0.70	2.04	3.5	0.003	0.61	0.0	0.04	16.22	0.00	2.116	10.99	2.02	3.2	96.8	0.0	1.30	1.82	0.70	0.77	2.07	66992	8188	8	0	88	0	0	logfile
✔	7T3N	25665	2024-02-13	2021-12-08	3.0	3.31	—	3.3	0.009	0.73	0.0	0.05	16.81	0.01	2.131	5.13	0.00	4.7	95.3	0.0	-3.24	0.51	0.85	3.81	3.3	0.003	0.63	0.0	0.04	15.58	0.00	2.287	7.63	1.45	2.9	97.1	0.0	0.20	0.40	0.49	0.84	2.67	3512	452	1	0	2	0	0	logfile
✔	7T3U	25671	2024-02-24	2021-12-08	3.7	4.00	3.79	3.8	0.002	0.45	0.0	0.04	12.94	0.00	1.968	6.33	0.00	4.2	95.8	0.0	1.94	0.59	0.60	1.23	3.8	0.020	1.27	0.0	0.06	15.31	0.01	1.941	22.33	7.81	10.1	89.8	0.1	-0.80	2.21	0.64	0.71	1.23	44501	7269	8	0	14	0	0	logfile
✔	7QG0	13951	2024-02-19	2021-12-07	4.02	4.24	—	4.0	0.006	0.84	0.0	0.04	14.92	0.00	2.062	26.03	1.71	10.1	89.9	0.0	-4.81	0.85	0.81	—	4.0	0.003	0.65	0.0	0.04	14.54	0.00	2.190	15.06	0.00	4.7	95.3	0.0	0.53	0.76	0.84	0.79	—	78880	10096	16	0	0	0	0	logfile
✔	7T3A	25652	2024-02-19	2021-12-07	4.0	4.44	—	4.2	0.006	1.20	1.0	0.07	15.61	0.01	2.234	7.29	0.04	9.3	90.7	0.0	-3.22	0.81	0.81	—	4.2	0.003	0.73	0.0	0.04	16.81	0.00	2.154	15.22	2.28	7.1	92.9	0.0	-1.29	0.47	0.81	0.80	—	23310	2897	11	0	1	0	0	logfile
✔	7W88	32353	2024-02-13	2021-12-07	3.5	3.65	—	3.6	0.003	0.71	0.0	0.04	16.87	0.00	2.225	15.29	8.23	15.2	84.8	0.0	-5.15	0.70	0.69	1.82	3.6	0.004	0.75	0.0	0.04	17.76	0.01	2.152	18.24	8.10	18.5	81.5	0.0	-3.48	0.48	0.70	0.70	1.62	7138	896	1	0	0	0	0	logfile
✔	7W8G	32355	2024-02-14	2021-12-07	2.52	2.20	—	2.5	0.004	0.77	0.0	0.05	14.00	0.01	2.042	5.41	0.04	2.3	97.7	0.0	-0.29	0.72	0.75	2.86	2.5	0.003	0.68	2.0	0.04	16.94	0.00	1.769	8.53	2.76	2.2	97.8	0.0	0.79	0.50	0.75	0.80	2.84	62460	7876	24	0	34	0	0	logfile
✔	7QG9	13953	2024-02-25	2021-12-07	3.45	3.10	3.41	3.3	0.003	0.54	0.0	0.04	13.21	0.00	2.156	8.97	0.00	3.3	96.7	0.0	-1.73	0.75	0.83	2.63	3.3	0.004	0.58	0.0	0.05	15.31	0.00	2.089	9.21	2.41	4.0	96.0	0.0	-1.33	0.40	0.77	0.85	2.40	50829	6576	27	0	0	0	0	logfile
✔	7QG8	13952	2024-02-27	2021-12-07	3.97	7.71	—	4.0	0.016	1.62	61.0	0.11	22.93	0.01	0.770	4.86	1.61	8.6	90.4	1.0	-3.97	0.64	0.40	0.16	4.0	0.003	0.74	0.0	0.04	24.56	0.01	1.902	35.77	2.68	10.2	89.7	0.1	-2.28	3.35	0.84	0.76	-0.02	147108	5936	58	4695	3	9	0	logfile
✔	7W8J	32357	2024-02-20	2021-12-07	2.5	2.29	2.50	2.5	0.014	1.62	0.0	0.08	14.21	0.00	1.909	2.70	0.24	2.5	97.5	0.0	-0.35	0.60	0.76	5.44	2.4	0.004	0.60	0.0	0.05	15.52	0.00	1.862	4.82	1.73	2.9	97.1	0.0	0.58	1.13	0.77	0.89	5.11	28678	3548	20	0	4	290	0	logfile
✔	7W84	32351	2024-02-16	2021-12-07	3.4	2.66	—	3.4	0.004	0.74	1.0	0.05	16.68	0.00	1.982	18.13	7.85	12.9	87.0	0.1	-3.60	0.79	0.78	1.21	3.5	0.006	1.14	1.0	0.06	18.07	0.01	1.676	23.16	5.04	9.8	90.2	0.0	-1.80	0.53	0.80	0.79	1.44	7879	995	1	0	0	0	0	logfile
✔	7T37	25650	2024-02-17	2021-12-07	3.7	4.02	—	4.0	0.007	0.85	0.0	0.05	13.20	0.01	2.247	4.17	0.00	3.8	96.2	0.0	-1.43	0.69	0.82	2.15	4.0	0.003	0.51	0.0	0.03	14.20	0.00	2.304	5.90	1.16	3.1	96.9	0.0	1.29	0.28	0.69	0.82	1.91	20176	2476	8	0	8	0	0	logfile

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