Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W3V	32294	2024-02-13	2021-11-26	3.11	2.33	3.12	2.1	0.004	0.65	0.0	0.05	17.08	0.00	2.228	7.96	0.12	5.7	94.3	0.0	-2.67	0.79	0.79	3.31	2.1	0.003	0.63	0.0	0.05	15.05	0.00	2.196	7.56	2.96	6.7	93.3	0.0	-2.48	0.31	0.80	0.82	2.98	7480	918	8	0	24	0	0	logfile
✔	7SYJ	25530	2024-02-19	2021-11-25	4.8	3.85	4.49	3.7	0.003	0.79	0.0	0.04	21.81	0.01	2.240	5.37	0.02	6.1	93.9	0.0	-2.97	0.71	0.63	—	3.6	0.003	0.60	0.0	0.03	21.87	0.00	2.000	15.62	0.00	6.9	93.1	0.0	-1.42	1.29	0.74	0.68	—	78761	4891	38	1859	2	0	0	logfile
✔	7W39	32274	2024-02-13	2021-11-25	3.2	4.39	—	2.8	0.004	0.81	0.0	0.05	13.53	0.01	1.455	5.26	0.15	5.9	94.1	0.0	-0.76	0.83	0.81	2.04	2.8	0.003	0.59	0.0	0.04	14.73	0.00	1.860	9.80	0.77	5.8	94.2	0.0	0.84	0.34	0.86	0.84	1.64	106442	13535	56	0	21	0	0	logfile
✔	7W37	32272	2024-02-13	2021-11-25	3.0	4.26	—	2.8	0.004	0.80	0.0	0.05	14.12	0.01	1.712	5.02	0.15	5.8	94.1	0.1	-0.60	0.85	0.84	2.30	2.8	0.004	0.63	0.0	0.04	15.43	0.00	1.820	10.20	0.83	6.1	93.8	0.1	0.75	0.34	0.86	0.88	2.00	106025	13527	54	0	13	0	0	logfile
✔	7SYW	25543	2024-02-20	2021-11-25	3.7	3.40	3.64	3.3	0.003	0.78	0.0	0.04	21.65	0.01	1.987	3.98	0.02	4.9	95.1	0.0	-2.35	0.74	0.80	2.01	3.3	0.003	0.59	0.0	0.04	21.95	0.00	1.912	10.08	3.44	5.6	94.4	0.0	-0.83	0.42	0.74	0.81	1.93	86759	5622	41	1960	4	0	0	logfile
✔	7W3G	32279	2024-02-14	2021-11-25	3.2	4.83	—	2.8	0.004	0.76	0.0	0.05	14.17	0.01	2.137	5.57	0.31	6.1	93.8	0.1	-0.51	0.81	0.72	2.07	2.8	0.003	0.57	0.0	0.04	15.12	0.00	2.050	10.43	0.95	6.1	93.8	0.1	0.95	0.80	0.83	0.76	1.77	110741	14074	55	0	40	0	0	logfile
✔	7W3F	32278	2024-02-14	2021-11-25	3.3	4.49	—	3.0	0.003	0.74	0.0	0.05	13.77	0.01	2.190	5.42	0.15	6.2	93.7	0.1	-0.80	0.83	0.80	1.91	3.0	0.004	0.60	0.0	0.04	14.91	0.00	2.021	11.19	0.85	6.7	93.3	0.0	0.90	0.36	0.86	0.85	1.78	110751	14074	55	0	42	0	0	logfile
✔	7SYX	25544	2024-02-20	2021-11-25	3.7	3.14	3.72	3.1	0.003	0.78	0.0	0.04	21.84	0.01	2.127	4.27	0.00	4.6	95.4	0.0	-2.35	0.55	0.69	1.39	3.1	0.003	0.57	0.0	0.03	22.22	0.00	1.894	10.25	3.77	5.1	94.9	0.0	-1.18	1.05	0.56	0.71	1.41	86744	5622	41	1960	3	0	0	logfile
✔	7W38	32273	2024-02-13	2021-11-25	3.1	4.31	—	2.8	0.004	0.80	0.0	0.05	14.03	0.01	1.750	5.47	0.18	5.7	94.2	0.1	-0.59	0.84	0.80	2.24	2.8	0.004	0.59	0.0	0.04	15.21	0.00	1.825	10.22	0.94	5.9	94.0	0.1	0.78	0.76	0.87	0.88	1.88	106178	13539	55	0	13	0	0	logfile
✔	7SZ4	25560	2024-02-25	2021-11-25	4.8	7.97	4.67	3.9	0.003	0.79	0.0	0.05	14.41	0.01	2.097	25.58	0.02	18.8	80.5	0.7	-3.20	0.89	0.78	—	4.1	0.004	0.83	0.0	0.05	14.66	0.01	2.095	35.03	0.00	20.3	79.0	0.7	-3.12	0.50	0.89	0.79	—	48242	5973	12	0	0	0	0	logfile
✔	7SYT	25540	2024-02-19	2021-11-25	4.4	3.44	4.34	3.4	0.004	0.85	0.0	0.04	22.12	0.01	2.271	4.86	0.07	5.0	95.0	0.0	-2.59	0.59	0.63	—	3.4	0.004	0.67	0.0	0.04	22.01	0.01	2.037	15.41	0.05	6.7	93.3	0.0	-1.08	1.11	0.60	0.66	—	80962	4896	38	1960	1	0	0	logfile
✔	7SYi	25529	2024-02-19	2021-11-25	4.5	3.59	4.35	3.4	0.004	0.87	0.0	0.04	22.09	0.01	2.213	5.70	0.00	6.6	93.3	0.0	-2.89	0.67	0.65	—	3.4	0.003	0.65	0.0	0.04	22.09	0.00	2.038	16.78	0.00	7.7	92.3	0.0	-1.87	1.42	0.68	0.67	—	78761	4891	38	1859	2	0	0	logfile
✔	7SZ0	25558	2024-02-18	2021-11-25	3.3	4.16	—	3.5	0.005	0.79	0.0	0.05	14.46	0.00	2.175	6.34	1.73	11.1	88.6	0.3	-4.37	0.87	0.82	2.87	3.5	0.003	0.66	0.0	0.04	14.87	0.00	2.163	7.04	1.73	8.0	91.9	0.1	-1.54	0.46	0.92	0.88	2.71	10216	1322	4	0	0	0	0	logfile
✔	7SYH	25528	2024-02-19	2021-11-25	4.6	3.30	4.36	3.2	0.003	0.79	2.0	0.04	21.81	0.01	2.250	5.14	0.02	5.7	94.2	0.0	-2.97	0.62	0.60	—	3.2	0.005	0.85	0.0	0.04	22.32	0.01	2.049	20.92	0.02	10.0	90.0	0.0	-1.97	1.20	0.63	0.63	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYo	25535	2024-02-19	2021-11-25	4.6	3.80	4.55	3.8	0.003	0.85	0.0	0.04	22.28	0.01	2.226	5.43	0.05	5.1	94.9	0.0	-2.93	0.62	0.68	—	3.7	0.005	0.76	0.0	0.04	22.34	0.01	1.941	19.15	0.07	9.3	90.7	0.0	-1.72	0.60	0.63	0.70	—	78846	4891	38	1863	2	0	0	logfile
✔	7SZ1	25559	2024-02-18	2021-11-25	3.4	4.37	—	3.5	0.005	0.79	0.0	0.05	14.47	0.00	2.092	10.94	1.65	14.5	85.3	0.2	-4.74	0.85	0.75	1.55	3.6	0.003	0.68	0.0	0.04	15.42	0.00	2.098	12.69	2.43	11.0	88.9	0.1	-2.51	2.25	0.90	0.83	1.25	10216	1322	4	0	0	0	0	logfile
✔	7QCU	13899	2024-02-13	2021-11-25	3.25	4.07	—	3.7	0.013	2.18	65.0	0.16	20.45	0.03	1.868	25.18	6.94	6.9	93.1	0.0	-1.89	0.80	0.66	2.63	3.6	0.004	0.81	0.0	0.05	16.53	0.00	2.196	12.41	3.28	8.0	92.0	0.0	-1.20	0.68	0.88	0.83	2.68	7069	888	6	0	20	0	0	logfile
✔	7SYG	25527	2024-02-19	2021-11-25	4.3	3.38	4.15	3.2	0.003	0.74	0.0	0.04	22.16	0.01	2.257	4.87	0.00	5.1	94.8	0.0	-2.54	0.65	0.65	—	3.2	0.005	0.77	0.0	0.04	22.32	0.01	1.995	17.90	0.02	8.6	91.4	0.0	-1.79	1.09	0.66	0.68	—	78773	4891	38	1859	2	0	0	logfile
✔	7SYQ	25537	2024-02-19	2021-11-25	3.8	3.49	3.72	3.3	0.003	0.78	2.0	0.04	22.10	0.01	2.235	4.15	0.09	4.8	95.1	0.0	-2.55	0.74	0.76	1.18	3.3	0.004	0.61	1.0	0.04	22.29	0.00	2.088	11.44	3.32	5.2	94.8	0.0	-0.74	1.04	0.75	0.79	1.20	81427	4997	39	1944	2	0	0	logfile
✔	7SYR	25538	2024-02-20	2021-11-25	3.6	3.11	3.52	3.0	0.003	0.81	0.0	0.04	22.02	0.01	2.281	4.37	0.14	4.8	95.2	0.0	-2.24	0.63	0.68	0.87	3.0	0.005	0.68	0.0	0.04	22.54	0.00	1.989	11.75	4.32	6.5	93.5	0.0	-0.83	1.77	0.67	0.78	1.75	83005	5177	40	1960	1	0	0	logfile

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