Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PJB	17703	2024-02-16	2023-06-23	3.62	4.40	3.69	4.1	0.006	0.99	2.0	0.06	18.76	0.03	2.096	11.57	4.25	5.6	93.2	1.2	-0.17	0.82	0.71	1.58	4.1	0.003	0.81	0.0	0.04	17.78	0.01	2.155	13.36	3.31	4.4	95.4	0.2	0.34	0.79	0.86	0.84	1.84	7840	962	3	9	2	0	0	logfile
✔	8PJN	17713	2024-02-13	2023-06-23	3.4	3.52	3.41	3.6	0.007	0.73	0.0	0.05	14.18	0.01	1.512	5.43	0.00	5.1	94.9	0.0	1.04	0.78	0.86	2.67	3.5	0.003	0.50	0.0	0.04	15.82	0.00	2.209	4.33	1.88	4.3	95.7	0.0	1.40	0.29	0.79	0.89	2.60	6917	923	6	0	2	0	0	logfile
✔	8PK0	17719	2024-02-13	2023-06-23	3.03	3.28	3.25	3.1	0.003	0.50	1.0	0.04	17.62	0.01	1.939	7.09	1.05	2.1	97.8	0.1	1.49	0.72	0.81	2.67	3.2	0.004	0.62	0.0	0.04	18.95	0.00	1.855	10.31	1.91	2.4	97.5	0.0	1.16	1.20	0.73	0.84	2.37	108702	9742	66	1495	111	0	0	logfile
✔	8PJJ	17711	2024-02-16	2023-06-23	4.24	6.93	4.39	4.4	0.003	0.75	0.0	0.04	17.53	0.00	2.120	19.23	0.72	9.6	90.1	0.3	-1.14	0.91	0.81	—	4.4	0.003	0.69	0.0	0.04	17.14	0.00	2.103	20.70	0.24	9.1	90.5	0.3	-1.00	1.01	0.92	0.83	—	8348	946	3	40	1	0	0	logfile
✔	8T8F	41098	2024-02-15	2023-06-22	4.8	5.11	4.71	4.7	0.003	0.75	1.0	0.05	13.37	0.00	2.201	18.73	0.14	7.3	92.7	0.0	-1.53	0.76	0.63	—	4.7	0.003	0.70	0.0	0.04	13.86	0.00	2.130	16.13	0.07	7.5	92.5	0.0	-0.70	0.77	0.77	0.67	—	13050	1623	5	0	0	0	0	logfile
✔	8T8E	41097	2024-02-14	2023-06-22	3.3	3.54	3.33	3.5	0.003	0.69	0.0	0.04	16.79	0.00	2.199	12.90	1.03	9.0	90.9	0.2	-3.74	0.72	0.78	1.57	3.5	0.005	0.68	0.0	0.04	17.63	0.00	2.114	12.50	4.41	9.9	90.1	0.0	-2.60	0.36	0.75	0.80	1.12	8755	1085	3	0	0	0	0	logfile
✔	8PiV	17692	2024-02-17	2023-06-22	3.46	3.80	3.35	3.5	0.017	1.48	5.0	0.10	15.86	0.01	2.127	4.62	1.59	3.6	96.0	0.4	-0.16	0.54	0.51	2.31	3.5	0.003	0.67	0.0	0.04	15.47	0.00	2.162	10.17	2.35	2.2	97.6	0.2	1.92	1.66	0.68	0.83	1.73	18089	2293	21	0	16	6	0	logfile
✔	8T8M	41099	2024-02-15	2023-06-22	3.0	3.51	—	3.4	0.004	0.52	0.0	0.04	13.97	0.00	2.230	6.14	0.00	4.3	95.7	0.0	0.12	0.80	0.81	3.02	3.4	0.003	0.55	0.0	0.04	15.56	0.00	2.155	5.86	1.59	4.6	95.4	0.0	0.56	0.25	0.82	0.86	2.84	13146	1770	6	0	2	0	0	logfile
✔	8JTA	36638	2024-02-13	2023-06-21	3.36	3.64	3.38	3.6	0.012	1.27	0.0	0.07	14.16	0.01	2.320	7.70	2.67	5.5	94.5	0.0	-2.72	0.63	0.85	1.70	3.6	0.004	0.78	0.0	0.04	15.76	0.01	2.293	5.48	3.33	3.4	96.6	0.0	1.03	0.97	0.62	0.87	1.81	2879	386	2	0	1	0	0	logfile
✔	8JTD	36641	2024-02-17	2023-06-21	4.9	4.51	4.64	4.6	0.005	0.93	0.0	0.07	17.49	0.00	2.048	20.29	0.00	3.8	96.1	0.1	-0.29	0.63	0.55	—	4.6	0.003	0.78	0.0	0.05	12.46	0.00	2.122	17.40	0.00	4.1	95.9	0.0	-0.36	0.61	0.66	0.63	—	17275	1978	51	0	128	0	0	logfile
✔	8JTC	36640	2024-02-13	2023-06-21	3.52	3.71	3.55	3.7	0.007	1.06	0.0	0.05	14.57	0.01	2.240	7.41	0.33	3.4	96.6	0.0	1.13	0.56	0.81	1.82	3.7	0.004	0.72	0.0	0.04	15.63	0.00	2.344	8.25	4.61	3.4	96.6	0.0	1.99	0.28	0.57	0.81	1.66	2941	391	2	0	1	0	0	logfile
✔	8T7E	41091	2024-02-16	2023-06-20	3.08	3.40	3.07	3.3	0.005	1.09	0.0	0.06	18.22	0.01	2.288	6.80	0.69	7.6	92.3	0.1	-2.94	0.70	0.63	1.75	3.3	0.003	0.80	0.0	0.06	19.42	0.00	2.178	15.78	2.43	8.5	91.2	0.2	-1.20	0.60	0.75	0.76	1.94	14273	1706	5	36	0	0	0	logfile
✔	8PHP	17670	2024-02-24	2023-06-20	2.56	2.99	2.40	2.8	0.001	0.32	0.0	0.04	12.91	0.00	2.357	1.69	0.00	1.5	98.5	0.0	1.55	0.77	0.89	3.59	2.8	0.003	0.56	0.0	0.04	15.67	0.00	2.173	6.09	1.71	2.0	98.0	0.0	1.80	1.35	0.76	0.91	3.20	40812	4968	24	0	0	0	0	logfile
✔	8JSo	36625	2024-02-14	2023-06-20	3.4	3.73	3.46	3.7	0.003	0.67	0.0	0.04	13.94	0.00	2.220	9.19	0.10	5.1	94.9	0.0	-0.64	0.65	0.80	1.60	3.7	0.003	0.67	0.0	0.04	15.78	0.00	2.169	8.97	2.54	4.5	95.5	0.0	-0.11	0.93	0.64	0.81	0.82	9045	1145	6	0	1	0	0	logfile
✔	8JSP	36626	2024-02-14	2023-06-20	3.65	3.82	3.55	3.8	0.007	0.83	0.0	0.05	14.07	0.00	2.204	13.73	0.86	5.9	94.1	0.0	-0.89	0.61	0.71	1.51	3.8	0.004	0.68	0.0	0.04	16.06	0.00	2.178	11.68	3.24	5.1	94.9	0.0	-0.54	1.06	0.64	0.73	1.35	8599	1102	6	0	1	0	0	logfile
✔	8T7A	41089	2024-02-16	2023-06-20	2.8	2.99	2.78	3.0	0.005	0.71	0.0	0.05	13.49	0.01	2.212	7.47	0.66	2.0	98.0	0.0	0.46	0.70	0.83	3.76	3.0	0.003	0.52	0.0	0.04	15.33	0.00	2.169	5.70	3.81	1.5	98.5	0.0	0.99	0.33	0.70	0.85	3.67	15819	2040	15	0	3	0	0	logfile
✔	8JSN	36624	2024-02-16	2023-06-20	3.4	3.48	3.33	3.4	0.003	0.58	0.0	0.04	15.44	0.00	2.234	5.28	0.06	5.7	93.9	0.5	0.77	0.78	0.85	2.32	3.4	0.003	0.60	0.0	0.04	16.76	0.00	2.196	6.17	1.29	5.4	94.1	0.5	1.09	0.32	0.80	0.88	2.25	14856	1856	7	10	1	0	0	logfile
✔	8JSL	36622	2024-02-16	2023-06-20	2.95	3.14	2.85	3.1	0.003	0.55	0.0	0.04	14.70	0.00	2.203	3.93	0.00	6.2	93.4	0.5	0.78	0.77	0.88	2.99	3.1	0.003	0.62	0.0	0.04	16.83	0.00	2.184	4.72	1.89	6.2	93.4	0.5	1.02	0.91	0.77	0.90	2.63	14069	1751	7	10	1	0	0	logfile
✔	8PHW	17677	2024-02-13	2023-06-20	3.6	2.46	3.63	2.1	0.005	0.72	0.0	0.04	12.28	0.01	2.209	10.93	6.20	7.5	92.5	0.0	-3.65	0.72	0.72	2.10	2.1	0.003	0.63	0.0	0.04	14.34	0.00	2.145	8.31	6.54	6.3	93.7	0.0	-0.23	0.68	0.71	0.72	2.11	5359	689	5	0	2	0	0	logfile
✔	8PHo	17669	2024-02-21	2023-06-20	2.34	2.07	2.33	2.2	0.005	0.77	0.0	0.06	13.64	0.01	2.128	1.78	0.00	1.0	99.0	0.0	-0.02	0.73	0.85	3.99	2.2	0.003	0.51	0.0	0.04	17.01	0.00	2.219	2.75	1.18	0.6	99.4	0.0	1.27	0.49	0.72	0.85	4.55	32172	3804	12	0	0	720	0	logfile

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