Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oLU	16963	2024-02-25	2023-03-30	2.59	2.36	2.57	2.6	0.018	2.11	67.0	0.10	17.31	0.03	2.180	7.21	5.92	4.0	95.4	0.6	-2.77	0.82	0.89	4.42	2.5	0.003	0.58	0.0	0.04	17.40	0.00	2.059	8.26	1.53	1.7	98.2	0.0	1.25	1.20	0.77	0.85	4.03	48930	6316	30	0	2	0	0	logfile
✔	8iWM	35771	2024-02-13	2023-03-30	3.17	3.65	2.80	3.5	0.004	0.76	0.0	0.04	14.98	0.00	2.390	9.55	5.26	3.4	96.6	0.0	-2.66	0.56	0.76	2.24	3.5	0.003	0.61	0.0	0.04	15.59	0.00	2.217	9.03	5.26	2.6	97.4	0.0	0.05	1.18	0.59	0.78	1.89	1980	271	1	0	1	0	0	logfile
✔	8oLX	16964	2024-02-16	2023-03-30	3.1	2.39	3.11	2.1	0.007	0.97	0.0	0.07	19.71	0.01	1.992	17.01	2.00	5.4	94.6	0.0	-0.32	0.77	0.78	2.47	2.1	0.004	0.83	0.0	0.04	20.18	0.00	1.775	15.03	3.53	4.5	95.5	0.0	0.03	0.30	0.75	0.76	2.39	14492	1699	5	45	2	0	0	logfile
✔	8S9S	40245	2024-02-17	2023-03-30	3.6	4.36	3.68	3.9	0.005	0.82	0.0	0.04	18.62	0.01	2.184	12.32	0.59	5.2	94.8	0.0	0.03	0.79	0.85	1.93	3.9	0.003	0.60	0.0	0.04	17.75	0.00	2.173	12.49	2.41	4.3	95.7	0.0	0.26	0.40	0.79	0.87	1.58	18012	2262	15	0	13	0	0	logfile
✔	8oLQ	16961	2024-02-13	2023-03-30	4.0	3.17	3.52	3.7	0.003	0.49	0.0	0.05	7.64	0.00	2.207	3.69	0.00	0.0	100.0	0.0	-0.52	0.25	0.70	—	3.4	0.002	0.47	0.0	0.05	13.94	0.00	2.277	7.79	2.40	4.7	95.3	0.0	-1.51	1.42	0.24	0.70	—	2445	160	5	0	0	0	1185	logfile
✔	8oL5	16949	2024-02-13	2023-03-30	3.4	3.10	1.47	3.0	0.003	0.44	0.0	0.06	9.97	0.00	2.393	2.17	0.00	0.0	100.0	0.0	-0.75	0.53	0.87	5.76	3.0	0.002	0.37	0.0	0.05	15.49	0.00	2.326	3.70	3.91	2.1	97.9	0.0	-1.20	1.02	0.55	0.88	5.14	2260	310	10	0	0	0	0	logfile
✔	8S9P	40241	2024-02-14	2023-03-29	3.8	4.16	3.92	4.0	0.005	0.82	0.0	0.05	17.16	0.01	2.024	21.44	1.88	9.3	90.5	0.2	-2.07	0.80	0.78	1.62	4.0	0.003	0.75	0.0	0.05	17.36	0.00	2.139	17.84	4.84	7.5	92.5	0.0	-1.98	0.96	0.80	0.78	1.66	9288	1189	3	0	0	0	0	logfile
✔	8iW7	35763	2024-02-14	2023-03-29	2.97	3.20	2.95	3.3	0.004	0.71	0.0	0.04	15.12	0.00	2.214	9.35	1.85	3.8	96.2	0.0	-1.84	0.67	0.78	2.02	3.2	0.003	0.62	0.0	0.04	15.55	0.00	2.209	7.66	2.72	3.8	96.2	0.0	-0.66	0.36	0.67	0.77	1.65	8305	1129	6	0	1	0	0	logfile
✔	8iW1	35761	2024-02-14	2023-03-29	3.4	2.38	3.19	2.2	0.007	0.86	1.0	0.06	15.68	0.01	2.179	10.19	0.59	5.6	94.4	0.0	-1.82	0.77	0.71	1.64	2.2	0.003	0.62	0.0	0.04	16.97	0.00	2.040	7.22	4.49	4.9	95.1	0.0	-0.25	0.53	0.77	0.76	1.87	8327	1107	5	0	0	0	0	logfile
✔	8iW9	35764	2024-02-14	2023-03-29	3.08	3.58	2.85	3.3	0.003	0.66	1.0	0.05	14.65	0.00	2.168	8.27	0.61	4.4	95.6	0.0	0.21	0.78	0.88	3.16	3.3	0.005	0.86	1.0	0.04	15.27	0.01	2.150	5.83	2.77	4.5	95.5	0.0	1.12	0.37	0.79	0.89	3.07	9693	1293	6	0	0	0	0	logfile
✔	8oKR	16930	2024-02-13	2023-03-29	2.86	3.36	2.66	3.4	0.007	1.56	0.0	0.09	22.91	0.01	1.489	4.96	0.00	0.0	100.0	0.0	-4.51	0.55	0.67	7.31	3.4	0.190	6.52	60.0	0.43	29.21	0.04	1.639	169.69	15.48	50.0	38.3	11.7	-7.72	2.21	0.63	0.89	1.62	1608	168	24	0	0	0	0	logfile
✔	8iW4	35762	2024-02-13	2023-03-29	3.49	2.95	3.34	3.3	0.003	0.81	2.0	0.06	14.91	0.00	2.143	9.81	1.39	4.6	95.4	0.0	-0.63	0.58	0.74	1.89	3.3	0.002	0.52	0.0	0.04	16.14	0.00	2.187	6.11	2.77	4.2	95.8	0.0	-0.20	0.97	0.63	0.81	1.67	7900	1045	6	0	1	0	0	logfile
✔	8iWE	35765	2024-02-13	2023-03-29	3.4	3.95	3.24	3.8	0.004	0.93	1.0	0.07	16.00	0.00	2.321	10.10	2.84	5.9	94.1	0.0	-0.50	0.58	0.79	2.37	3.8	0.002	0.59	0.0	0.04	15.57	0.00	2.180	4.59	1.90	5.2	94.8	0.0	0.40	1.01	0.63	0.86	1.79	2236	296	1	0	1	0	0	logfile
✔	8iVQ	35759	2024-02-24	2023-03-28	3.6	3.71	3.56	3.6	0.005	1.00	0.0	0.05	13.29	0.01	2.234	5.02	0.00	1.9	98.1	0.0	-1.01	0.73	0.69	1.08	3.6	0.003	0.64	0.0	0.04	15.01	0.00	2.134	10.63	1.61	1.9	98.1	0.0	1.63	1.54	0.79	0.79	0.97	41900	5842	2	0	0	0	0	logfile
✔	8S9G	40240	2024-02-13	2023-03-28	3.0	3.31	3.00	3.3	0.010	1.29	0.0	0.08	11.61	0.00	2.064	5.11	1.22	2.2	97.6	0.2	-0.22	0.58	0.62	3.80	3.3	0.003	0.59	0.0	0.04	13.04	0.00	2.257	6.92	2.04	2.3	97.7	0.0	1.05	0.52	0.59	0.67	3.41	7004	986	7	0	10	0	0	logfile
✔	8GMR	40231	2024-02-15	2023-03-27	3.76	4.01	3.82	4.0	0.006	1.18	0.0	0.04	17.02	0.01	1.574	20.59	0.00	12.6	87.0	0.5	-5.54	0.62	0.81	3.92	4.0	0.003	0.77	0.0	0.04	16.44	0.00	2.352	3.93	2.57	8.8	91.2	0.0	-0.10	2.18	0.60	0.79	1.27	12472	1712	16	0	8	0	0	logfile
✔	8GMP	40229	2024-02-16	2023-03-27	2.8	3.00	2.80	3.0	0.006	1.09	0.0	0.05	17.18	0.01	2.357	12.47	2.96	4.8	95.2	0.0	-6.76	0.65	0.82	2.44	3.0	0.004	0.70	0.0	0.04	18.20	0.01	2.551	3.31	3.77	5.7	94.3	0.0	-0.53	0.53	0.59	0.81	2.85	13656	1728	16	0	8	0	0	logfile
✔	8S91	40234	2024-02-20	2023-03-27	4.3	4.49	4.31	4.4	0.003	0.71	0.0	0.04	15.79	0.00	1.964	7.71	0.00	9.4	90.1	0.4	-1.63	0.76	0.75	—	4.4	0.003	0.72	0.0	0.04	15.21	0.00	1.882	8.53	0.03	10.9	88.7	0.4	-1.61	0.56	0.77	0.78	—	29019	3669	12	0	12	0	0	logfile
✔	8S94	40236	2024-02-16	2023-03-27	3.94	4.20	4.00	4.2	0.003	0.75	0.0	0.04	16.60	0.00	2.192	6.50	0.11	9.3	90.1	0.5	-2.07	0.76	0.84	1.28	4.2	0.003	0.68	0.0	0.04	17.65	0.00	1.976	5.64	3.51	9.0	90.5	0.4	-1.30	0.32	0.76	0.84	1.06	16305	2079	12	0	12	0	0	logfile
✔	8S92	40235	2024-02-15	2023-03-27	4.06	4.32	4.09	4.3	0.004	0.68	0.0	0.04	14.72	0.01	2.043	6.52	0.00	13.5	86.1	0.4	-2.24	0.74	0.80	—	4.3	0.002	0.62	0.0	0.04	14.75	0.00	2.233	5.58	0.00	11.4	88.2	0.4	-2.25	0.36	0.75	0.81	—	12714	1590	6	0	0	0	0	logfile

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