Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8iPR	35641	2024-02-16	2023-03-14	3.0	3.90	2.97	3.4	0.004	0.71	0.0	0.04	16.94	0.00	1.978	11.32	0.13	5.9	94.0	0.1	1.55	0.72	0.81	1.76	3.4	0.003	0.68	0.0	0.04	16.40	0.00	1.881	7.41	2.20	5.2	94.8	0.0	2.03	0.54	0.72	0.89	1.27	14894	2038	8	0	8	0	0	logfile
✔	8iP3	35630	2024-02-15	2023-03-14	2.6	3.21	2.64	3.0	0.002	0.42	0.0	0.04	10.76	0.00	2.255	5.46	0.00	1.9	98.1	0.0	3.79	0.76	0.84	3.68	3.0	0.003	0.47	0.0	0.04	13.72	0.00	2.265	6.81	1.20	1.9	98.1	0.0	3.60	0.32	0.71	0.81	3.66	12868	1595	10	0	13	0	0	logfile
✔	8oEU	16835	2024-02-23	2023-03-13	3.04	3.08	—	3.0	0.006	0.90	4.0	0.06	15.25	0.01	2.072	6.82	0.10	3.2	96.8	0.0	-1.32	0.72	0.77	2.81	3.0	0.003	0.57	0.0	0.04	17.04	0.00	1.988	10.73	1.69	3.1	96.9	0.0	0.34	0.47	0.73	0.79	2.33	39178	4682	22	77	9	0	0	logfile
✔	8oF0	16840	2024-02-24	2023-03-13	3.05	3.32	3.00	3.0	0.006	0.83	0.0	0.05	15.14	0.01	2.057	8.12	0.02	3.7	96.3	0.0	-1.42	0.84	0.82	2.58	3.0	0.005	0.61	0.0	0.04	16.55	0.00	1.939	11.97	1.18	3.2	96.8	0.0	0.30	1.56	0.87	0.87	2.46	41700	5010	25	75	9	0	0	logfile
✔	8oEV	16837	2024-02-24	2023-03-13	2.86	3.13	—	2.8	0.005	0.80	0.0	0.05	15.54	0.01	2.005	8.92	0.00	3.5	96.5	0.0	-0.96	0.77	0.77	2.15	2.9	0.004	0.66	0.0	0.04	17.30	0.00	2.008	12.40	1.13	3.5	96.5	0.0	0.32	1.61	0.78	0.80	1.92	41781	5005	25	77	9	0	0	logfile
✔	8oEW	16838	2024-02-22	2023-03-13	2.8	2.88	—	2.8	0.005	0.78	0.0	0.05	15.70	0.01	2.087	6.13	0.00	3.3	96.7	0.0	-0.97	0.74	0.82	3.53	2.8	0.004	0.60	0.0	0.04	17.65	0.00	2.011	10.47	1.35	3.4	96.6	0.0	0.43	0.42	0.72	0.83	3.26	35037	4180	24	77	9	0	0	logfile
✔	8GHZ	40054	2024-02-20	2023-03-13	2.78	3.54	2.86	3.3	0.004	0.72	0.0	0.05	17.88	0.01	2.122	6.95	1.28	8.1	91.9	0.0	-2.42	0.78	0.78	3.09	3.3	0.004	0.63	0.0	0.04	15.07	0.00	2.016	6.74	1.71	5.5	94.5	0.0	-1.25	0.71	0.78	0.80	3.25	28223	1768	16	0	24	0	13833	logfile
✔	8ioT	35623	2024-02-19	2023-03-13	2.51	3.17	2.56	3.0	0.003	0.57	0.0	0.05	11.07	0.00	2.169	5.18	0.00	5.3	94.7	0.0	0.21	0.83	0.84	2.64	3.0	0.004	0.61	0.0	0.05	13.11	0.00	2.228	5.57	1.01	4.0	96.0	0.0	0.23	0.51	0.80	0.84	2.77	24642	3063	12	0	48	0	0	logfile
✔	8ioS	35622	2024-02-19	2023-03-13	2.5	3.18	2.60	3.1	0.003	0.54	0.0	0.05	12.91	0.00	2.195	4.04	0.00	2.9	97.1	0.0	0.45	0.83	0.87	3.69	3.0	0.005	0.62	0.0	0.05	13.80	0.00	2.117	4.71	0.72	4.8	95.2	0.0	0.25	0.26	0.81	0.86	3.97	25695	3189	15	0	54	0	0	logfile
✔	8Gi8	40062	2024-02-13	2023-03-13	2.88	3.11	2.77	3.1	0.010	1.16	0.0	0.09	26.08	0.00	1.935	11.74	0.00	2.1	97.9	0.0	1.50	0.58	0.78	3.81	3.1	0.003	0.57	0.0	0.04	18.46	0.01	2.186	13.63	1.13	3.2	96.8	0.0	0.59	0.44	0.62	0.81	2.73	6990	720	3	0	30	45	0	logfile
✔	8ioV	35626	2024-02-15	2023-03-13	3.29	4.02	3.36	3.7	0.003	0.62	0.0	0.06	13.94	0.00	2.222	5.90	0.00	3.7	96.3	0.0	1.31	0.84	0.82	3.00	3.7	0.002	0.54	0.0	0.04	12.24	0.00	2.235	5.66	0.29	3.3	96.7	0.0	1.58	1.06	0.85	0.85	2.61	6607	791	8	0	15	0	0	logfile
✔	8ioU	35624	2024-02-22	2023-03-13	3.18	3.64	3.26	3.4	0.003	0.57	0.0	0.06	13.11	0.00	2.202	5.18	0.00	3.5	96.5	0.0	0.28	0.79	0.80	2.10	3.5	0.003	0.56	0.0	0.05	13.55	0.00	2.168	7.38	0.96	4.3	95.7	0.0	0.34	0.46	0.83	0.87	1.90	29013	3577	18	0	60	0	0	logfile
✔	8Gi9	40063	2024-02-13	2023-03-13	2.84	3.09	2.82	3.1	0.009	1.11	0.0	0.10	15.91	0.00	1.878	8.12	0.00	4.6	95.4	0.0	1.20	0.57	0.79	4.20	3.1	0.003	0.53	0.0	0.04	14.03	0.01	2.132	5.77	0.65	4.9	95.1	0.0	0.12	0.34	0.61	0.81	2.96	6852	720	3	0	39	45	0	logfile
✔	8Gi2	40060	2024-02-18	2023-03-13	3.0	3.25	3.18	3.3	0.008	0.98	0.0	0.05	11.48	0.00	1.504	31.63	3.45	13.0	86.3	0.7	-3.41	0.55	0.82	2.11	3.2	0.004	0.82	0.0	0.05	15.98	0.00	2.151	11.63	5.34	9.1	90.9	0.0	-1.40	1.24	0.57	0.86	2.84	20820	2940	20	0	0	0	0	logfile
✔	8oF4	16845	2024-02-16	2023-03-13	2.94	2.89	—	2.9	0.014	1.97	4.0	0.09	25.75	0.03	2.486	0.19	0.58	3.6	96.4	0.0	-0.35	0.81	0.77	3.16	3.0	0.004	0.68	0.0	0.04	26.77	0.00	2.016	11.16	3.27	3.5	96.5	0.0	1.38	1.14	0.84	0.81	2.00	14087	1029	12	290	1	0	0	logfile
✔	8GHU	40051	2024-02-24	2023-03-12	3.0	3.91	2.97	3.6	0.006	0.74	4.0	0.06	22.44	0.00	2.190	7.98	3.01	11.1	88.9	0.1	-4.69	0.72	0.52	0.96	3.6	0.005	0.66	0.0	0.03	23.51	0.00	1.438	15.75	3.80	7.7	92.3	0.0	-2.98	1.60	0.75	0.53	1.73	47408	1828	20	1531	84	0	0	logfile
✔	8GHV	40052	2024-02-17	2023-03-12	2.8	3.09	2.84	3.1	0.005	0.92	0.0	0.05	14.04	0.01	2.190	3.46	0.76	3.3	96.7	0.0	0.26	0.59	0.79	3.50	3.1	0.004	0.63	0.0	0.04	14.40	0.00	2.174	3.02	1.65	5.2	94.8	0.0	0.72	0.97	0.67	0.86	4.14	15874	1125	6	0	1	0	7637	logfile
✔	8ioE	35617	2024-02-18	2023-03-11	2.86	3.66	2.96	3.4	0.004	0.49	0.0	0.04	10.29	0.00	2.048	8.82	0.78	3.4	96.6	0.0	0.02	0.87	0.85	4.01	3.3	0.003	0.56	0.0	0.04	12.02	0.00	1.956	10.26	1.37	3.9	96.1	0.0	0.74	0.35	0.86	0.85	3.33	75404	9454	24	0	24	0	0	logfile
✔	8ioL	35621	2024-02-20	2023-03-11	2.9	2.89	2.86	3.0	0.010	0.80	0.0	0.05	13.15	0.00	2.138	12.14	0.39	7.3	92.7	0.0	-3.11	0.58	0.74	3.50	3.0	0.003	0.63	0.0	0.04	16.38	0.00	2.203	11.22	1.79	4.8	95.2	0.0	0.02	1.17	0.72	0.84	2.89	27556	3516	8	0	0	0	0	logfile
✔	8ioJ	35620	2024-02-22	2023-03-11	4.1	3.57	4.01	3.8	0.014	1.04	15.0	0.07	16.28	0.01	1.645	18.24	6.13	10.9	88.9	0.2	-3.72	0.66	0.70	—	3.6	0.003	0.71	0.0	0.04	14.22	0.01	2.142	14.96	0.00	7.0	93.0	0.0	-0.85	1.19	0.71	0.76	—	34796	4454	15	0	0	0	0	logfile

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