Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HW2	35049	2024-02-15	2022-12-28	3.65	4.12	3.84	4.0	0.011	0.86	0.0	0.05	14.86	0.01	2.154	14.21	0.09	7.2	92.8	0.0	-2.33	0.69	0.80	1.01	4.0	0.003	0.73	0.0	0.04	16.55	0.00	2.229	12.20	2.64	6.9	93.1	0.0	-1.19	1.15	0.68	0.79	1.20	10853	1375	1	0	2	0	0	logfile
✔	8HW1	35080	2024-02-20	2022-12-28	3.13	3.07	2.93	3.2	0.028	2.49	0.0	0.29	22.71	0.03	2.137	14.51	6.74	11.3	88.7	0.0	-2.57	0.68	0.85	3.07	3.2	0.003	1.00	0.0	0.05	20.47	0.01	1.605	7.26	1.46	9.4	90.6	0.0	-0.42	0.44	0.67	0.86	3.24	29271	2651	22	0	143	0	0	logfile
✔	8FNU	29326	2024-02-24	2022-12-28	2.5	2.64	2.51	2.6	0.006	1.29	0.0	0.06	17.42	0.02	1.867	12.22	4.47	9.1	90.0	0.9	-0.70	0.62	0.75	2.44	2.6	0.003	0.64	0.0	0.04	17.95	0.00	2.162	9.64	2.65	7.5	91.5	1.0	0.50	1.27	0.69	0.83	2.59	46214	5572	7	0	0	0	0	logfile
✔	8FNC	29308	2024-02-17	2022-12-27	3.3	3.36	3.23	3.3	0.003	0.55	0.0	0.04	17.65	0.00	2.191	6.51	0.90	2.3	97.7	0.0	0.86	0.75	0.84	2.25	3.3	0.003	0.51	0.0	0.04	17.96	0.00	2.211	5.79	1.70	2.2	97.8	0.0	1.49	0.40	0.77	0.87	2.29	17017	2065	8	33	0	0	0	logfile
✔	8FNE	29310	2024-02-22	2022-12-27	3.9	4.66	—	4.1	0.018	1.78	0.0	0.10	11.33	0.01	2.452	0.27	0.00	1.0	99.0	0.0	0.31	0.56	0.44	0.56	4.1	0.004	0.67	0.0	0.04	16.16	0.01	1.969	17.76	2.88	4.8	95.2	0.0	-0.30	1.63	0.66	0.72	0.71	33508	2148	8	0	0	0	16644	logfile
✔	8FNi	29314	2024-02-20	2022-12-27	3.4	3.51	3.41	3.4	0.002	0.50	0.0	0.04	15.36	0.00	2.247	7.14	0.03	2.3	97.7	0.0	1.46	0.78	0.82	1.66	3.4	0.004	0.55	0.0	0.04	16.38	0.00	2.161	8.39	1.93	3.1	96.9	0.0	1.67	0.26	0.79	0.85	1.34	28858	3559	11	37	0	0	0	logfile
✔	8FN6	29306	2024-02-18	2022-12-27	3.7	3.97	3.74	4.0	0.003	0.65	0.0	0.04	17.58	0.00	2.196	11.03	0.60	6.0	93.9	0.0	-0.22	0.75	0.75	0.14	3.9	0.002	0.60	0.0	0.04	17.78	0.00	2.120	10.33	3.69	6.2	93.8	0.0	0.06	0.37	0.76	0.76	0.27	22421	2729	8	46	1	0	0	logfile
✔	8FNF	29311	2024-02-17	2022-12-27	3.5	3.74	3.58	3.8	0.004	0.66	0.0	0.04	18.02	0.00	2.212	8.53	1.02	3.2	96.8	0.0	0.62	0.68	0.76	0.99	3.7	0.004	0.60	0.0	0.04	18.46	0.00	2.190	5.90	2.83	3.4	96.6	0.0	1.64	1.22	0.73	0.82	0.90	17080	2065	8	36	0	0	0	logfile
✔	8HVT	35048	2024-02-15	2022-12-27	3.6	3.70	3.55	3.6	0.009	1.11	0.0	0.06	16.30	0.01	2.279	5.59	0.00	6.4	93.6	0.0	-2.49	0.61	0.88	3.03	3.6	0.003	0.64	0.0	0.04	15.94	0.00	2.189	8.39	1.75	4.7	95.3	0.0	2.19	0.36	0.61	0.87	2.13	10702	1366	8	0	12	0	0	logfile
✔	8FNK	29316	2024-02-21	2022-12-27	3.7	4.05	3.77	3.8	0.003	0.60	0.0	0.04	18.34	0.00	2.198	10.18	0.32	3.9	96.1	0.0	0.42	0.77	0.75	0.86	3.8	0.003	0.59	0.0	0.04	18.71	0.00	2.108	10.38	3.70	4.5	95.5	0.0	1.04	0.41	0.78	0.78	0.81	30831	3656	11	94	0	0	0	logfile
✔	8HVR	35047	2024-02-22	2022-12-27	3.35	3.51	3.40	3.4	0.004	0.72	0.0	0.05	17.11	0.01	2.199	7.13	0.12	2.7	97.3	0.0	-0.66	0.77	0.74	1.75	3.4	0.003	0.63	0.0	0.04	18.58	0.00	2.092	11.83	2.45	3.2	96.8	0.0	0.41	0.45	0.81	0.79	1.59	33932	4041	14	122	3	0	0	logfile
✔	8FN4	29305	2024-02-18	2022-12-26	3.7	3.85	3.80	3.8	0.003	0.55	0.0	0.04	13.16	0.00	2.208	11.82	0.80	6.3	93.7	0.0	-0.53	0.76	0.77	1.39	3.8	0.002	0.60	0.0	0.04	15.51	0.00	2.178	10.17	2.64	5.8	94.1	0.0	0.42	1.13	0.76	0.78	0.79	20638	2625	6	0	0	0	0	logfile
✔	8HVi	35044	2024-02-14	2022-12-26	3.04	4.28	3.02	3.2	0.005	0.96	0.0	0.05	15.41	0.01	2.255	9.87	0.62	3.8	96.1	0.1	-1.79	0.79	0.80	4.09	3.2	0.002	0.53	0.0	0.04	15.64	0.00	2.244	10.26	2.05	3.6	96.4	0.0	-0.08	0.27	0.88	0.92	3.97	8988	1148	6	0	1	0	0	logfile
✔	8FN2	29304	2024-02-20	2022-12-26	3.4	3.90	3.78	3.3	0.006	0.88	0.0	0.10	21.94	0.00	2.063	7.04	0.00	7.0	93.0	0.0	-1.00	0.79	0.79	1.35	3.3	0.005	0.98	0.0	0.10	22.80	0.00	1.985	16.32	3.30	6.4	93.6	0.0	-0.54	2.30	0.82	0.86	1.34	89742	3633	36	2874	2	0	0	logfile
✔	8FN1	29303	2024-02-14	2022-12-26	2.88	2.15	2.86	1.9	0.004	0.59	0.0	0.06	9.15	0.00	2.173	7.25	0.23	2.5	97.5	0.0	1.17	0.78	0.79	4.36	1.9	0.003	0.53	0.0	0.04	13.10	0.00	2.249	7.07	2.38	2.7	97.3	0.0	1.55	0.46	0.78	0.79	3.63	8444	1116	6	0	0	0	0	logfile
✔	8FMZ	29301	2024-02-14	2022-12-26	2.59	2.79	2.62	2.9	0.004	0.57	0.0	0.04	8.86	0.00	2.264	6.51	0.21	1.7	98.3	0.0	1.58	0.57	0.77	3.79	2.8	0.003	0.55	0.0	0.04	14.28	0.00	2.172	5.87	2.77	2.2	97.8	0.0	1.67	1.08	0.66	0.86	3.72	8768	1126	6	0	0	0	0	logfile
✔	8FMX	29299	2024-02-14	2022-12-26	3.37	4.30	3.60	3.9	0.005	0.93	0.0	0.06	14.52	0.01	2.404	0.43	0.00	2.6	97.4	0.0	-1.06	0.89	0.86	2.70	3.9	0.003	0.56	0.0	0.04	14.27	0.00	2.227	5.19	0.87	2.8	97.2	0.0	0.99	1.23	0.89	0.88	2.45	10329	1335	9	0	12	0	0	logfile
✔	8FMY	29300	2024-02-14	2022-12-26	2.66	3.65	2.84	3.4	0.008	1.16	0.0	0.06	12.10	0.01	2.417	0.31	0.00	2.2	97.8	0.0	-1.16	0.89	0.88	4.56	3.4	0.002	0.55	0.0	0.04	14.10	0.00	2.353	1.97	0.55	3.4	96.6	0.0	0.99	1.49	0.84	0.83	3.32	9597	1260	3	0	0	0	0	logfile
✔	8HVH	35043	2024-02-15	2022-12-26	3.07	3.42	3.30	3.5	0.005	0.76	0.0	0.05	14.43	0.00	2.107	10.76	0.00	6.3	93.7	0.0	-3.04	0.65	0.77	1.38	3.5	0.003	0.66	0.0	0.04	16.78	0.00	2.110	8.96	3.34	4.3	95.7	0.0	-0.28	1.22	0.62	0.80	1.62	10704	1364	1	0	0	0	0	logfile
✔	8FN0	29302	2024-02-14	2022-12-26	2.89	2.19	2.89	2.1	0.006	1.29	0.0	0.09	10.62	0.01	2.225	6.24	0.11	1.9	98.1	0.0	1.16	0.78	0.80	3.85	2.0	0.003	0.62	0.0	0.04	14.70	0.00	1.889	6.36	1.70	2.2	97.8	0.0	1.25	1.03	0.78	0.80	3.14	8502	1120	7	0	1	0	0	logfile

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