Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HPA	34929	2024-02-16	2022-12-12	3.01	3.41	3.24	3.4	0.002	0.55	0.0	0.04	15.99	0.00	2.144	9.19	0.00	9.3	90.0	0.7	-0.92	0.67	0.71	2.15	3.4	0.003	0.66	0.0	0.04	18.16	0.00	2.125	11.52	2.43	9.3	90.1	0.7	-1.04	1.41	0.66	0.76	2.35	14122	1648	5	33	0	0	0	logfile
✔	8FGW	29073	2024-02-24	2022-12-12	3.7	3.39	2.51	2.0	0.003	0.54	0.0	0.04	12.36	0.00	2.078	10.57	0.00	4.2	95.8	0.0	0.55	0.83	0.76	1.74	2.0	0.003	0.55	0.0	0.04	14.07	0.00	2.090	10.80	0.99	4.2	95.8	0.0	0.82	0.27	0.84	0.78	1.53	43527	5564	9	0	5	0	0	logfile
✔	8HPo	34935	2024-02-20	2022-12-12	2.6	2.84	2.69	3.0	0.008	0.98	13.0	0.06	19.27	0.01	1.346	14.56	11.26	6.4	93.2	0.4	-3.79	0.72	0.77	2.37	3.0	0.003	0.66	0.0	0.04	18.65	0.00	1.895	9.53	4.00	5.0	94.9	0.1	-0.24	0.56	0.71	0.78	2.23	27951	3571	13	0	6	0	0	logfile
✔	8HPS	34942	2024-02-15	2022-12-12	3.51	3.85	3.72	3.8	0.012	1.77	6.0	0.10	13.07	0.01	2.209	4.87	0.38	3.9	96.1	0.0	-1.71	0.65	0.81	2.79	3.8	0.003	0.66	0.0	0.04	15.23	0.00	1.984	8.81	2.60	3.2	96.8	0.0	0.71	1.11	0.65	0.82	1.58	12984	1722	8	0	6	0	0	logfile
✔	8HPN	34934	2024-02-15	2022-12-12	4.55	5.06	4.53	6.7	0.012	1.81	6.0	0.10	13.61	0.01	2.243	7.50	0.35	7.3	92.5	0.2	-2.64	0.72	0.80	—	4.6	0.003	0.70	0.0	0.04	12.41	0.00	2.165	12.13	0.09	4.2	95.7	0.1	0.14	0.87	0.72	0.80	—	12329	1707	8	0	4	0	0	logfile
✔	8BYA	16325	2024-02-14	2022-12-12	3.38	3.67	3.49	3.7	0.005	0.80	0.0	0.05	15.66	0.00	1.446	13.76	0.88	5.0	94.9	0.1	-1.67	0.69	0.73	1.25	3.7	0.003	0.62	0.0	0.04	16.31	0.00	2.152	8.97	3.51	6.5	93.5	0.0	-1.08	1.15	0.70	0.75	1.23	8389	1145	7	0	0	0	0	logfile
✔	8HPQ	34940	2024-02-13	2022-12-12	2.85	3.02	2.88	2.9	0.013	1.12	10.0	0.06	13.79	0.01	1.403	9.85	0.64	3.8	96.2	0.1	-0.06	0.52	0.38	1.59	2.9	0.004	0.79	3.0	0.05	15.70	0.01	2.115	12.29	1.66	3.4	96.6	0.0	0.08	1.18	0.69	0.75	2.16	44355	5745	18	0	3	0	0	logfile
✔	8HPM	34933	2024-02-15	2022-12-12	3.82	4.17	3.97	4.0	0.012	1.82	5.0	0.10	12.98	0.01	2.225	7.78	0.65	6.4	93.5	0.1	-2.52	0.67	0.78	1.71	4.0	0.003	0.77	0.0	0.04	14.78	0.00	2.127	12.50	2.35	4.6	95.4	0.0	-0.71	1.21	0.67	0.78	1.36	12803	1758	8	0	4	0	0	logfile
✔	8FFY	29070	2024-02-13	2022-12-11	3.6	3.59	3.60	3.8	0.008	0.72	0.0	0.05	19.05	0.00	2.125	4.09	0.00	0.3	99.7	0.0	-0.66	0.60	0.63	1.56	3.8	0.002	0.54	0.0	0.04	19.80	0.00	2.210	7.84	3.85	2.0	98.0	0.0	0.71	1.38	0.72	0.79	1.74	7442	770	5	61	2	0	0	logfile
✔	8HoY	34927	2024-02-15	2022-12-11	2.76	2.99	2.88	3.1	0.002	0.46	0.0	0.04	13.25	0.00	2.189	9.49	0.00	7.4	92.6	0.1	-0.64	0.51	0.54	0.86	3.0	0.003	0.72	0.0	0.05	16.49	0.01	2.065	15.38	2.95	8.9	90.9	0.1	-1.73	0.80	0.54	0.60	0.92	13454	1650	3	0	0	0	0	logfile
✔	8FFZ	29071	2024-02-23	2022-12-11	3.8	3.60	3.85	3.5	0.013	1.89	17.0	0.10	18.55	0.02	2.526	0.36	0.38	5.5	94.4	0.1	-1.13	0.69	0.69	2.51	3.4	0.003	0.63	0.0	0.04	20.52	0.00	2.108	9.64	1.61	4.0	96.0	0.0	0.34	0.68	0.68	0.68	1.76	38962	4045	11	302	9	0	0	logfile
✔	8BY2	16319	2024-02-17	2022-12-11	3.18	3.61	3.24	3.6	0.003	0.54	0.0	0.03	19.61	0.00	2.211	4.78	0.00	5.0	95.0	0.0	1.83	0.62	0.83	0.69	3.6	0.002	0.53	0.0	0.03	18.80	0.00	2.199	6.21	2.30	5.1	94.9	0.0	1.16	0.26	0.59	0.82	0.67	17356	1094	4	0	8	0	8802	logfile
✔	8FFW	29069	2024-02-21	2022-12-10	3.23	4.02	3.29	3.7	0.024	1.95	1.0	0.10	11.36	0.02	1.820	1.30	0.00	1.4	98.5	0.1	0.37	0.86	0.79	2.39	3.6	0.004	0.64	0.0	0.04	13.32	0.00	1.680	7.13	0.75	3.8	96.2	0.0	0.11	3.43	0.86	0.79	2.12	31497	1939	7	0	5	0	15742	logfile
✔	8FFV	29068	2024-02-21	2022-12-10	3.01	3.71	3.03	3.3	0.023	1.85	1.0	0.10	11.22	0.02	1.804	1.07	0.00	1.2	98.7	0.1	0.64	0.88	0.86	2.83	3.3	0.003	0.59	0.0	0.04	12.84	0.00	1.826	5.62	0.29	2.5	97.5	0.0	0.37	1.09	0.86	0.84	2.57	31631	1942	7	0	5	0	15804	logfile
✔	8Ho7	34921	2024-02-15	2022-12-09	2.59	2.93	2.60	2.9	0.002	0.53	0.0	0.04	17.79	0.00	2.118	4.39	2.31	3.6	96.4	0.0	0.25	0.71	0.91	5.15	2.9	0.003	0.55	0.0	0.04	17.82	0.00	2.139	4.86	2.31	3.4	96.6	0.0	0.35	0.15	0.64	0.88	5.09	13227	1620	4	0	0	112	0	logfile
✔	8Ho9	34923	2024-02-15	2022-12-09	2.25	2.64	2.25	2.6	0.009	0.69	2.0	0.06	17.35	0.00	1.947	2.88	1.23	3.6	96.4	0.0	0.41	0.68	0.86	5.45	2.6	0.004	0.59	0.0	0.05	17.44	0.00	2.164	3.23	1.45	3.6	96.4	0.0	0.56	0.19	0.75	0.90	5.51	13463	1622	4	0	0	347	0	logfile
✔	8FFL	29046	2024-02-17	2022-12-09	3.47	3.31	3.44	3.4	0.002	0.49	0.0	0.03	14.39	0.00	2.199	3.88	0.14	1.1	98.9	0.0	1.72	0.70	0.86	3.45	3.4	0.003	0.46	0.0	0.04	15.27	0.00	2.165	4.46	1.19	1.7	98.3	0.0	1.70	0.24	0.70	0.86	2.98	19683	2426	8	0	4	0	0	logfile
✔	8Ho8	34922	2024-02-15	2022-12-09	2.24	2.63	2.22	2.6	0.003	0.59	0.0	0.05	17.23	0.00	2.278	2.79	1.30	3.3	96.7	0.0	0.44	0.73	0.89	5.92	2.6	0.003	0.59	0.0	0.05	17.28	0.00	2.232	2.83	2.10	3.4	96.6	0.0	0.57	0.14	0.77	0.90	5.66	13454	1618	6	0	4	309	0	logfile
✔	8HNU	34918	2024-02-16	2022-12-08	2.28	2.97	2.29	2.7	0.003	0.45	0.0	0.04	16.20	0.00	2.170	3.11	1.52	2.0	97.9	0.1	1.07	0.85	0.90	4.54	2.7	0.005	0.71	2.0	0.05	16.18	0.00	1.964	3.56	0.58	2.4	97.5	0.1	0.93	0.12	0.85	0.91	4.77	16178	1970	6	0	4	316	0	logfile
✔	8HNM	34916	2024-02-14	2022-12-08	2.94	3.31	2.90	3.2	0.007	0.69	0.0	0.23	15.92	0.00	2.223	8.44	0.53	5.0	95.0	0.0	0.38	0.75	0.86	2.12	3.2	0.005	0.79	0.0	0.17	16.81	0.00	2.115	6.84	3.61	6.1	93.9	0.0	0.37	0.30	0.77	0.88	2.34	8784	1117	6	0	3	0	0	logfile

• ← previous
• Page 96 of 588
• next →