Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BiS	44600	2025-02-13	2024-04-24	3.2	3.55	3.16	3.4	0.004	0.78	0.0	0.04	18.67	0.00	1.376	7.08	0.40	8.7	91.3	0.0	0.07	0.59	0.82	2.90	3.4	0.003	0.56	0.0	0.04	18.21	0.00	2.292	5.18	1.80	7.0	93.0	0.0	0.89	0.79	0.61	0.84	3.06	9444	595	3	0	1	0	4734	logfile
✔	9BiM	44593	2025-02-11	2024-04-23	3.67	3.99	3.69	4.0	0.004	0.75	0.0	0.04	13.02	0.01	2.259	4.86	0.00	2.9	97.1	0.0	0.00	0.55	0.80	1.98	4.0	0.003	0.58	0.0	0.04	13.70	0.00	2.635	6.23	1.45	2.7	97.3	0.0	1.78	0.33	0.60	0.82	1.38	3992	516	2	0	1	0	0	logfile
✔	9BiA	44585	2025-02-14	2024-04-23	3.0	3.28	3.03	3.3	0.003	0.60	0.0	0.04	13.72	0.00	2.333	1.44	0.00	1.8	98.2	0.0	0.99	0.44	0.77	3.80	3.3	0.003	0.50	0.0	0.04	15.97	0.00	2.412	4.03	1.08	0.9	98.9	0.2	3.44	0.66	0.51	0.82	2.92	10430	672	6	0	0	0	5263	logfile
✔	9Bi9	44577	2025-02-12	2024-04-23	2.61	3.67	2.64	3.4	0.003	0.53	0.0	0.04	12.52	0.00	2.243	5.09	0.00	4.4	95.6	0.0	0.82	0.72	0.75	3.46	3.4	0.004	0.62	0.0	0.04	14.90	0.01	2.378	5.10	0.96	4.0	96.0	0.0	0.53	2.17	0.75	0.79	2.50	7578	497	2	0	1	0	3712	logfile
✔	9BHX	44556	2025-02-13	2024-04-22	3.94	4.14	3.93	4.1	0.013	1.34	0.0	0.05	17.52	0.01	1.661	20.33	0.44	6.7	92.8	0.5	-1.38	0.72	0.75	1.79	4.1	0.004	0.75	0.0	0.04	18.07	0.01	2.473	11.68	4.98	7.9	91.9	0.2	-1.28	0.56	0.73	0.76	1.62	8376	1048	1	0	0	0	0	logfile
✔	9BHW	44555	2025-02-13	2024-04-22	2.72	3.56	2.84	3.3	0.005	0.72	0.0	0.05	14.14	0.00	2.158	6.79	0.31	2.0	98.0	0.0	0.77	0.85	0.86	4.93	3.3	0.004	0.63	0.0	0.04	15.95	0.00	2.464	5.02	1.13	2.4	97.6	0.0	1.94	0.67	0.79	0.85	4.16	8759	1071	8	4	0	0	0	logfile
✔	8Z80	39834	2025-02-10	2024-04-21	3.7	3.78	3.71	3.7	0.004	0.74	0.0	0.04	13.05	0.01	2.251	10.35	0.00	5.5	94.5	0.0	0.64	0.35	0.55	0.99	3.8	0.003	0.69	0.0	0.04	15.84	0.00	2.570	10.71	2.29	4.2	95.8	0.0	0.69	1.07	0.35	0.57	0.99	2828	389	2	0	1	0	0	logfile
✔	8Z7R	39825	2025-02-10	2024-04-21	3.15	3.31	3.10	3.4	0.005	0.77	0.0	0.04	16.63	0.01	2.214	9.16	0.60	3.9	96.1	0.0	-0.35	0.53	0.79	2.54	3.4	0.004	0.68	0.0	0.04	16.63	0.00	2.595	9.96	4.20	2.9	97.1	0.0	1.64	0.41	0.57	0.81	1.81	3098	387	1	0	0	0	0	logfile
✔	8Z7T	39827	2025-02-10	2024-04-21	3.39	3.55	3.23	3.6	0.003	0.62	0.0	0.04	16.89	0.01	2.208	10.57	0.60	3.4	96.6	0.0	0.43	0.56	0.82	1.51	3.6	0.003	0.67	0.0	0.04	17.16	0.00	2.582	8.17	2.70	1.3	98.7	0.0	1.78	0.43	0.57	0.82	1.68	3110	387	2	0	1	0	0	logfile
✔	8Z7X	39831	2025-02-10	2024-04-21	3.36	3.51	3.34	3.5	0.006	0.80	0.0	0.05	13.91	0.00	2.198	8.66	0.00	4.0	96.0	0.0	-0.59	0.52	0.70	1.15	3.5	0.004	0.65	0.0	0.04	15.66	0.00	2.560	10.19	2.28	4.0	96.0	0.0	0.53	0.99	0.51	0.72	0.43	2955	376	2	0	1	0	0	logfile
✔	8Z7S	39826	2025-02-10	2024-04-21	3.05	3.26	2.92	3.3	0.004	0.56	0.0	0.04	16.81	0.01	2.234	8.47	0.30	2.9	97.1	0.0	0.35	0.59	0.83	1.68	3.3	0.003	0.60	0.0	0.04	16.94	0.00	2.589	8.95	3.30	2.1	97.9	0.0	2.73	0.43	0.58	0.83	2.11	3116	387	2	0	1	0	0	logfile
✔	8Z7Z	39833	2025-02-10	2024-04-21	3.23	3.39	3.23	3.4	0.005	0.71	0.0	0.04	13.23	0.00	2.169	7.79	0.00	3.1	96.9	0.0	0.75	0.46	0.63	1.41	3.4	0.004	0.66	0.0	0.04	15.62	0.01	2.544	12.50	1.91	3.4	96.6	0.0	1.43	1.11	0.47	0.67	-0.21	2834	389	2	0	1	0	0	logfile
✔	8Z7U	39828	2025-02-10	2024-04-21	3.1	3.31	3.03	3.3	0.014	0.90	1.0	0.05	19.01	0.01	2.218	15.72	0.90	3.1	96.9	0.0	-0.32	0.58	0.82	2.48	3.3	0.004	0.66	0.0	0.04	17.48	0.00	2.592	8.26	3.00	1.3	98.7	0.0	1.95	1.05	0.54	0.80	3.05	3135	387	2	0	1	0	0	logfile
✔	9BHM	44550	2025-02-14	2024-04-21	2.9	3.15	2.84	3.1	0.008	0.65	0.0	0.04	14.74	0.00	2.165	10.17	0.13	2.9	97.1	0.0	-0.56	0.50	0.68	1.61	3.1	0.003	0.67	0.0	0.04	16.62	0.00	2.468	10.73	3.10	2.3	97.7	0.0	-0.28	1.02	0.56	0.73	1.56	7150	890	5	0	1	0	0	logfile
✔	8Z7G	39813	2025-02-14	2024-04-20	3.06	2.65	3.17	1.3	0.003	0.41	0.0	0.04	9.13	0.00	2.270	4.24	2.72	2.6	97.4	0.0	-0.26	0.90	0.85	2.66	1.3	0.006	0.96	1.0	0.05	12.95	0.00	2.064	11.06	1.63	5.2	94.7	0.1	1.01	0.66	0.91	0.88	2.35	10362	1329	6	0	18	0	0	logfile
✔	8Z7L	39819	2025-02-11	2024-04-20	3.42	2.85	3.35	1.4	0.002	0.45	0.0	0.04	8.76	0.00	2.324	6.07	4.12	4.9	95.1	0.0	-2.92	0.86	0.86	3.47	1.4	0.004	0.69	0.0	0.05	13.26	0.00	2.397	7.42	4.38	5.0	95.0	0.0	-1.21	0.67	0.87	0.90	3.32	6774	843	9	0	12	0	0	logfile
✔	8Z6T	39804	2025-02-11	2024-04-19	2.92	2.31	2.90	2.1	0.005	0.63	0.0	0.05	8.85	0.00	2.196	4.27	3.78	5.3	94.4	0.4	-2.88	0.61	0.74	3.34	2.1	0.004	0.70	0.0	0.05	13.39	0.00	2.569	7.19	4.18	6.2	93.8	0.0	-0.41	0.62	0.63	0.79	3.01	4526	589	3	0	0	0	0	logfile
✔	8Z7B	39811	2025-02-14	2024-04-19	3.3	2.94	3.27	1.4	0.003	0.47	0.0	0.04	13.47	0.00	2.279	5.18	2.96	2.9	97.1	0.0	-2.05	0.93	0.88	3.76	1.4	0.004	0.73	0.0	0.05	13.64	0.00	2.497	6.67	2.66	4.2	95.8	0.0	-0.04	1.96	0.95	0.92	3.22	9580	1145	13	0	24	0	0	logfile
✔	9BHB	44539	2025-02-10	2024-04-19	3.1	3.25	2.99	3.3	0.006	0.81	0.0	0.05	13.80	0.01	2.274	5.99	0.35	6.6	93.4	0.0	-2.11	0.60	0.83	4.31	3.3	0.004	0.59	0.0	0.04	15.08	0.00	2.533	7.72	3.52	5.1	94.9	0.0	0.51	0.81	0.59	0.84	3.98	2626	328	3	0	0	0	0	logfile
✔	8Z74	39810	2025-02-11	2024-04-19	3.01	2.28	3.02	2.1	0.003	0.63	0.0	0.04	14.94	0.00	2.235	13.45	0.00	3.9	96.1	0.0	0.52	0.73	0.74	2.84	2.1	0.003	0.64	0.0	0.04	15.17	0.00	2.558	10.41	2.78	3.2	96.8	0.0	0.52	0.27	0.71	0.73	2.95	6709	847	5	0	2	0	0	logfile

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