Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9BCP	44433	2025-02-11	2024-04-09	4.1	4.20	4.12	4.2	0.006	1.10	1.0	0.05	15.68	0.01	2.251	7.55	0.35	8.7	91.3	0.0	-2.81	0.70	0.75	—	4.2	0.003	0.66	0.0	0.04	14.44	0.00	2.359	4.05	0.35	7.4	92.6	0.0	-0.90	0.58	0.70	0.76	—	4162	618	5	0	2	1	0	logfile
✔	9BCV	44440	2025-02-12	2024-04-09	3.2	3.43	3.23	3.4	0.003	0.86	0.0	0.04	15.57	0.00	1.994	2.45	0.64	1.9	98.1	0.0	-0.32	0.64	0.79	2.82	3.4	0.002	0.61	0.0	0.03	14.87	0.00	2.028	2.02	6.11	1.7	98.3	0.0	-0.28	0.25	0.64	0.79	3.21	7729	422	12	0	907	0	0	logfile
✔	9EYJ	50055	2025-02-11	2024-04-09	2.97	3.34	2.92	3.2	0.004	0.59	1.0	0.04	16.13	0.00	1.569	13.32	2.14	4.8	95.2	0.0	-0.70	0.70	0.72	2.62	3.2	0.004	0.61	0.0	0.04	16.46	0.00	2.575	11.48	3.48	4.8	95.2	0.0	-0.54	0.39	0.70	0.72	2.77	4334	576	3	4	0	0	0	logfile
✔	9BCN	44431	2025-02-11	2024-04-09	2.9	3.16	2.99	3.2	0.006	0.81	2.0	0.06	15.34	0.01	2.156	3.80	0.96	3.7	96.3	0.0	-0.99	0.72	0.85	4.67	3.2	0.002	0.64	0.0	0.04	15.76	0.00	2.570	3.03	1.28	1.9	98.1	0.0	0.76	1.14	0.68	0.83	3.62	6606	850	8	0	16	0	0	logfile
✔	8YZK	39696	2025-02-11	2024-04-07	3.4	2.39	3.43	1.7	0.003	0.76	0.0	0.04	18.28	0.01	2.181	13.45	1.07	8.9	91.1	0.0	-1.21	0.68	0.59	0.53	1.6	0.004	0.76	0.0	0.04	18.29	0.00	2.463	16.15	6.13	9.5	90.5	0.0	-1.02	0.90	0.69	0.63	0.38	6470	866	4	0	0	0	0	logfile
✔	9BBL	44421	2025-02-14	2024-04-06	2.5	2.33	2.51	2.6	0.011	2.11	2.0	0.10	10.02	0.01	2.489	0.19	0.00	9.7	88.9	1.4	-2.48	0.27	0.65	5.75	2.6	0.005	0.70	0.0	0.05	16.94	0.00	2.430	3.27	0.85	8.8	91.2	0.0	-3.01	2.35	0.39	0.83	5.45	10395	666	9	0	0	0	5301	logfile
✔	9BBM	44422	2025-02-12	2024-04-06	3.2	3.01	3.08	3.2	0.012	2.05	4.0	0.11	13.73	0.01	2.513	0.00	0.51	12.7	82.4	4.9	-3.91	0.33	0.62	3.86	3.2	0.003	0.67	0.0	0.05	16.57	0.00	2.378	5.75	1.03	9.5	89.6	0.9	-3.34	1.32	0.35	0.73	4.18	6966	444	6	0	0	0	3558	logfile
✔	8YZB	39688	2025-02-11	2024-04-06	3.29	3.29	3.38	1.8	0.003	0.54	1.0	0.04	7.28	0.00	2.242	2.62	1.43	2.2	97.8	0.0	-0.85	0.86	0.81	2.16	1.4	0.003	0.75	0.0	0.05	13.64	0.00	2.265	3.65	1.72	3.4	96.6	0.0	0.49	1.59	0.90	0.90	2.64	6448	792	2	0	0	0	0	logfile
✔	9EWY	50026	2025-02-11	2024-04-05	3.1	2.60	3.13	3.2	0.004	0.53	0.0	0.04	15.97	0.00	2.208	3.47	0.00	1.9	98.0	0.1	2.61	0.69	0.87	2.95	3.1	0.003	0.48	0.0	0.04	17.04	0.00	2.573	3.55	1.62	1.6	98.3	0.1	2.57	0.28	0.68	0.88	2.75	6496	815	2	0	3	0	0	logfile
✔	9BBC	44417	2025-02-13	2024-04-05	3.3	4.25	3.36	3.7	0.003	0.92	0.0	0.05	15.19	0.00	2.206	13.57	0.56	3.7	96.2	0.1	0.51	0.81	0.82	2.28	3.8	0.004	0.88	0.0	0.05	15.57	0.00	2.450	11.40	3.37	4.6	95.3	0.1	0.25	1.19	0.82	0.83	1.95	8440	1052	16	0	20	0	0	logfile
✔	9BAZ	44415	2025-02-12	2024-04-05	2.76	3.45	2.80	3.3	0.004	0.63	0.0	0.04	16.56	0.00	2.117	12.04	0.50	3.2	96.8	0.0	0.19	0.71	0.71	2.69	3.3	0.004	0.67	0.0	0.04	16.88	0.00	2.426	9.84	4.15	3.6	96.4	0.0	0.19	0.29	0.72	0.72	2.60	8283	1090	5	0	1	0	0	logfile
✔	9BAP	44410	2025-02-11	2024-04-04	2.88	3.32	2.89	3.3	0.003	0.58	0.0	0.04	15.77	0.00	2.159	9.48	0.84	3.3	96.7	0.0	-0.35	0.61	0.67	2.09	3.3	0.003	0.64	0.0	0.04	16.23	0.00	2.537	7.07	4.53	2.9	97.1	0.0	-0.07	0.32	0.62	0.68	1.65	6535	887	3	0	1	0	0	logfile
✔	8YY1	39663	2025-02-13	2024-04-03	3.6	3.97	3.61	3.5	0.003	0.56	0.0	0.04	4.69	0.01	2.275	4.11	0.00	5.8	94.2	0.0	2.17	0.63	0.39	—	2.5	0.003	0.60	0.0	0.04	4.46	0.01	2.593	1.77	0.00	5.3	94.7	0.0	2.41	1.74	0.67	0.72	—	9097	1845	14	0	0	0	0	logfile
✔	9BAA	44402	2025-02-12	2024-04-03	3.39	3.77	3.55	3.7	0.004	0.63	0.0	0.04	14.98	0.00	2.231	9.22	0.12	8.1	91.7	0.2	1.06	0.63	0.81	1.62	3.7	0.004	0.96	1.0	0.04	16.68	0.00	2.256	10.28	2.47	8.3	91.4	0.3	1.76	0.34	0.61	0.81	1.23	7771	994	2	0	0	0	0	logfile
✔	9BA5	44396	2025-02-13	2024-04-03	3.51	2.38	3.57	3.6	0.011	1.26	2.0	0.07	12.94	0.01	2.389	2.35	0.00	5.3	94.7	0.0	-1.42	0.61	0.60	1.98	3.6	0.005	0.65	0.0	0.04	14.56	0.00	2.563	8.51	1.66	3.2	96.8	0.0	-0.23	1.16	0.65	0.62	1.61	9012	1146	4	0	10	0	0	logfile
✔	9B9Y	44392	2025-02-11	2024-04-03	3.5	3.81	3.47	3.6	0.006	1.16	0.0	0.05	14.20	0.01	2.288	4.18	0.20	3.0	97.0	0.0	0.65	0.74	0.84	1.97	3.6	0.003	0.69	0.0	0.04	16.03	0.00	2.521	6.06	3.93	2.7	97.3	0.0	1.71	1.57	0.74	0.85	2.13	4753	601	3	0	1	0	0	logfile
✔	9B9R	44389	2025-02-12	2024-04-03	3.7	4.67	3.13	4.1	0.002	0.68	0.0	0.04	11.04	0.00	2.150	2.60	0.00	0.9	99.1	0.0	0.53	0.69	0.69	0.82	4.2	0.003	0.69	0.0	0.04	15.75	0.00	2.278	8.52	1.56	1.6	98.4	0.0	1.42	1.43	0.71	0.76	1.47	6928	444	4	0	0	0	3436	logfile
✔	8YWX	39646	2025-02-11	2024-04-01	3.4	3.68	3.38	3.6	0.009	2.56	46.0	0.13	13.58	0.01	1.898	22.95	2.43	3.4	96.6	0.0	-1.55	0.67	0.73	2.13	3.6	0.005	0.84	0.0	0.05	15.08	0.01	2.295	9.84	3.18	6.0	94.0	0.0	-1.52	0.74	0.69	0.76	1.30	4803	623	3	0	0	0	0	logfile
✔	9B91	44365	2025-02-12	2024-04-01	3.3	4.21	3.19	3.7	0.005	0.50	0.0	0.04	11.38	0.00	2.119	6.47	0.28	3.9	96.1	0.0	1.45	0.60	0.83	2.44	3.8	0.004	0.58	0.0	0.04	13.74	0.00	2.289	6.68	2.76	3.5	96.5	0.0	2.14	0.61	0.60	0.86	2.17	7511	993	2	0	3	0	0	logfile
✔	9B8X	44361	2025-02-12	2024-04-01	3.0	3.73	2.92	3.4	0.002	0.42	0.0	0.03	9.22	0.00	2.325	4.87	0.40	2.8	97.2	0.0	2.41	0.60	0.86	2.62	3.4	0.002	0.49	0.0	0.04	12.43	0.00	2.355	3.94	0.54	2.8	97.2	0.0	2.47	0.98	0.61	0.88	2.70	7564	993	2	0	2	0	0	logfile

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