Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9GYo	51700	2025-02-12	2024-10-02	2.5	2.39	2.45	2.5	0.007	1.20	0.0	0.06	14.41	0.01	2.139	1.55	0.71	2.9	97.1	0.0	-1.22	0.67	0.89	5.17	2.5	0.003	0.60	0.0	0.04	15.81	0.00	2.577	3.71	1.89	2.0	98.0	0.0	1.60	0.84	0.67	0.89	4.44	8087	1028	6	0	4	0	0	logfile
✔	9JSU	61783	2025-02-11	2024-10-01	1.79	2.07	1.34	1.9	0.012	1.70	0.0	0.07	11.86	0.01	2.673	0.50	0.00	2.8	97.2	0.0	-2.92	0.29	0.70	9.20	2.0	0.003	0.55	0.0	0.05	13.91	0.00	2.696	1.25	0.00	2.8	97.2	0.0	-3.10	1.17	0.52	0.92	8.57	4040	264	8	0	0	0	2000	logfile
✔	9JST	61782	2025-02-11	2024-10-01	1.79	1.95	1.31	1.9	0.012	1.74	0.0	0.08	10.67	0.01	2.662	1.17	0.00	4.9	94.7	0.4	-1.74	0.44	0.90	8.24	1.9	0.003	0.57	0.0	0.05	12.46	0.00	2.554	0.23	1.85	5.3	94.7	0.0	-1.67	0.73	0.46	0.93	7.15	4304	280	8	0	0	0	2128	logfile
✔	9JSV	61784	2025-02-11	2024-10-01	1.79	2.00	1.27	1.9	0.013	1.78	0.0	0.08	11.54	0.01	2.696	1.18	1.39	5.5	94.5	0.0	-0.87	0.25	0.69	8.64	1.9	0.003	0.50	0.0	0.05	12.20	0.00	2.651	2.60	0.00	4.3	95.7	0.0	-0.94	0.61	0.49	0.93	8.50	4248	272	8	0	0	0	2104	logfile
✔	9JSW	61785	2025-02-11	2024-10-01	1.94	1.98	1.45	2.0	0.012	1.76	0.0	0.08	11.15	0.01	2.664	2.34	0.00	5.3	94.7	0.0	-2.00	0.43	0.88	7.60	2.0	0.003	0.63	0.0	0.05	13.96	0.01	2.490	0.23	0.46	4.5	95.5	0.0	-1.91	1.48	0.45	0.90	7.25	4304	280	8	0	0	0	2128	logfile
✔	9JSX	61786	2025-02-11	2024-10-01	1.79	1.84	1.32	1.8	0.014	1.88	3.0	0.10	11.58	0.01	2.548	0.24	1.85	5.9	94.1	0.0	-0.91	0.22	0.58	8.50	1.8	0.003	0.53	0.0	0.05	12.47	0.00	2.679	4.26	0.00	5.5	94.5	0.0	-1.31	0.77	0.52	0.90	7.61	4248	272	8	0	0	0	2104	logfile
✔	9DTT	47165	2025-02-12	2024-10-01	3.6	3.95	3.74	3.7	0.002	0.49	0.0	0.04	18.76	0.00	2.136	10.36	0.00	4.8	95.2	0.0	-0.66	0.53	0.40	0.55	3.8	0.002	0.64	0.0	0.04	20.55	0.00	2.375	12.45	2.17	5.8	94.1	0.1	-1.32	1.02	0.55	0.42	0.68	8274	850	3	67	2	0	0	logfile
✔	9JS4	61766	2025-02-10	2024-09-30	3.8	3.94	3.72	3.9	0.002	0.62	0.0	0.04	12.56	0.01	2.286	6.45	0.00	4.6	95.4	0.0	-1.81	0.59	0.71	2.33	3.9	0.003	0.67	0.0	0.04	14.94	0.00	2.481	6.92	2.82	5.6	94.4	0.0	-1.84	0.33	0.60	0.72	2.20	3244	417	3	0	0	0	0	logfile
✔	9DTG	47155	2025-02-12	2024-09-30	3.83	4.14	3.79	4.1	0.003	0.65	0.0	0.04	14.39	0.00	2.199	7.26	0.79	9.2	90.6	0.2	-3.94	0.70	0.75	1.58	4.1	0.002	0.60	0.0	0.04	15.65	0.00	2.520	5.57	3.49	10.0	89.9	0.1	-3.38	1.01	0.70	0.79	1.45	8069	1023	2	0	0	0	0	logfile
✔	9JR3	61747	2025-02-13	2024-09-29	2.8	2.91	—	2.9	0.003	0.49	0.0	0.04	13.98	0.00	2.136	3.69	0.62	2.3	97.6	0.1	0.36	0.27	0.63	2.72	2.9	0.003	0.61	0.0	0.04	15.64	0.00	2.514	7.37	3.64	2.8	97.1	0.1	0.91	0.90	0.49	0.76	2.30	9455	1228	9	0	3	1	0	logfile
✔	9JR2	61746	2025-02-13	2024-09-29	2.8	2.91	—	3.0	0.003	0.51	0.0	0.04	14.04	0.00	2.142	3.21	0.31	2.8	97.2	0.0	0.54	0.26	0.61	3.01	2.9	0.006	0.67	0.0	0.04	15.81	0.00	2.505	8.05	3.43	4.3	95.7	0.0	0.77	0.64	0.50	0.77	2.62	9418	1225	8	0	1	1	0	logfile
✔	9GXA	51645	2025-02-13	2024-09-29	4.01	4.77	4.07	4.0	0.004	0.65	0.0	0.04	29.32	0.00	1.931	15.93	0.00	1.6	98.4	0.0	1.51	0.85	0.76	—	4.0	0.005	0.72	0.0	0.04	30.06	0.00	2.345	16.41	0.00	2.3	97.7	0.0	1.28	1.07	0.88	0.85	—	9215	574	10	224	0	0	0	logfile
✔	9JQT	61741	2025-02-11	2024-09-28	2.7	3.06	2.80	3.1	0.005	0.72	0.0	0.05	13.51	0.01	2.209	8.55	0.31	2.0	98.0	0.0	0.51	0.41	0.62	3.55	3.0	0.004	0.57	0.0	0.04	15.04	0.00	2.610	7.11	3.15	2.1	97.9	0.0	0.70	0.31	0.55	0.79	3.34	5669	720	4	0	0	0	0	logfile
✔	9GVK	51637	2025-02-13	2024-09-25	3.5	3.08	3.16	3.2	0.004	0.71	0.0	0.05	18.62	0.00	2.026	8.11	0.39	5.7	94.3	0.0	-0.64	0.72	0.83	1.37	3.2	0.003	0.62	0.0	0.04	18.36	0.00	2.013	8.21	2.91	6.2	93.8	0.0	0.02	1.06	0.71	0.81	1.35	9673	1256	6	0	4	0	0	logfile
✔	9DNG	47040	2025-02-11	2024-09-17	3.52	2.45	3.47	2.0	0.003	0.63	0.0	0.04	16.58	0.00	2.221	7.46	0.35	6.1	93.9	0.0	-0.93	0.71	0.71	2.28	2.0	0.005	0.69	0.0	0.05	17.13	0.00	2.508	6.79	2.98	6.5	93.5	0.0	-0.63	0.33	0.71	0.71	1.99	5252	675	3	0	0	0	0	logfile
✔	9DNM	47042	2025-02-11	2024-09-17	3.47	2.46	3.46	2.1	0.004	0.63	0.0	0.04	16.43	0.01	2.222	7.96	0.18	4.7	95.3	0.0	-0.32	0.74	0.75	2.76	2.1	0.004	0.64	0.0	0.04	16.37	0.01	2.482	5.37	2.64	5.0	95.0	0.0	0.32	0.34	0.74	0.77	2.47	5235	668	4	0	1	0	0	logfile
✔	9DMY	47020	2025-02-11	2024-09-16	2.8	2.57	2.74	2.5	0.002	0.48	0.0	0.05	13.08	0.00	2.331	10.31	0.00	1.5	98.5	0.0	-3.48	0.44	0.78	3.76	2.5	0.004	0.72	0.0	0.05	18.11	0.00	2.634	14.68	3.08	6.5	93.5	0.0	-4.18	1.35	0.45	0.80	3.27	5550	690	5	0	0	0	0	logfile
✔	9JKQ	61567	2025-02-12	2024-09-16	2.66	2.84	2.68	2.9	0.003	0.53	0.0	0.04	13.25	0.00	2.097	5.82	0.00	2.9	97.1	0.0	0.84	0.67	0.82	3.46	2.9	0.002	0.52	0.0	0.04	15.84	0.00	2.561	4.74	2.08	2.6	97.4	0.0	1.24	1.24	0.66	0.84	2.85	8386	1055	6	0	1	0	0	logfile
✔	9DMZ	47021	2025-02-11	2024-09-16	2.8	2.58	2.73	2.5	0.003	0.60	0.0	0.06	13.01	0.00	2.275	10.79	0.00	1.5	98.5	0.0	-3.51	0.43	0.77	3.82	2.5	0.004	0.73	0.0	0.06	17.65	0.00	2.602	14.51	2.05	6.3	93.7	0.0	-4.18	1.36	0.46	0.80	3.37	5690	690	10	0	10	0	0	logfile
✔	9JKB	61550	2025-02-14	2024-09-15	3.93	4.21	3.97	4.1	0.003	0.67	0.0	0.04	15.64	0.01	2.253	7.81	0.19	4.6	95.4	0.0	-0.64	0.78	0.81	0.96	4.1	0.004	0.71	0.0	0.04	17.54	0.00	2.523	13.61	2.56	4.2	95.8	0.0	0.45	1.03	0.78	0.80	1.08	9532	1179	5	0	0	0	0	logfile

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