Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9D6F	46596	2025-02-11	2024-08-15	4.24	4.50	4.14	4.4	0.004	0.92	0.0	0.05	13.89	0.01	2.215	5.46	0.00	8.4	91.2	0.3	-2.08	0.68	0.76	—	4.4	0.004	0.73	0.0	0.04	14.20	0.00	2.546	7.54	0.00	9.8	90.2	0.0	-2.05	0.48	0.69	0.78	—	4672	610	5	0	0	0	0	logfile
✔	9D66	46586	2025-02-13	2024-08-14	2.98	3.18	2.93	3.2	0.004	0.68	0.0	0.04	13.81	0.00	2.055	3.35	0.00	1.8	98.2	0.0	-1.67	0.58	0.79	3.71	3.2	0.003	0.55	0.0	0.04	15.41	0.00	2.196	7.32	2.56	1.0	99.0	0.0	1.88	0.53	0.64	0.82	2.37	9306	1221	10	0	12	12	0	logfile
✔	9D6A	46591	2025-02-10	2024-08-14	2.6	2.76	2.62	2.8	0.003	0.48	0.0	0.04	15.56	0.00	2.057	3.14	0.00	1.8	98.2	0.0	1.00	0.51	0.87	3.86	2.8	0.003	0.51	0.0	0.04	16.54	0.00	2.183	6.12	1.18	1.5	98.5	0.0	2.06	0.34	0.49	0.86	2.95	3105	407	3	0	4	9	0	logfile
✔	9D61	46585	2025-02-12	2024-08-14	3.58	3.05	—	3.8	0.004	0.74	0.0	0.05	12.93	0.00	2.249	5.72	0.00	6.7	93.3	0.0	-1.57	0.67	0.63	0.77	3.8	0.003	0.79	0.0	0.04	16.34	0.00	2.506	13.57	2.62	5.9	94.1	0.0	-0.54	0.91	0.68	0.66	0.85	6895	903	5	0	1	0	0	logfile
✔	9D67	46588	2025-02-13	2024-08-14	2.87	3.10	1.45	3.2	0.003	0.60	0.0	0.04	16.10	0.01	2.143	4.81	0.00	2.1	97.9	0.0	0.93	0.52	0.74	2.24	3.2	0.003	0.58	0.0	0.04	16.23	0.00	2.173	8.67	2.08	1.3	98.7	0.0	1.72	1.18	0.64	0.81	2.62	9297	1218	9	0	15	3	0	logfile
✔	9D68	46589	2025-02-10	2024-08-14	2.58	2.77	2.59	2.8	0.003	0.55	0.0	0.04	16.08	0.00	2.112	3.30	0.28	1.0	99.0	0.0	1.51	0.51	0.87	3.43	2.8	0.003	0.52	0.0	0.04	16.71	0.00	2.137	6.30	1.98	1.0	99.0	0.0	1.99	0.88	0.49	0.86	2.90	3242	426	3	0	2	6	0	logfile
✔	9D69	46590	2025-02-10	2024-08-14	2.99	3.21	3.06	3.3	0.003	0.55	0.0	0.04	15.99	0.01	2.096	3.87	0.00	1.7	98.3	0.0	0.78	0.46	0.84	3.65	3.2	0.003	0.60	0.0	0.04	16.70	0.00	2.274	6.96	1.74	2.0	98.0	0.0	2.13	0.94	0.43	0.82	2.51	3143	413	3	0	4	0	0	logfile
✔	9GG6	51325	2025-02-10	2024-08-13	3.36	3.18	3.07	3.3	0.003	0.71	0.0	0.05	15.58	0.00	2.386	4.80	0.00	6.4	93.6	0.0	-3.00	0.38	0.87	3.89	3.3	0.007	0.73	0.0	0.05	17.63	0.00	2.563	4.57	6.43	9.2	90.8	0.0	-2.26	0.54	0.39	0.89	4.21	2142	288	3	0	0	0	0	logfile
✔	9GG0	51319	2025-02-10	2024-08-12	2.81	2.88	2.40	2.9	0.008	1.41	0.0	0.09	14.69	0.01	2.615	1.63	0.00	7.6	92.4	0.0	-2.42	0.42	0.90	5.63	2.9	0.004	0.55	0.0	0.05	15.90	0.00	2.567	1.23	2.20	2.5	97.5	0.0	-2.13	0.33	0.39	0.88	5.78	2385	321	3	0	0	0	0	logfile
✔	9GG1	51320	2025-02-10	2024-08-12	2.26	2.29	2.15	2.2	0.008	1.28	0.0	0.08	14.09	0.01	2.610	1.51	0.00	5.7	94.3	0.0	-2.57	0.45	0.92	7.85	2.2	0.004	0.73	0.0	0.05	15.81	0.00	2.534	2.72	0.81	3.1	96.0	1.0	-2.31	0.91	0.46	0.92	7.14	3232	428	4	0	0	0	0	logfile
✔	9J52	61140	2025-02-11	2024-08-11	3.1	3.36	3.19	3.4	0.004	0.55	0.0	0.04	12.86	0.00	2.100	10.21	2.36	6.5	93.4	0.1	0.50	0.54	0.77	2.63	3.4	0.003	0.61	0.0	0.04	15.18	0.00	2.385	10.44	1.33	5.0	95.0	0.0	1.50	1.15	0.54	0.76	1.95	6593	764	4	0	5	0	0	logfile
✔	9J51	61139	2025-02-11	2024-08-11	3.1	3.34	3.13	3.4	0.003	0.55	0.0	0.04	14.55	0.00	2.092	9.85	2.66	5.2	94.8	0.0	0.40	0.53	0.75	2.04	3.4	0.003	0.63	0.0	0.04	16.05	0.00	2.422	11.06	2.81	5.4	94.6	0.0	0.55	1.14	0.53	0.75	2.08	6581	762	4	0	5	0	0	logfile
✔	9J4X	61138	2025-02-11	2024-08-10	2.9	3.08	2.89	3.1	0.003	0.52	0.0	0.04	12.98	0.00	2.140	7.96	1.33	4.6	95.4	0.0	0.84	0.60	0.83	3.05	3.1	0.004	0.56	0.0	0.04	15.54	0.00	2.590	7.36	1.47	4.4	95.6	0.0	1.55	0.33	0.61	0.83	2.20	6588	764	4	0	4	0	0	logfile
✔	9J2N	61099	2025-02-11	2024-08-07	3.3	3.54	3.29	3.6	0.006	0.81	0.0	0.04	16.62	0.01	2.233	13.33	0.00	4.9	95.1	0.0	0.45	0.65	0.86	2.03	3.5	0.003	0.60	0.0	0.04	15.57	0.00	2.573	7.28	1.06	3.4	96.6	0.0	1.34	0.76	0.63	0.88	1.54	3584	468	2	0	1	0	0	logfile
✔	9J31	61104	2025-02-13	2024-08-07	3.05	3.24	3.06	3.3	0.003	0.66	0.0	0.04	17.22	0.01	2.110	14.00	0.21	3.9	96.1	0.0	0.38	0.52	0.70	2.03	3.3	0.003	0.55	0.0	0.04	17.70	0.00	2.528	8.62	2.67	3.8	96.1	0.1	0.80	1.14	0.59	0.78	2.58	8994	1144	5	0	0	0	0	logfile
✔	9CZN	46422	2025-02-11	2024-08-05	2.6	2.70	2.56	2.7	0.020	1.90	0.0	0.12	13.57	0.01	2.563	0.00	0.00	4.7	95.3	0.0	-0.35	0.44	0.79	6.66	2.7	0.006	0.71	0.0	0.06	19.24	0.00	2.613	8.15	1.60	5.2	94.8	0.0	-1.20	3.21	0.56	0.88	5.45	5020	680	20	0	0	0	0	logfile
✔	9CZP	46424	2025-02-11	2024-08-05	3.3	3.59	3.27	3.5	0.021	2.01	0.0	0.11	10.68	0.01	2.402	0.40	0.00	7.0	93.0	0.0	-0.29	0.47	0.84	6.05	3.5	0.005	0.64	0.0	0.06	16.76	0.00	2.558	10.44	3.40	9.5	90.5	0.0	-1.43	1.61	0.42	0.84	4.71	5020	680	20	0	0	0	0	logfile
✔	9CZL	46420	2025-02-11	2024-08-05	2.9	3.25	2.64	3.2	0.023	1.95	0.0	0.09	9.53	0.01	2.463	0.52	0.00	5.6	94.4	0.0	-1.27	0.54	0.85	5.46	3.2	0.005	0.77	0.0	0.05	17.12	0.00	2.581	4.15	1.54	6.8	93.2	0.0	-1.73	1.67	0.45	0.84	5.31	5660	740	10	0	0	0	0	logfile
✔	9CZi	46417	2025-02-11	2024-08-05	3.0	3.03	2.88	3.0	0.021	1.92	0.0	0.10	9.10	0.01	2.435	0.79	0.00	7.0	93.0	0.0	-1.72	0.38	0.80	5.58	3.0	0.004	0.67	0.0	0.05	18.43	0.00	2.522	6.95	1.41	4.9	95.1	0.0	-2.15	1.28	0.47	0.87	4.72	5570	730	10	0	0	0	0	logfile
✔	9GCM	51234	2025-02-11	2024-08-02	3.1	3.68	3.12	3.3	0.004	0.65	0.0	0.03	20.80	0.01	2.142	16.26	0.93	3.2	96.2	0.5	-0.05	0.80	0.79	2.49	3.3	0.004	0.69	0.0	0.04	20.56	0.00	2.197	11.92	2.48	4.3	95.1	0.5	0.30	0.51	0.80	0.80	2.15	4466	377	4	66	0	0	0	logfile

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