Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GG4	29994	2025-02-11	2023-03-08	3.2	3.40	3.18	3.4	0.003	0.48	0.0	0.04	13.92	0.00	2.201	2.13	0.00	2.6	97.4	0.0	1.09	0.71	0.88	3.56	3.4	0.002	0.46	0.0	0.04	15.12	0.00	2.499	2.06	1.65	1.5	98.5	0.0	1.67	0.90	0.69	0.88	2.66	6764	896	6	0	2	4	0	logfile
✔	8GF7	29980	2025-02-11	2023-03-07	4.8	3.61	4.18	4.4	0.003	0.68	0.0	0.06	10.15	0.00	1.681	53.15	0.00	10.2	89.8	0.0	-4.11	0.33	0.53	—	4.4	0.004	1.09	0.0	0.06	14.25	0.00	2.235	20.67	0.00	18.2	81.8	0.0	-3.90	2.19	0.34	0.57	—	3774	540	12	0	6	0	0	logfile
✔	8CR1	16801	2025-02-13	2023-03-07	3.2	3.42	3.21	3.4	0.003	0.72	0.0	0.05	14.01	0.00	2.243	12.30	0.10	3.9	96.1	0.0	0.14	0.63	0.67	0.98	3.4	0.004	0.74	0.0	0.05	16.59	0.01	2.464	10.04	2.44	4.0	96.0	0.0	0.63	0.60	0.69	0.82	1.41	9205	1158	5	0	1	0	0	logfile
✔	8CR2	16802	2025-02-12	2023-03-07	4.2	4.42	4.19	5.1	0.004	1.07	1.0	0.06	13.24	0.01	1.914	20.12	0.00	5.8	94.2	0.0	-3.18	0.41	0.29	—	4.4	0.003	0.83	0.0	0.05	13.81	0.00	2.353	11.87	0.00	3.2	96.8	0.0	0.62	1.55	0.63	0.66	—	6838	855	5	0	1	0	0	logfile
✔	8CQR	16799	2025-02-14	2023-03-07	3.8	4.35	3.84	4.2	0.002	0.43	0.0	0.03	11.30	0.00	2.374	4.02	0.00	4.0	96.0	0.0	0.53	0.43	0.64	1.08	4.2	0.002	0.58	0.0	0.04	15.30	0.00	2.265	13.19	2.13	3.8	96.2	0.0	1.13	1.50	0.45	0.66	0.45	9708	618	6	0	0	0	5010	logfile
✔	8GE3	29954	2025-02-11	2023-03-06	3.3	3.68	3.44	3.6	0.003	0.48	0.0	0.04	12.03	0.00	2.229	5.84	0.00	1.6	98.4	0.0	1.74	0.70	0.84	3.43	3.6	0.003	0.51	0.0	0.04	13.90	0.00	2.516	4.97	1.82	2.0	98.0	0.0	1.78	0.29	0.70	0.85	2.69	6606	906	5	0	1	0	0	logfile
✔	8GE9	29961	2025-02-11	2023-03-06	3.5	3.79	3.53	3.8	0.003	0.56	0.0	0.04	13.04	0.00	2.215	7.69	0.00	1.7	98.3	0.0	1.38	0.70	0.82	2.93	3.8	0.002	0.49	0.0	0.04	14.72	0.00	2.570	4.73	1.68	1.2	98.8	0.0	1.50	0.33	0.70	0.81	2.45	6519	900	5	0	1	1	0	logfile
✔	8GE5	29956	2025-02-11	2023-03-06	3.2	3.63	3.40	3.6	0.003	0.50	0.0	0.04	12.21	0.00	2.240	5.41	0.00	2.1	97.9	0.0	1.93	0.71	0.84	3.34	3.6	0.003	0.50	0.0	0.04	14.06	0.00	2.538	4.09	2.31	1.7	98.3	0.0	1.86	1.10	0.71	0.84	2.61	6691	901	5	0	1	0	0	logfile
✔	8GEH	29970	2025-02-11	2023-03-06	4.0	4.24	4.00	4.1	0.003	0.43	0.0	0.04	10.85	0.00	2.276	4.83	0.00	2.2	97.8	0.0	1.54	0.72	0.80	—	4.1	0.004	0.53	0.0	0.04	12.12	0.00	2.601	7.44	2.52	2.9	97.1	0.0	1.70	1.53	0.72	0.80	—	5995	960	5	0	1	0	0	logfile
✔	8GEE	29967	2025-02-11	2023-03-06	3.7	3.96	3.74	3.9	0.016	0.82	0.0	0.04	12.17	0.01	2.199	7.10	0.00	1.4	98.6	0.0	1.70	0.70	0.80	2.54	3.9	0.003	0.50	0.0	0.04	14.01	0.00	2.562	5.98	2.37	1.5	98.5	0.0	1.79	0.29	0.71	0.80	1.87	6304	933	5	0	1	1	0	logfile
✔	8GED	29966	2025-02-11	2023-03-06	3.5	3.89	3.70	3.9	0.003	0.48	0.0	0.04	12.40	0.00	2.251	7.07	0.00	1.4	98.6	0.0	1.82	0.71	0.78	2.55	3.9	0.003	0.52	0.0	0.04	14.16	0.00	2.586	6.16	3.35	1.7	98.3	0.0	1.79	0.33	0.70	0.79	2.44	6505	946	5	0	1	0	0	logfile
✔	8GE6	29958	2025-02-11	2023-03-06	3.4	3.67	3.46	3.6	0.003	0.49	0.0	0.04	12.29	0.00	2.224	6.64	0.00	1.9	98.1	0.0	1.32	0.72	0.85	3.66	3.6	0.004	0.54	0.0	0.04	14.19	0.00	2.613	5.30	3.06	2.3	97.7	0.0	1.13	0.29	0.72	0.85	2.42	6560	892	5	0	1	1	0	logfile
✔	8GE2	29953	2025-02-11	2023-03-06	3.3	3.71	3.47	3.7	0.003	0.45	0.0	0.04	12.66	0.00	2.201	5.30	0.00	2.1	97.9	0.0	1.64	0.66	0.82	2.93	3.7	0.003	0.51	0.0	0.04	14.89	0.00	2.546	3.92	3.25	1.7	98.3	0.0	1.91	0.32	0.66	0.81	2.14	6473	908	5	0	1	0	0	logfile
✔	8GEA	29962	2025-02-11	2023-03-06	3.5	3.84	3.59	3.8	0.003	0.48	0.0	0.04	12.73	0.00	2.269	6.68	0.00	2.1	97.9	0.0	1.14	0.69	0.81	2.99	3.8	0.002	0.47	0.0	0.04	14.43	0.00	2.517	4.85	2.51	1.6	98.4	0.0	1.50	0.26	0.70	0.81	2.69	6551	902	5	0	1	0	0	logfile
✔	8GEB	29964	2025-02-11	2023-03-06	3.6	3.88	3.62	3.8	0.003	0.52	0.0	0.04	12.50	0.00	2.333	6.54	0.00	2.4	97.6	0.0	1.44	0.71	0.81	2.77	3.8	0.003	0.49	0.0	0.04	13.79	0.00	2.530	4.47	3.00	2.4	97.6	0.0	1.60	0.31	0.71	0.81	2.57	6223	893	5	0	1	0	0	logfile
✔	8GEJ	29972	2025-02-11	2023-03-06	4.2	4.48	4.17	4.2	0.004	0.50	0.0	0.04	8.38	0.00	2.210	6.00	0.00	3.2	96.8	0.0	1.24	0.71	0.79	—	4.2	0.003	0.48	0.0	0.04	8.59	0.00	2.612	3.00	0.00	3.9	96.1	0.0	0.60	1.10	0.71	0.79	—	5436	950	5	0	1	0	0	logfile
✔	8GE1	29952	2025-02-11	2023-03-06	3.4	3.78	3.54	3.8	0.003	0.51	0.0	0.04	12.49	0.00	2.203	5.64	0.00	2.2	97.8	0.0	1.67	0.71	0.85	3.09	3.8	0.002	0.50	0.0	0.04	14.36	0.00	2.595	4.33	2.90	1.9	98.1	0.0	2.04	0.29	0.65	0.81	2.14	6464	908	5	0	1	0	0	logfile
✔	8GEG	29969	2025-02-11	2023-03-06	3.8	4.13	3.89	4.0	0.003	0.58	0.0	0.04	12.03	0.00	2.221	8.37	0.00	2.2	97.8	0.0	1.48	0.71	0.79	2.69	4.0	0.003	0.56	0.0	0.04	14.19	0.00	2.428	7.60	4.56	2.5	97.5	0.0	1.84	0.38	0.72	0.80	2.31	6481	972	5	0	1	0	0	logfile
✔	8GEi	29971	2025-02-11	2023-03-06	4.1	4.35	4.10	4.2	0.003	0.54	0.0	0.04	10.59	0.00	2.226	4.55	0.00	3.1	96.9	0.0	1.03	0.71	0.79	—	4.2	0.003	0.53	0.0	0.04	9.30	0.00	2.601	4.89	0.00	4.0	96.0	0.0	0.94	1.13	0.71	0.80	—	5452	934	5	0	1	0	0	logfile
✔	8GE7	29959	2025-02-11	2023-03-06	3.4	3.72	3.47	3.7	0.003	0.53	0.0	0.04	12.65	0.00	2.197	7.44	0.00	2.2	97.8	0.0	0.95	0.72	0.84	3.27	3.7	0.004	0.52	0.0	0.04	14.26	0.00	2.426	5.24	1.89	2.5	97.5	0.0	1.09	0.30	0.70	0.83	2.89	6617	895	5	0	1	0	0	logfile

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