Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SHQ	40492	2024-04-09	2023-04-14	2.9	3.47	2.91	3.2	0.004	0.51	0.0	0.04	14.16	0.00	1.938	6.37	0.00	3.3	96.7	0.0	1.83	0.87	0.89	2.72	3.2	0.003	0.54	0.0	0.04	15.26	0.00	1.878	7.20	0.38	3.2	96.8	0.0	1.54	1.09	0.86	0.89	2.46	68007	8828	50	0	48	19	0	logfile
✔	8SHG	40487	2024-04-09	2023-04-14	2.8	3.46	2.87	3.2	0.004	0.52	0.0	0.04	13.86	0.00	1.958	6.91	0.00	3.2	96.7	0.0	1.72	0.85	0.87	2.79	3.2	0.003	0.55	0.0	0.04	15.10	0.00	1.570	7.43	0.64	3.3	96.7	0.0	1.47	0.26	0.84	0.87	2.61	67663	8787	50	0	48	19	0	logfile
✔	8Si8	40502	2024-04-12	2023-04-14	2.99	3.23	3.11	3.2	0.014	1.31	0.0	0.06	19.11	0.01	1.990	4.28	0.41	12.7	86.6	0.7	-5.92	0.66	0.78	3.56	3.2	0.004	0.67	0.0	0.05	17.82	0.00	1.869	16.87	1.63	11.2	88.7	0.1	-1.88	0.95	0.68	0.84	2.15	74753	4420	8	0	65	0	36144	logfile
✔	8Si4	40498	2024-04-12	2023-04-14	2.46	2.61	2.60	2.7	0.014	1.27	0.0	0.07	19.13	0.01	2.040	4.33	0.82	11.4	87.9	0.7	-5.18	0.58	0.72	3.54	2.7	0.005	0.67	0.0	0.05	18.86	0.01	1.854	16.92	1.56	9.2	90.5	0.3	-1.59	0.83	0.63	0.76	2.83	75145	4420	12	0	65	236	36148	logfile
✔	8Si3	40497	2024-04-12	2023-04-14	2.61	2.82	2.75	2.9	0.009	1.18	0.0	0.05	18.92	0.01	1.981	4.43	0.41	8.7	90.7	0.6	-5.14	0.58	0.74	4.13	2.9	0.004	0.63	0.0	0.04	18.01	0.00	1.857	13.78	1.23	7.7	92.1	0.2	-0.74	1.42	0.63	0.83	3.53	74749	4420	12	0	61	160	36136	logfile
✔	8Si2	40496	2024-04-16	2023-04-14	2.19	2.32	2.33	2.4	0.012	1.13	0.0	0.06	20.10	0.01	2.026	2.74	0.20	8.8	91.0	0.3	-3.93	0.63	0.73	3.94	2.4	0.004	0.71	0.0	0.04	19.98	0.01	2.133	11.28	0.97	7.1	92.6	0.3	-0.20	0.62	0.66	0.85	3.45	39022	4420	12	0	74	168	0	logfile
✔	8J26	35945	2024-04-05	2023-04-14	3.4	3.96	3.29	3.7	0.028	1.81	0.0	0.05	28.18	0.00	2.066	7.74	0.56	7.8	92.2	0.0	-1.01	0.76	0.68	2.77	3.7	0.004	1.26	0.0	0.04	28.07	0.00	2.108	13.73	2.79	6.7	93.3	0.0	-1.16	1.24	0.83	0.83	3.14	5406	427	6	90	1	0	0	logfile
✔	8Si6	40500	2024-04-12	2023-04-14	2.44	2.67	2.66	2.8	0.012	1.10	0.0	0.06	19.48	0.01	2.047	3.07	0.00	7.5	91.8	0.7	-5.09	0.45	0.52	1.04	2.7	0.004	0.80	1.0	0.04	18.91	0.00	2.081	14.57	1.43	8.4	91.4	0.3	-0.73	1.75	0.61	0.82	3.20	74889	4428	8	0	65	0	36240	logfile
✔	8Si5	40499	2024-04-12	2023-04-14	2.17	2.32	2.30	2.3	0.015	1.21	0.0	0.07	18.25	0.01	2.001	3.41	0.31	7.7	92.1	0.2	-3.02	0.60	0.78	4.56	2.3	0.003	0.62	0.0	0.05	17.20	0.00	1.884	12.83	0.93	5.1	94.9	0.0	0.04	0.63	0.65	0.86	3.60	74865	4388	12	0	65	404	35916	logfile
✔	8SiB	40505	2024-04-05	2023-04-14	2.62	3.44	2.68	3.3	0.007	1.30	0.0	0.06	11.70	0.01	2.265	4.20	0.78	12.9	85.8	1.3	-5.28	0.73	0.84	3.54	3.3	0.004	0.92	0.0	0.05	15.55	0.00	2.153	13.16	2.84	13.6	86.2	0.2	-1.59	2.03	0.71	0.82	2.88	3544	454	1	0	0	0	0	logfile
✔	8Si7	40501	2024-04-12	2023-04-14	2.59	2.88	2.81	3.0	0.015	1.22	0.0	0.06	19.21	0.01	1.983	3.79	0.20	9.1	90.2	0.7	-4.99	0.58	0.76	4.17	3.0	0.003	0.62	0.0	0.04	17.67	0.00	1.904	13.45	0.79	8.4	91.2	0.4	-0.45	0.84	0.58	0.83	3.67	74897	4420	12	0	65	156	36136	logfile
✔	8J2F	35948	2024-04-05	2023-04-14	3.07	3.19	2.97	3.2	0.005	1.21	2.0	0.09	10.87	0.00	2.473	2.70	0.63	1.6	98.4	0.0	3.43	0.66	0.86	4.25	3.2	0.006	0.64	0.0	0.04	14.91	0.00	2.223	4.82	1.88	1.8	98.2	0.0	2.21	1.85	0.69	0.90	4.07	6164	768	4	0	6	0	0	logfile
✔	8J24	35944	2024-04-06	2023-04-14	2.6	2.10	2.66	1.8	0.002	0.55	2.0	0.06	18.15	0.00	2.131	6.42	3.11	1.9	97.9	0.2	1.18	0.80	0.79	2.75	1.9	0.004	0.60	0.0	0.04	18.13	0.00	2.182	8.06	2.90	3.9	96.1	0.0	1.11	1.08	0.82	0.82	3.28	8626	1105	6	0	1	0	0	logfile
✔	8J2M	35950	2024-04-06	2023-04-14	3.4	4.10	3.44	4.0	0.009	1.36	10.0	0.08	18.83	0.01	2.121	8.77	2.91	3.3	96.7	0.0	-2.01	0.59	0.75	2.41	3.9	0.003	0.76	0.0	0.04	17.70	0.00	2.165	13.60	4.22	4.1	95.9	0.0	0.66	1.75	0.53	0.80	1.59	6574	848	4	0	2	0	0	logfile
✔	8oRE	17121	2024-04-05	2023-04-13	2.5	2.67	2.44	2.7	0.011	2.09	7.0	0.14	10.93	0.01	2.570	0.00	0.00	8.0	92.0	0.0	-2.10	0.32	0.74	5.29	2.7	0.003	0.63	0.0	0.05	17.54	0.00	2.163	2.49	1.99	6.7	93.3	0.0	-1.70	3.45	0.37	0.81	4.37	3615	231	3	0	0	0	1845	logfile
✔	8J1J	35926	2024-04-07	2023-04-13	2.91	2.61	2.94	2.8	0.004	0.53	0.0	0.04	18.68	0.00	2.228	6.59	1.43	2.9	96.9	0.3	-1.23	0.84	0.85	3.09	2.8	0.003	0.58	0.0	0.04	20.20	0.00	2.271	9.19	1.86	3.3	96.5	0.3	0.81	0.55	0.84	0.85	2.81	9793	811	8	151	4	0	0	logfile
✔	8SHC	40483	2024-04-07	2023-04-13	3.0	3.12	2.90	3.2	0.005	0.70	0.0	0.17	21.90	0.01	2.197	6.87	0.19	5.9	94.1	0.0	1.04	0.67	0.78	2.59	3.2	0.002	0.57	0.0	0.04	16.51	0.00	2.193	6.14	2.39	5.7	94.3	0.0	1.41	0.39	0.67	0.81	2.25	10464	1226	4	0	40	0	0	logfile
✔	8SGV	40469	2024-04-09	2023-04-13	2.58	3.25	2.64	3.1	0.007	0.80	0.0	0.05	9.84	0.00	2.260	3.91	0.23	3.4	96.6	0.0	0.82	0.87	0.86	6.07	3.1	0.006	0.60	0.0	0.05	12.94	0.00	2.256	4.78	0.53	3.5	96.5	0.0	0.31	0.45	0.79	0.90	6.02	16409	1993	8	0	8	0	0	logfile
✔	8SGT	40467	2024-04-06	2023-04-13	3.6	3.99	3.64	3.7	0.005	0.75	0.0	0.05	13.35	0.01	2.090	4.53	0.00	2.2	97.8	0.0	-1.14	0.57	0.67	1.72	3.7	0.008	0.72	0.0	0.05	15.43	0.01	2.139	15.66	2.48	5.2	94.7	0.1	0.34	1.50	0.59	0.76	1.28	7119	918	4	0	6	0	0	logfile
✔	8SHE	40485	2024-04-08	2023-04-13	2.8	3.49	2.89	3.2	0.005	0.56	0.0	0.04	14.08	0.00	1.875	6.81	0.00	3.6	96.4	0.0	1.64	0.86	0.89	2.88	3.2	0.003	0.56	0.0	0.04	15.22	0.00	1.100	7.24	0.89	3.3	96.7	0.0	1.34	0.25	0.84	0.87	2.62	66179	8601	49	0	48	19	0	logfile

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