Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YJ5	10816	2024-04-05	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.002	0.64	0.0	0.05	14.95	0.00	2.282	7.66	0.00	6.9	93.1	0.0	-1.68	0.75	0.50	0.71	1.79	2061	306	1	0	0	0	0	logfile
✔	7PXF	13701	2024-04-13	2021-10-08	2.68	2.75	2.73	2.9	0.002	0.45	0.0	0.04	12.99	0.00	2.188	5.55	0.65	2.1	97.9	0.0	-0.25	0.66	0.85	3.21	2.9	0.002	0.52	0.0	0.04	15.68	0.00	2.138	6.73	1.91	2.0	98.0	0.0	0.68	0.49	0.66	0.87	3.56	28099	3540	8	0	7	0	0	logfile
✔	7Q8S	13865	2024-04-10	2021-11-11	3.4	3.39	3.35	3.3	0.002	0.44	0.0	0.04	8.15	0.00	2.222	3.32	0.23	2.1	97.9	0.0	1.31	0.68	0.86	4.17	3.3	0.002	0.52	0.0	0.04	12.88	0.00	2.177	4.75	1.47	2.4	97.6	0.0	1.09	0.54	0.70	0.89	3.61	19665	2485	15	0	10	0	0	logfile
✔	8B0i	15784	2024-04-09	2022-09-07	4.28	5.23	4.35	4.5	0.012	1.98	1.0	0.11	24.77	0.01	1.911	8.92	0.14	5.1	94.9	0.0	-1.62	0.77	0.61	—	4.5	0.002	0.60	0.0	0.04	22.78	0.00	1.983	13.77	0.00	5.0	95.0	0.0	0.27	1.44	0.80	0.73	—	17636	1075	5	103	0	0	7831	logfile
✔	6RE2	4839	2024-04-05	2019-04-12	3.2	3.21	—	3.3	0.012	1.02	0.0	0.06	14.08	0.01	1.994	5.94	0.43	4.9	94.9	0.2	-3.96	0.73	0.85	2.91	3.3	0.002	0.58	0.0	0.04	15.67	0.00	2.012	9.65	1.97	3.3	96.6	0.1	0.19	1.58	0.72	0.87	2.49	53720	7099	37	0	11	0	0	logfile
✔	7UKJ	26582	2024-04-08	2022-04-01	3.6	4.01	—	3.7	0.003	0.61	0.0	0.05	14.53	0.00	2.183	13.02	1.78	12.8	87.2	0.0	-2.80	0.74	0.85	2.36	3.7	0.002	0.55	0.0	0.05	15.24	0.00	2.226	11.60	2.48	10.9	89.1	0.0	-2.69	0.21	0.74	0.84	2.05	14196	1862	3	0	0	0	0	logfile
✔	7PE8	13348	2024-04-13	2021-08-09	3.2	3.51	—	3.4	0.002	0.41	0.0	0.04	8.71	0.00	2.255	4.47	1.65	3.2	96.8	0.0	-0.20	0.79	0.81	2.75	3.4	0.002	0.52	0.0	0.04	12.72	0.00	2.182	7.39	1.79	4.0	96.0	0.0	0.60	0.47	0.80	0.83	1.95	29291	3832	8	0	3	0	0	logfile
✔	8H3E	34465	2024-04-12	2022-10-08	3.06	3.44	3.40	3.3	0.004	0.51	0.0	0.04	16.80	0.00	1.960	8.20	0.22	5.4	94.6	0.0	-2.27	0.81	0.89	2.90	3.3	0.002	0.54	0.0	0.05	16.83	0.00	2.143	2.01	2.91	4.0	96.0	0.0	-1.69	0.90	0.81	0.88	2.62	24957	3159	6	0	18	0	0	logfile
✔	8FEJ	29029	2024-04-07	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.253	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.6	0.002	0.54	0.0	0.04	12.30	0.00	2.260	9.45	0.00	5.5	94.3	0.2	-0.55	1.30	0.91	0.74	—	10464	1368	3	0	0	0	0	logfile
✔	8AVW	15685	2024-04-06	2022-08-27	3.62	4.19	3.72	4.1	0.008	1.38	0.0	0.08	18.22	0.01	2.602	1.79	3.45	4.7	95.1	0.2	-4.09	0.77	0.85	1.78	4.1	0.002	0.61	0.0	0.04	18.15	0.00	2.249	4.86	1.51	1.6	98.4	0.0	0.61	0.68	0.77	0.80	1.77	8992	1156	4	0	2	0	0	logfile
✔	8FC7	28975	2024-04-06	2022-12-01	3.3	3.60	3.44	3.6	0.004	0.83	0.0	0.17	14.93	0.01	2.234	5.39	0.00	4.2	95.8	0.0	0.16	0.62	0.72	2.39	3.6	0.002	0.73	0.0	0.08	15.93	0.00	1.939	6.12	1.03	5.3	94.7	0.0	1.04	1.26	0.67	0.73	2.10	50580	3284	16	4	8	0	24944	logfile
✔	7AU2	11923	2024-04-07	2020-11-02	2.43	2.52	—	2.5	0.005	0.71	0.0	0.05	15.75	0.00	2.392	2.29	0.83	2.2	97.8	0.0	-0.04	0.71	0.86	4.87	2.5	0.002	0.51	0.0	0.04	15.48	0.00	2.323	3.69	1.16	1.6	98.4	0.0	0.76	0.35	0.72	0.88	3.77	11236	1372	6	0	12	0	0	logfile
✔	6XHJ	22187	2024-04-07	2020-06-18	3.62	4.10	—	4.0	0.014	1.38	18.0	0.08	14.54	0.01	2.225	3.12	0.00	3.5	96.5	0.0	-2.59	0.61	0.53	0.86	4.0	0.002	0.64	0.0	0.04	15.85	0.00	2.055	5.26	1.56	1.8	98.2	0.0	0.32	2.44	0.75	0.75	1.05	60624	8514	18	0	36	0	0	logfile
✔	7ZKi	14763	2024-04-06	2022-04-13	3.6	3.32	3.71	3.1	0.011	0.83	0.0	0.05	18.39	0.04	1.408	9.61	0.17	2.2	97.8	0.0	-0.08	0.57	0.73	1.30	3.1	0.002	0.91	0.0	0.04	19.16	0.01	2.010	8.51	1.37	2.8	97.2	0.0	0.13	0.40	0.57	0.74	1.35	7120	688	5	77	2	0	0	logfile
✔	7V99	31811	2024-04-08	2021-08-24	3.54	4.33	—	3.3	0.002	0.53	0.0	0.03	20.83	0.00	2.258	7.85	0.10	5.9	94.1	0.1	-3.21	0.79	0.68	0.93	3.3	0.002	0.59	0.0	0.03	21.18	0.00	2.191	12.80	1.60	5.9	94.0	0.1	-0.17	1.38	0.82	0.76	0.55	14582	1170	5	249	0	0	0	logfile
✔	8EiQ	28161	2024-04-07	2022-09-15	3.0	2.87	3.05	3.2	0.006	1.03	0.0	0.04	13.07	0.01	1.936	1.35	1.78	1.3	98.7	0.0	-1.39	0.65	0.87	3.70	3.2	0.002	0.50	0.0	0.04	15.65	0.00	1.971	2.85	2.17	1.6	98.4	0.0	0.87	1.59	0.65	0.86	2.27	9578	1162	3	0	25	0	0	logfile
✔	6ZH2	11211	2024-04-13	2020-06-20	3.92	4.42	3.96	4.0	0.003	0.66	0.0	0.04	14.54	0.00	2.169	15.46	0.06	7.8	92.1	0.1	-0.24	0.88	0.86	1.25	4.0	0.002	0.66	0.0	0.04	15.94	0.00	2.143	12.41	1.12	6.0	94.0	0.0	0.39	1.50	0.87	0.86	1.13	29313	3676	1	0	28	0	0	logfile
✔	7KNB	22941	2024-04-13	2020-11-04	3.93	4.91	4.02	3.9	0.003	0.55	0.0	0.04	13.77	0.00	2.207	4.35	0.00	3.6	96.4	0.0	-0.61	0.87	0.76	0.69	3.9	0.002	0.59	0.0	0.04	14.53	0.00	2.108	12.36	1.18	3.5	96.5	0.0	-0.35	1.19	0.90	0.84	0.84	29224	3637	13	0	56	0	0	logfile
✔	7WAE	32383	2024-04-12	2021-12-14	2.64	3.01	2.60	2.9	0.003	0.56	0.0	0.05	13.86	0.00	1.339	7.98	0.27	3.2	96.6	0.2	0.26	0.79	0.87	2.86	2.9	0.002	0.52	0.0	0.04	15.59	0.00	1.942	7.20	1.49	3.5	96.5	0.0	0.27	0.39	0.79	0.89	2.89	24850	3227	16	0	19	0	0	logfile
✔	7XDA	33140	2024-04-09	2022-03-26	2.98	3.15	3.14	3.1	0.005	0.54	0.0	0.04	16.34	0.00	1.978	4.13	1.85	6.3	93.6	0.1	-3.63	0.66	0.84	3.84	3.1	0.002	0.56	0.0	0.04	16.76	0.00	1.976	4.20	1.97	4.0	95.9	0.1	-0.51	0.62	0.65	0.85	3.82	15729	1071	5	0	0	0	7646	logfile

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