Table showing results for April 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CS1	7579	2024-04-12	2018-03-19	4.6	4.79	4.84	6.8	0.006	0.92	0.0	0.06	13.39	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.004	0.84	0.0	0.05	11.48	0.01	1.983	23.93	0.00	9.1	90.9	0.0	-2.58	1.88	0.71	0.57	—	25995	3202	27	0	75	0	0	logfile
✔	7TW2	26148	2024-04-08	2022-02-06	4.8	4.73	—	3.9	0.003	0.75	0.0	0.04	13.67	0.01	2.177	9.73	0.07	2.2	97.8	0.0	-1.27	0.66	0.72	—	3.8	0.004	0.71	0.0	0.04	13.86	0.00	2.160	15.47	0.00	2.8	97.2	0.0	1.21	1.65	0.66	0.75	—	12838	1619	4	0	2	0	0	logfile
✔	7LVT	23542	2024-04-10	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.40	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.72	0.0	0.04	13.01	0.00	2.198	12.57	0.00	5.5	94.3	0.1	0.26	16.94	0.55	0.45	—	18944	2876	4	0	0	0	0	logfile
✔	7VHJ	31996	2024-04-12	2021-09-22	4.2	4.29	—	4.2	0.004	0.65	0.0	0.04	13.11	0.00	2.109	15.60	0.07	8.2	91.8	0.0	-3.85	0.76	0.79	—	4.2	0.005	0.70	0.0	0.04	13.42	0.00	2.048	15.20	0.00	8.0	92.0	0.0	-1.58	0.56	0.76	0.79	—	25353	3257	3	0	0	0	0	logfile
✔	7L8E	23231	2024-04-09	2020-12-31	4.2	4.35	4.06	4.2	0.022	1.74	1.0	0.15	11.27	0.02	2.253	2.37	0.00	1.3	98.7	0.0	1.11	0.77	0.80	—	4.2	0.004	0.69	0.0	0.05	12.04	0.00	2.048	11.08	0.00	3.6	96.4	0.0	-0.09	1.73	0.78	0.81	—	15827	1702	35	0	305	0	0	logfile
✔	3JAU	6366	2024-04-07	2015-06-24	4.8	4.76	—	6.0	0.027	2.66	660.0	0.16	14.74	0.02	1.686	10.72	1.90	4.6	94.1	1.3	-2.16	0.21	0.38	—	5.4	0.003	0.71	0.0	0.04	13.37	0.00	2.144	19.50	0.00	3.7	95.9	0.4	-0.66	1.39	0.24	0.60	—	114900	14700	180	0	0	0	0	logfile
✔	5WVE	6690	2024-04-12	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.50	0.01	1.493	69.05	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	4.5	0.004	0.84	0.0	0.04	13.65	0.00	1.771	25.54	0.00	7.8	91.5	0.7	-1.97	1.60	0.79	0.60	—	78605	9766	39	0	21	0	0	logfile
✔	6PWF	20507	2024-04-09	2019-07-22	4.07	4.13	—	4.1	0.009	1.01	0.0	0.06	26.98	0.01	2.066	6.15	0.11	9.8	90.2	0.0	-6.10	0.64	0.76	—	4.1	0.004	0.66	0.0	0.04	26.90	0.00	2.060	11.29	0.00	6.9	93.1	0.0	-2.60	1.13	0.64	0.76	—	15197	1208	11	292	0	0	0	logfile
✔	7Z8L	14556	2024-04-09	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	9.68	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.002	0.54	0.0	0.04	6.61	0.00	1.853	3.49	0.00	4.5	95.5	0.0	2.20	0.65	0.84	0.80	—	16513	3311	3	0	5	0	0	logfile
✔	7MLU	23910	2024-04-11	2021-04-29	4.1	5.27	—	4.2	0.004	0.88	0.0	0.05	9.81	0.01	2.271	7.00	0.21	6.4	93.6	0.0	-4.41	0.72	0.65	—	4.2	0.003	0.77	0.0	0.04	11.75	0.00	2.146	22.08	0.00	7.2	92.8	0.0	-1.80	1.32	0.75	0.77	—	21886	2746	20	0	5	0	0	logfile
✔	7L8G	23233	2024-04-09	2020-12-31	4.3	4.35	4.01	4.1	0.022	1.76	0.0	0.16	11.31	0.02	2.354	1.35	0.00	1.2	98.8	0.0	0.64	0.79	0.81	—	4.1	0.006	0.78	0.0	0.05	12.14	0.00	1.999	13.27	0.00	4.6	95.4	0.0	-0.56	1.72	0.79	0.83	—	15802	1695	39	0	307	0	0	logfile
✔	7LGM	23327	2024-04-07	2021-01-20	4.4	4.58	4.39	4.5	0.018	1.88	0.0	0.10	10.72	0.01	2.398	2.68	0.00	7.0	93.0	0.0	-1.52	0.65	0.53	—	4.5	0.003	0.81	0.0	0.05	12.72	0.00	2.196	15.72	0.00	11.4	88.4	0.1	-2.04	3.75	0.73	0.70	—	10954	1438	4	0	2	0	0	logfile
✔	7VFP	31957	2024-04-06	2021-09-13	4.03	4.38	—	4.2	0.004	0.84	0.0	0.05	13.88	0.00	1.933	18.11	0.00	6.1	93.8	0.1	0.05	0.65	0.78	—	4.2	0.003	0.76	0.0	0.04	14.00	0.00	1.992	15.72	0.00	7.2	92.8	0.1	0.08	0.53	0.64	0.78	—	8857	1130	8	0	3	2	0	logfile
✔	8DUA	27718	2024-04-09	2022-07-27	4.32	5.26	4.35	4.3	0.005	0.79	4.0	0.06	19.51	0.00	1.889	5.05	0.19	5.6	94.2	0.2	-1.65	0.70	0.61	—	4.3	0.003	0.73	0.0	0.05	12.89	0.00	2.057	13.77	0.00	7.2	92.8	0.0	-1.69	2.56	0.80	0.81	—	15612	1815	33	0	87	0	0	logfile
✔	6UDA	20735	2024-04-11	2019-09-19	4.2	4.81	—	4.4	0.017	1.89	3.0	0.22	11.96	0.01	2.004	2.10	0.34	2.4	97.1	0.5	0.89	0.71	0.65	—	4.4	0.004	0.73	0.0	0.04	12.44	0.00	2.109	12.33	0.00	5.6	94.3	0.1	-0.33	0.83	0.85	0.83	—	23733	3024	18	0	18	0	0	logfile
✔	6o1o	0454	2024-04-09	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	18.29	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.012	1.72	0.0	0.07	17.09	0.00	1.997	30.54	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	7Wi8	32527	2024-04-07	2022-01-03	4.17	4.59	—	4.4	0.008	1.00	0.0	0.06	14.72	0.01	2.315	5.40	1.22	14.2	85.7	0.1	-5.88	0.69	0.79	—	4.4	0.003	0.71	0.0	0.04	12.39	0.00	2.161	11.53	0.00	12.3	87.7	0.0	-3.27	1.11	0.69	0.79	—	9268	1446	4	0	4	0	0	logfile
✔	7LF1	23297	2024-04-15	2021-01-15	4.04	4.49	4.10	4.2	0.006	1.07	0.0	0.06	9.39	0.01	1.592	12.06	0.16	12.9	86.7	0.4	-4.16	0.83	0.66	—	4.2	0.004	0.79	0.0	0.05	11.05	0.01	1.344	22.54	0.00	12.5	87.4	0.1	-2.25	1.31	0.86	0.75	—	34518	4548	24	0	12	0	0	logfile
✔	7JQQ	22441	2024-04-13	2020-08-11	4.1	4.43	—	4.3	0.004	0.88	0.0	0.04	26.55	0.01	1.379	26.31	0.00	9.7	90.3	0.0	-2.31	0.35	0.57	—	4.3	0.005	0.93	0.0	0.05	26.38	0.01	1.853	32.03	0.00	12.4	87.6	0.0	-2.84	0.52	0.35	0.60	—	28416	1635	15	705	6	0	0	logfile
✔	6VQi	21351	2024-04-05	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.003	0.58	0.0	0.04	4.43	0.00	2.212	4.17	0.00	6.5	93.4	0.1	1.98	0.77	0.56	0.74	—	5278	1062	8	0	0	0	0	logfile

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