Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CHV	45603	2025-04-27	2024-07-02	3.95	4.29	3.75	4.3	0.011	1.54	33.0	0.11	18.20	0.01	2.106	11.74	4.86	6.9	93.1	0.0	-1.78	0.65	0.66	0.86	4.3	0.002	0.64	0.0	0.04	18.30	0.00	2.404	6.10	3.03	3.1	96.9	0.0	-0.30	1.49	0.68	0.72	0.97	6644	873	4	0	1	0	0	logfile
✔	9FX3	50842	2025-04-30	2024-07-01	3.2	3.90	3.46	3.7	0.005	0.92	0.0	0.06	14.83	0.01	2.280	4.31	0.57	2.5	97.5	0.0	-0.71	0.80	0.79	2.49	3.7	0.003	0.55	0.0	0.04	14.83	0.00	2.541	5.94	2.84	2.1	97.9	0.0	1.15	1.34	0.84	0.84	2.67	9511	1178	6	0	15	0	0	logfile
✔	9CHM	45590	2025-04-28	2024-07-01	3.47	4.54	3.49	4.2	0.004	0.82	0.0	0.04	16.49	0.00	2.176	16.62	0.35	5.8	94.2	0.0	-0.84	0.74	0.84	1.33	4.1	0.004	0.75	0.0	0.04	17.24	0.00	2.525	12.03	3.78	5.3	94.7	0.0	-0.72	1.77	0.73	0.84	1.38	7498	967	4	0	0	0	0	logfile
✔	9CGZ	45589	2025-04-28	2024-07-01	2.69	2.42	2.57	2.8	0.011	1.91	0.0	0.09	12.93	0.01	2.545	0.00	0.26	6.8	92.0	1.2	-2.13	0.26	0.62	4.31	2.8	0.003	0.63	0.0	0.05	17.74	0.00	2.493	4.99	1.82	7.0	93.0	0.0	-2.43	0.97	0.39	0.79	5.10	6822	438	6	0	0	0	3480	logfile
✔	9CGX	45588	2025-04-28	2024-07-01	2.97	2.72	2.89	3.0	0.011	2.03	0.0	0.09	13.19	0.01	2.510	0.00	2.82	4.9	92.4	2.8	-2.56	0.26	0.63	4.86	3.1	0.003	0.63	0.0	0.05	16.42	0.00	2.530	3.74	1.28	7.9	91.9	0.2	-2.78	1.38	0.36	0.78	4.88	6960	444	6	0	0	0	3540	logfile
✔	9FX2	50841	2025-04-30	2024-07-01	3.3	4.15	3.33	3.7	0.005	0.84	0.0	0.05	15.54	0.01	2.260	3.06	0.19	1.9	98.0	0.1	0.11	0.90	0.85	1.30	3.7	0.003	0.57	0.0	0.04	15.89	0.00	2.578	5.69	2.76	2.7	97.3	0.0	1.07	1.34	0.90	0.86	1.49	9311	1170	2	0	5	0	0	logfile
✔	9CG4	45568	2025-04-29	2024-06-28	3.37	4.27	3.50	3.9	0.003	0.61	0.0	0.04	19.71	0.00	2.236	9.08	0.35	4.6	95.4	0.0	-0.68	0.83	0.81	1.95	3.9	0.003	0.64	0.0	0.04	19.93	0.00	2.086	6.70	2.48	3.9	96.0	0.1	0.13	0.48	0.81	0.82	2.02	8375	966	6	43	0	0	0	logfile
✔	9CFL	45550	2025-04-29	2024-06-27	2.3	2.52	2.42	2.7	0.008	1.21	2.0	0.07	25.65	0.02	1.887	3.76	3.83	1.1	98.9	0.0	-0.09	0.63	0.81	3.96	2.7	0.003	0.59	0.0	0.05	18.90	0.00	1.977	5.48	2.34	1.3	98.7	0.0	1.48	1.13	0.60	0.80	3.44	8925	1068	10	0	7	8	0	logfile
✔	9FUS	50776	2025-04-29	2024-06-26	3.8	3.75	3.43	3.7	0.004	0.72	0.0	0.04	12.69	0.00	1.817	5.14	0.10	6.6	93.2	0.2	-2.08	0.66	0.80	1.59	3.7	0.004	0.72	0.0	0.04	15.71	0.00	2.459	10.45	3.00	6.6	93.4	0.0	-0.73	0.90	0.69	0.78	1.82	8822	1138	2	0	0	0	0	logfile
✔	9FV9	50793	2025-04-29	2024-06-26	3.6	3.99	3.72	3.9	0.006	1.07	1.0	0.06	17.48	0.01	2.042	3.97	0.31	5.8	94.1	0.1	-3.86	0.71	0.79	0.77	3.9	0.002	0.65	0.0	0.04	18.06	0.00	2.485	6.54	4.34	4.5	95.4	0.1	-1.22	0.87	0.71	0.78	0.63	8822	1138	2	0	0	0	0	logfile
✔	9FVA	50794	2025-04-29	2024-06-26	4.4	4.69	4.51	4.5	0.005	1.04	0.0	0.05	16.48	0.01	2.206	7.15	0.72	6.6	93.3	0.1	-1.42	0.66	0.76	—	4.5	0.003	0.76	0.0	0.04	14.57	0.00	2.332	14.41	0.00	5.7	94.3	0.0	-0.49	1.53	0.68	0.77	—	8822	1138	2	0	0	0	0	logfile
✔	9iK4	60648	2025-04-30	2024-06-26	3.34	3.55	3.33	3.5	0.013	1.41	1.0	0.26	19.37	0.01	1.881	9.85	0.00	14.1	85.9	0.1	-6.52	0.55	0.67	2.00	3.5	0.004	0.83	0.0	0.04	18.71	0.00	2.417	10.05	2.69	12.7	87.3	0.0	-3.74	0.62	0.58	0.77	1.91	10114	1214	4	0	4	0	0	logfile
✔	9FUY	50782	2025-04-29	2024-06-26	4.1	4.74	4.09	4.4	0.005	1.04	1.0	0.05	17.01	0.01	2.203	8.10	0.62	4.7	95.2	0.1	0.02	0.71	0.82	—	4.5	0.003	0.73	0.0	0.04	14.04	0.00	2.499	13.69	0.00	4.3	95.7	0.0	0.54	0.69	0.69	0.82	—	8822	1138	2	0	0	0	0	logfile
✔	9FUZ	50783	2025-04-29	2024-06-26	4.2	4.66	4.30	4.4	0.005	0.98	0.0	0.05	16.67	0.01	2.201	8.32	0.62	4.6	95.1	0.3	-0.25	0.68	0.81	—	4.4	0.004	0.69	0.0	0.04	13.95	0.00	2.418	14.41	0.00	4.9	94.7	0.4	1.04	1.01	0.68	0.81	—	8822	1138	2	0	0	0	0	logfile
✔	9FV8	50792	2025-04-29	2024-06-26	3.4	3.73	3.48	3.7	0.005	0.91	0.0	0.05	16.94	0.01	2.273	3.24	0.31	6.9	93.0	0.1	-3.46	0.70	0.78	1.17	3.7	0.003	0.64	0.0	0.04	17.74	0.00	2.493	6.15	4.44	6.3	93.7	0.1	-1.57	0.43	0.73	0.83	0.69	8822	1138	2	0	0	0	0	logfile
✔	9FV7	50791	2025-04-29	2024-06-26	4.0	4.46	4.11	4.3	0.006	1.18	0.0	0.06	16.98	0.01	2.244	10.39	0.93	4.1	95.6	0.3	-2.26	0.75	0.81	—	4.2	0.004	0.72	0.0	0.04	17.25	0.00	2.529	15.03	5.06	4.5	95.5	0.0	0.91	0.86	0.76	0.83	—	8822	1138	2	0	0	0	0	logfile
✔	9FUW	50780	2025-04-29	2024-06-26	3.8	4.20	3.89	4.0	0.004	0.73	2.0	0.04	17.19	0.00	2.221	13.46	0.31	5.7	94.2	0.1	-0.15	0.74	0.81	1.18	4.0	0.003	0.72	0.0	0.04	17.69	0.00	2.519	10.45	3.10	4.5	95.4	0.1	0.48	1.14	0.74	0.81	1.34	8822	1138	2	0	0	0	0	logfile
✔	9FV6	50790	2025-04-29	2024-06-26	3.8	4.65	3.83	4.1	0.005	0.89	0.0	0.04	15.83	0.01	2.203	6.31	0.31	5.1	94.7	0.2	0.54	0.80	0.85	0.70	4.1	0.003	0.72	0.0	0.04	16.50	0.00	2.581	12.96	2.07	4.3	95.6	0.1	1.46	0.49	0.80	0.86	0.89	8822	1138	2	0	0	0	0	logfile
✔	9FUQ	50774	2025-04-29	2024-06-26	3.8	3.88	3.57	3.8	0.005	0.75	0.0	0.04	13.92	0.00	2.209	6.72	0.41	7.8	92.1	0.1	-4.19	0.64	0.81	1.29	3.8	0.002	0.70	0.0	0.04	15.80	0.00	2.524	4.84	2.17	6.2	93.7	0.1	-1.78	0.59	0.69	0.81	0.86	8924	1138	4	0	2	0	0	logfile
✔	9FUV	50779	2025-04-29	2024-06-26	4.0	4.34	4.07	4.2	0.004	0.69	0.0	0.04	17.16	0.00	2.190	14.25	0.62	5.0	94.7	0.3	-0.04	0.72	0.80	—	4.2	0.003	0.74	0.0	0.04	17.82	0.00	2.585	13.91	4.75	4.3	95.5	0.2	0.51	0.90	0.74	0.81	—	8822	1138	2	0	0	0	0	logfile

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