Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9Co9	45774	2025-04-27	2024-07-16	3.44	4.12	3.45	3.9	0.006	1.02	0.0	0.06	12.97	0.01	2.330	6.14	0.72	6.3	93.1	0.6	-2.36	0.77	0.78	3.28	3.9	0.004	0.79	0.0	0.05	15.64	0.00	2.398	8.51	2.86	4.7	94.9	0.3	-1.44	2.39	0.75	0.83	2.86	5198	661	4	0	0	0	0	logfile
✔	9iRW	60823	2025-04-26	2024-07-16	3.26	3.49	3.17	3.5	0.007	0.72	0.0	0.04	11.88	0.01	2.239	8.79	3.47	4.9	95.1	0.0	-0.95	0.58	0.79	2.21	3.5	0.004	0.69	0.0	0.04	14.35	0.00	2.494	8.92	3.72	4.9	95.1	0.0	-0.68	0.29	0.63	0.82	2.60	3808	499	2	0	1	0	0	logfile
✔	9CMP	45752	2025-04-27	2024-07-15	3.3	3.63	3.24	3.4	0.004	0.77	0.0	0.05	14.58	0.00	2.141	1.52	0.46	3.9	96.1	0.0	-1.15	0.73	0.66	2.05	3.5	0.003	0.62	0.0	0.04	16.55	0.00	2.235	9.38	2.29	3.2	96.8	0.0	-0.39	1.57	0.76	0.71	1.67	6211	768	4	43	1	0	0	logfile
✔	9CMi	45749	2025-04-28	2024-07-15	2.83	3.66	2.87	3.4	0.003	0.82	0.0	0.04	15.70	0.00	2.188	8.96	1.04	4.1	95.8	0.1	-0.87	0.75	0.77	3.20	3.4	0.003	0.89	0.0	0.04	15.72	0.00	2.287	8.77	2.20	3.4	96.6	0.0	-0.33	0.96	0.76	0.78	2.80	7877	1025	7	0	1	2	0	logfile
✔	9CLP	45728	2025-04-27	2024-07-12	3.43	3.82	3.38	3.8	0.012	0.53	0.0	0.04	12.34	0.00	2.160	4.52	0.00	2.3	97.7	0.0	0.28	0.68	0.78	3.00	3.8	0.003	0.57	0.0	0.04	14.16	0.00	2.274	5.55	2.19	3.3	96.7	0.0	-0.04	0.67	0.66	0.79	2.53	5035	650	5	0	11	0	0	logfile
✔	9G2W	50986	2025-04-26	2024-07-11	3.6	4.37	3.61	3.9	0.009	1.17	0.0	0.08	14.47	0.02	2.354	11.68	0.73	1.9	98.1	0.0	-0.44	0.68	0.82	1.48	3.9	0.003	0.63	0.0	0.03	16.55	0.00	2.500	7.40	1.70	1.1	98.9	0.0	5.76	0.71	0.68	0.83	0.59	3838	478	2	0	0	0	0	logfile
✔	9G2U	50984	2025-04-26	2024-07-11	3.45	4.13	3.43	3.8	0.011	1.37	0.0	0.10	12.82	0.02	2.127	9.87	0.26	1.3	98.7	0.0	1.40	0.67	0.77	0.82	3.8	0.003	0.53	0.0	0.03	15.97	0.00	2.505	7.13	1.55	0.9	99.1	0.0	6.28	4.28	0.71	0.83	0.52	3634	456	2	0	0	0	0	logfile
✔	9CK8	45644	2025-04-30	2024-07-08	3.04	3.30	3.15	3.3	0.006	1.01	0.0	0.06	12.90	0.01	2.121	3.38	0.00	4.0	96.0	0.0	-0.52	0.68	0.84	4.82	3.3	0.003	0.70	0.0	0.04	13.57	0.00	2.537	4.55	2.00	2.6	97.4	0.0	-0.07	0.84	0.65	0.84	4.38	9966	1001	30	0	283	0	0	logfile
✔	9CK7	45643	2025-04-30	2024-07-08	3.45	3.77	3.60	3.7	0.005	1.04	0.0	0.06	13.79	0.02	2.103	4.85	0.11	4.6	95.4	0.0	-1.41	0.64	0.78	3.38	3.7	0.004	0.78	0.0	0.04	14.32	0.00	2.405	8.80	4.29	4.9	95.1	0.0	-0.73	0.87	0.67	0.80	2.81	10026	1001	32	0	292	0	0	logfile
✔	9iNY	60712	2025-04-29	2024-07-08	3.6	3.79	3.16	4.0	0.003	0.75	4.0	0.05	12.39	0.00	1.909	10.87	0.71	7.2	92.0	0.7	-1.95	0.66	0.82	2.41	4.0	0.003	0.61	0.0	0.04	14.13	0.00	2.591	7.99	1.32	7.8	91.3	0.9	-2.56	1.38	0.66	0.84	2.31	8793	1125	3	0	0	0	0	logfile
✔	9iNF	60705	2025-04-28	2024-07-06	3.36	3.58	3.31	3.6	0.003	0.67	0.0	0.04	17.90	0.00	2.212	14.77	0.56	3.5	96.5	0.0	1.40	0.57	0.80	1.29	3.6	0.004	0.66	0.0	0.04	17.03	0.00	2.470	13.16	4.65	3.8	96.2	0.0	1.80	0.35	0.55	0.81	1.22	7282	802	6	0	18	6	0	logfile
✔	9iND	60703	2025-04-28	2024-07-06	2.88	2.01	2.90	1.9	0.011	1.11	0.0	0.06	11.53	0.01	2.266	5.06	0.26	4.9	95.1	0.0	-3.25	0.76	0.77	5.00	1.9	0.003	0.67	0.0	0.05	13.91	0.00	2.524	6.95	2.34	3.9	96.1	0.0	-0.37	1.22	0.77	0.78	3.93	7644	1010	7	0	9	0	0	logfile
✔	9CJ8	45625	2025-04-30	2024-07-05	3.74	3.98	3.80	3.9	0.006	1.19	0.0	0.06	14.81	0.01	1.437	4.05	0.00	4.3	95.7	0.0	-1.31	0.65	0.76	2.04	3.9	0.004	0.91	0.0	0.05	16.11	0.00	2.418	14.12	3.22	3.5	96.5	0.0	-0.77	0.59	0.67	0.79	1.93	9750	989	22	0	269	0	0	logfile
✔	9FZ5	50893	2025-04-28	2024-07-04	3.57	3.95	3.63	4.0	0.004	0.74	1.0	0.05	18.55	0.00	2.055	8.35	6.16	9.8	89.7	0.5	-4.53	0.72	0.84	2.93	4.0	0.003	0.64	0.0	0.04	18.60	0.00	2.502	4.68	5.37	7.2	92.6	0.2	-3.50	0.37	0.69	0.84	2.62	8082	1006	3	0	0	0	0	logfile
✔	9CiA	45615	2025-04-28	2024-07-03	3.39	3.87	3.61	3.8	0.004	0.80	0.0	0.05	13.15	0.01	2.263	5.57	0.12	4.4	95.6	0.0	-1.69	0.58	0.73	2.21	3.8	0.004	0.73	0.0	0.04	16.15	0.00	2.438	13.00	4.25	4.9	95.1	0.0	-0.88	0.58	0.60	0.75	1.65	7918	1025	13	0	1	0	0	logfile
✔	9iMH	60689	2025-04-28	2024-07-03	4.2	3.96	3.73	4.1	0.006	1.06	7.0	0.08	15.41	0.01	2.171	19.62	0.70	12.0	84.5	3.5	-2.10	0.51	0.74	—	4.1	0.005	1.00	0.0	0.05	15.54	0.01	2.512	16.20	0.00	13.8	84.5	1.7	-1.74	1.52	0.51	0.78	—	7674	960	6	0	0	0	0	logfile
✔	9CHT	45601	2025-04-29	2024-07-02	3.54	3.73	3.57	3.6	0.003	0.66	0.0	0.04	14.85	0.01	2.203	16.59	0.32	9.9	90.0	0.1	-1.62	0.54	0.47	0.88	3.6	0.003	0.66	0.0	0.04	16.55	0.00	2.482	13.45	1.16	9.6	90.3	0.1	-1.41	0.98	0.55	0.50	0.81	8445	1034	3	0	0	0	0	logfile
✔	9CHV	45603	2025-04-27	2024-07-02	3.95	4.29	3.75	4.3	0.011	1.54	33.0	0.11	18.20	0.01	2.106	11.74	4.86	6.9	93.1	0.0	-1.78	0.65	0.66	0.86	4.3	0.002	0.64	0.0	0.04	18.30	0.00	2.404	6.10	3.03	3.1	96.9	0.0	-0.30	1.49	0.68	0.72	0.97	6644	873	4	0	1	0	0	logfile
✔	9iM6	60685	2025-04-29	2024-07-02	3.21	3.45	3.24	3.4	0.003	0.62	0.0	0.04	18.98	0.01	2.142	7.20	0.20	6.4	93.2	0.4	1.15	0.65	0.84	1.89	3.4	0.003	0.60	0.0	0.04	18.96	0.00	2.571	6.20	2.13	6.3	93.5	0.3	1.67	0.29	0.65	0.84	2.06	8982	1134	2	0	0	0	0	logfile
✔	9CHX	45604	2025-04-28	2024-07-02	3.5	3.91	3.86	3.9	0.007	0.70	0.0	0.04	17.12	0.01	2.146	9.43	0.00	4.9	95.1	0.0	-0.53	0.65	0.68	2.27	3.9	0.002	0.60	0.0	0.04	17.95	0.00	2.540	6.27	2.62	3.3	96.7	0.0	0.11	0.46	0.64	0.71	1.34	7129	889	5	0	2	0	0	logfile

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