Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iUQ	60912	2025-04-27	2024-07-22	3.3	3.52	3.23	3.5	0.006	0.84	2.0	0.05	18.19	0.01	2.253	6.40	0.72	3.2	96.8	0.0	0.27	0.66	0.83	2.01	3.5	0.003	0.59	0.0	0.04	18.28	0.00	2.454	6.48	3.19	3.1	96.9	0.0	0.92	1.26	0.66	0.87	1.94	6399	784	3	0	2	0	0	logfile
✔	9iUZ	60916	2025-04-29	2024-07-22	3.19	3.81	3.33	3.7	0.002	0.56	0.0	0.04	18.04	0.00	2.226	7.81	0.55	3.4	96.6	0.0	1.40	0.75	0.73	1.79	3.7	0.003	0.60	0.0	0.04	18.16	0.00	2.485	5.59	2.22	3.5	96.5	0.0	1.45	0.93	0.75	0.82	1.51	8349	1061	5	0	2	0	0	logfile
✔	9iUU	60914	2025-04-27	2024-07-22	3.29	3.45	3.35	3.5	0.006	0.86	1.0	0.05	16.62	0.01	2.254	9.61	0.86	4.6	95.4	0.0	-0.39	0.67	0.85	2.48	3.5	0.003	0.58	0.0	0.04	16.44	0.00	2.471	6.85	3.31	3.4	96.6	0.0	0.32	1.19	0.64	0.84	2.17	6513	791	4	0	8	0	0	logfile
✔	9CRA	45856	2025-04-30	2024-07-21	2.34	2.18	2.35	2.0	0.003	0.60	0.0	0.05	12.61	0.01	2.203	10.41	0.00	7.6	92.4	0.0	-0.84	0.82	0.82	3.02	2.0	0.003	0.61	0.0	0.05	15.40	0.01	2.506	7.06	2.48	7.1	92.9	0.0	-0.51	0.38	0.83	0.83	2.23	9842	1247	8	0	4	0	0	logfile
✔	9CR8	45854	2025-04-29	2024-07-21	3.8	3.66	3.65	3.7	0.003	0.49	0.0	0.04	12.79	0.00	2.219	7.50	0.22	6.6	93.4	0.0	0.48	0.63	0.77	1.73	3.7	0.003	0.56	0.0	0.04	15.27	0.00	2.515	6.71	3.25	6.3	93.7	0.0	1.12	0.47	0.66	0.77	1.42	8664	1087	2	0	15	0	0	logfile
✔	9G7F	51121	2025-04-30	2024-07-20	2.93	3.38	3.05	3.3	0.004	0.74	0.0	0.05	17.49	0.00	2.211	18.43	0.80	3.6	96.4	0.0	-0.38	0.74	0.75	1.43	3.3	0.003	0.71	0.0	0.05	18.06	0.00	2.568	15.06	3.98	3.4	96.6	0.0	-0.01	0.86	0.73	0.74	1.33	9647	1198	3	0	0	0	0	logfile
✔	9iTZ	60884	2025-04-28	2024-07-20	4.28	6.32	4.43	6.5	0.006	0.83	0.0	0.06	10.76	0.00	2.204	14.67	0.21	5.4	94.5	0.1	0.17	0.59	0.71	—	6.5	0.004	0.73	0.0	0.05	10.34	0.00	2.356	17.32	0.00	5.6	94.3	0.1	0.97	0.73	0.59	0.69	—	8039	1320	16	0	0	0	0	logfile
✔	9iTX	60882	2025-04-30	2024-07-20	4.1	5.56	4.24	4.6	0.003	0.55	0.0	0.04	11.86	0.00	2.245	9.77	0.00	3.8	96.2	0.0	2.91	0.59	0.70	—	4.6	0.005	0.70	0.0	0.05	12.01	0.01	2.361	18.62	0.00	4.7	95.3	0.0	1.59	0.92	0.61	0.72	—	9081	1368	16	0	0	0	0	logfile
✔	9iTQ	60875	2025-04-30	2024-07-20	3.98	4.54	3.95	4.2	0.010	0.66	0.0	0.04	15.13	0.00	2.128	12.34	0.50	4.5	95.5	0.0	0.87	0.58	0.75	0.43	4.2	0.005	0.91	0.0	0.05	16.24	0.00	2.487	25.22	5.95	4.7	95.3	0.0	0.58	0.73	0.59	0.77	-0.30	9411	1361	16	0	0	0	0	logfile
✔	9CR4	45832	2025-04-30	2024-07-20	2.81	2.35	2.85	2.1	0.003	0.56	0.0	0.05	9.52	0.00	2.190	7.48	0.00	7.7	92.3	0.0	-0.39	0.75	0.75	2.65	2.2	0.003	0.66	0.0	0.05	14.44	0.01	2.321	9.83	3.11	7.5	92.5	0.0	0.10	0.56	0.75	0.75	2.18	9099	1179	4	0	0	0	0	logfile
✔	9G79	51116	2025-04-28	2024-07-20	2.89	3.21	2.90	3.1	0.003	0.59	0.0	0.04	15.64	0.01	2.243	9.18	0.00	2.9	97.1	0.0	0.63	0.78	0.86	4.04	3.1	0.003	0.57	0.0	0.04	16.24	0.00	2.497	7.70	3.06	2.7	97.3	0.0	0.80	0.83	0.77	0.86	3.26	7232	898	2	0	0	0	0	logfile
✔	9CR3	45831	2025-04-30	2024-07-20	3.18	2.56	3.18	2.2	0.003	0.62	0.0	0.05	11.75	0.00	2.045	10.49	0.00	6.0	94.0	0.0	-0.53	0.76	0.81	2.93	2.2	0.003	0.66	0.0	0.05	15.35	0.00	2.499	10.54	2.95	10.7	89.3	0.0	-0.26	0.94	0.76	0.81	2.54	9299	1200	4	0	0	0	0	logfile
✔	9CQ7	45810	2025-04-27	2024-07-19	3.21	3.47	3.19	3.5	0.003	0.62	0.0	0.05	14.05	0.00	2.131	12.25	0.00	5.8	94.2	0.0	-0.70	0.68	0.74	2.52	3.4	0.003	0.67	0.0	0.05	16.19	0.00	2.480	9.45	4.16	5.4	94.6	0.0	-1.08	1.01	0.67	0.77	2.45	5222	660	7	0	4	0	0	logfile
✔	9G69	51096	2025-04-27	2024-07-18	4.84	4.50	4.72	4.9	0.002	0.62	0.0	0.05	8.65	0.00	2.386	2.80	0.00	7.6	92.3	0.1	-2.18	0.69	0.70	—	4.8	0.006	0.98	0.0	0.05	9.65	0.00	2.378	8.27	0.00	23.5	76.3	0.2	-4.33	0.53	0.72	0.74	—	5053	1028	5	0	1	0	0	logfile
✔	9iSV	60850	2025-04-28	2024-07-18	3.07	3.27	3.12	3.2	0.002	0.64	0.0	0.04	25.32	0.00	2.229	0.97	0.00	0.0	0.0	0.0	—	0.63	0.55	—	3.2	0.007	0.90	0.0	0.05	25.27	0.01	1.802	13.88	0.00	0.0	0.0	0.0	—	0.79	0.65	0.59	—	7537	0	1	351	0	0	0	logfile
✔	9Coo	45787	2025-04-28	2024-07-17	3.73	4.04	3.70	3.9	0.003	0.68	0.0	0.04	16.58	0.00	2.182	15.37	1.45	6.8	93.2	0.0	-2.63	0.79	0.75	0.77	3.9	0.005	0.76	0.0	0.04	17.00	0.00	2.221	12.86	6.21	9.3	90.7	0.0	-2.23	2.38	0.79	0.76	0.65	7493	1028	8	0	6	0	0	logfile
✔	9iSi	60836	2025-04-26	2024-07-17	3.56	3.80	3.46	3.7	0.005	0.67	0.0	0.04	14.08	0.00	2.397	9.20	0.00	2.5	97.5	0.0	1.49	0.50	0.67	1.52	3.8	0.003	0.63	0.0	0.04	15.56	0.00	2.636	7.21	3.15	2.9	97.1	0.0	2.27	1.51	0.52	0.72	1.36	1955	252	1	0	0	0	0	logfile
✔	9G5K	51088	2025-04-27	2024-07-17	2.87	2.98	2.84	2.9	0.004	0.62	0.0	0.04	15.28	0.00	2.263	5.33	0.70	2.4	97.6	0.0	1.73	0.56	0.78	2.93	2.9	0.004	0.65	0.0	0.04	16.46	0.00	2.501	5.21	2.82	2.8	97.2	0.0	2.14	0.90	0.64	0.84	2.76	4040	507	3	0	1	0	0	logfile
✔	9G5i	51087	2025-04-27	2024-07-17	3.2	3.11	3.08	3.7	0.010	1.03	0.0	0.07	13.94	0.01	2.262	9.85	0.00	4.7	95.3	0.0	-1.90	0.71	0.76	2.10	3.7	0.003	0.61	0.0	0.05	15.53	0.00	2.453	10.44	2.85	5.0	95.0	0.0	-1.13	1.22	0.72	0.76	1.94	5252	732	3	0	0	0	0	logfile
✔	9Co9	45774	2025-04-27	2024-07-16	3.44	4.12	3.45	3.9	0.006	1.02	0.0	0.06	12.97	0.01	2.330	6.14	0.72	6.3	93.1	0.6	-2.36	0.77	0.78	3.28	3.9	0.004	0.79	0.0	0.05	15.64	0.00	2.398	8.51	2.86	4.7	94.9	0.3	-1.44	2.39	0.75	0.83	2.86	5198	661	4	0	0	0	0	logfile

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