Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9C6o	45253	2025-04-27	2024-06-07	2.77	3.03	2.81	3.1	0.012	1.29	0.0	0.09	12.61	0.01	2.373	1.47	0.00	2.2	97.5	0.3	-0.10	0.68	0.75	4.18	3.1	0.003	0.65	0.0	0.04	14.64	0.00	2.580	4.32	1.11	1.6	98.3	0.1	1.64	0.54	0.65	0.78	3.88	6086	777	6	0	12	0	0	logfile
✔	9C6i	45247	2025-04-28	2024-06-07	2.56	3.19	2.64	2.9	0.008	0.68	0.0	0.04	25.62	0.01	1.892	11.33	0.00	0.0	0.0	0.0	—	0.92	0.89	—	2.9	0.010	0.74	0.0	0.05	25.15	0.01	1.844	9.20	0.00	0.0	0.0	0.0	—	1.28	0.93	0.93	—	8471	0	2	393	21	0	0	logfile
✔	9C58	45207	2025-04-28	2024-06-06	4.7	4.87	4.70	4.8	0.003	0.73	0.0	0.05	10.28	0.00	1.776	1.47	0.00	2.9	97.1	0.0	0.63	0.70	0.62	—	4.7	0.004	0.71	0.0	0.04	6.58	0.00	1.924	2.25	0.00	8.8	91.2	0.0	-1.22	1.63	0.76	0.72	—	7954	1590	6	0	2	0	0	logfile
✔	8ZSZ	60435	2025-04-27	2024-06-06	3.59	3.78	3.46	3.7	0.027	1.81	9.0	0.09	14.91	0.01	1.624	28.95	2.63	2.4	97.6	0.0	-0.01	0.59	0.75	1.47	3.7	0.014	0.69	0.0	0.04	16.53	0.00	1.827	15.42	4.04	2.6	97.4	0.0	1.22	0.77	0.59	0.75	0.91	4754	630	4	0	8	0	0	logfile
✔	9C5R	45221	2025-04-27	2024-06-06	2.61	2.41	2.39	2.4	0.006	0.79	0.0	0.05	13.54	0.00	2.346	7.09	0.00	7.7	92.3	0.0	-2.98	0.52	0.82	2.69	2.4	0.004	0.66	0.0	0.05	17.19	0.00	2.629	4.65	7.46	7.9	92.1	0.0	-3.14	0.39	0.55	0.84	2.64	5840	840	10	0	0	0	0	logfile
✔	8ZSJ	60417	2025-04-28	2024-06-05	2.8	3.25	2.87	3.2	0.005	0.68	0.0	0.05	12.91	0.01	2.216	8.42	0.12	3.4	96.6	0.0	0.88	0.70	0.84	3.96	3.2	0.003	0.56	0.0	0.04	15.65	0.00	2.495	6.61	1.85	2.8	97.2	0.0	1.08	0.99	0.62	0.85	3.35	8118	1035	6	0	1	4	0	logfile
✔	8ZRR	60403	2025-04-27	2024-06-05	3.61	2.82	3.10	2.7	0.008	0.99	0.0	0.05	16.46	0.01	1.345	8.98	3.81	3.5	95.7	0.8	0.51	0.58	0.70	1.24	2.7	0.003	0.79	0.0	0.05	16.55	0.00	2.386	8.60	4.26	2.8	97.2	0.0	1.43	0.75	0.59	0.73	1.72	4065	516	4	0	0	0	0	logfile
✔	8ZSB	60410	2025-04-27	2024-06-05	3.26	3.46	3.05	3.5	0.012	1.18	6.0	0.07	14.72	0.01	1.897	11.27	2.28	3.0	97.0	0.0	1.10	0.58	0.78	2.25	3.5	0.007	0.55	0.0	0.04	16.03	0.00	1.978	8.17	1.52	3.7	96.3	0.0	2.29	0.51	0.60	0.82	2.45	4798	614	4	0	2	0	0	logfile
✔	8ZSP	60423	2025-04-28	2024-06-05	3.14	2.39	3.22	3.2	0.008	0.72	0.0	0.05	14.31	0.00	2.247	9.97	0.12	3.2	96.8	0.0	0.24	0.75	0.75	2.72	2.2	0.003	0.63	0.0	0.04	16.24	0.00	2.535	8.34	1.51	2.6	97.4	0.0	0.67	0.91	0.76	0.79	2.24	8076	1033	6	0	1	0	0	logfile
✔	8ZRT	60404	2025-04-26	2024-06-05	3.62	3.79	3.42	3.8	0.003	0.70	0.0	0.04	16.25	0.01	2.227	13.78	0.81	3.1	96.9	0.0	0.00	0.47	0.72	1.94	3.8	0.003	0.73	0.0	0.04	16.79	0.01	2.546	13.13	7.26	4.8	95.2	0.0	1.04	0.32	0.47	0.72	2.05	2322	303	2	0	0	0	0	logfile
✔	9C4N	45191	2025-04-26	2024-06-04	2.9	2.74	—	2.9	0.013	1.70	0.0	0.06	9.18	0.01	2.779	0.00	0.00	14.3	85.7	0.0	-0.15	0.12	0.70	7.51	2.9	0.060	1.79	1.0	0.22	23.53	0.02	2.477	0.00	25.00	0.0	100.0	0.0	-6.32	1.38	0.19	0.79	5.31	69	9	1	0	0	0	0	logfile
✔	8ZRH	60396	2025-04-28	2024-06-04	3.6	2.84	3.63	2.1	0.007	0.93	0.0	0.05	16.05	0.01	2.383	9.08	1.82	3.8	95.9	0.3	0.45	0.61	0.67	0.80	2.2	0.004	0.84	0.0	0.05	17.13	0.01	2.355	11.48	3.86	5.1	94.8	0.1	-0.05	1.70	0.63	0.72	1.24	8036	1019	8	0	0	0	0	logfile
✔	8ZQQ	60388	2025-04-26	2024-06-03	2.5	2.79	2.52	2.8	0.003	0.65	0.0	0.04	16.30	0.00	2.211	2.21	0.25	2.5	97.5	0.0	1.76	0.64	0.87	3.26	2.8	0.003	0.56	0.0	0.04	14.71	0.00	2.205	2.33	1.51	1.9	98.1	0.0	2.20	0.87	0.63	0.86	2.84	3836	492	3	0	6	0	0	logfile
✔	9C45	45175	2025-04-27	2024-06-03	3.2	3.43	3.22	3.4	0.011	1.27	0.0	0.08	11.88	0.01	2.507	0.81	0.00	2.5	97.5	0.0	1.45	0.70	0.85	5.90	3.4	0.004	0.61	0.0	0.05	12.12	0.00	2.576	2.28	1.97	1.7	98.3	0.0	0.57	0.95	0.69	0.90	5.82	3900	496	6	0	9	0	0	logfile
✔	9C48	45177	2025-04-29	2024-06-03	2.4	2.10	2.43	1.8	0.006	0.93	0.0	0.06	16.10	0.00	2.232	5.54	0.00	2.7	97.3	0.0	-0.49	0.77	0.84	4.87	1.8	0.005	0.66	0.0	0.05	14.92	0.00	2.062	2.40	0.47	3.2	96.8	0.0	0.06	0.36	0.79	0.87	5.49	8481	993	18	0	36	249	0	logfile
✔	9C4B	45180	2025-04-27	2024-06-03	3.4	3.78	3.54	3.7	0.004	0.73	1.0	0.05	16.50	0.00	1.827	10.64	0.89	5.9	93.3	0.8	-0.46	0.62	0.72	1.52	3.7	0.003	0.55	0.0	0.04	17.03	0.00	2.394	7.86	2.37	7.0	92.8	0.3	-0.42	0.52	0.62	0.72	1.61	6110	393	1	0	0	0	3030	logfile
✔	9FKP	50524	2025-04-27	2024-06-03	3.72	3.74	3.09	3.3	0.002	0.50	0.0	0.04	8.23	0.00	2.202	7.06	1.86	4.0	96.0	0.0	-0.16	0.77	0.58	0.79	3.3	0.003	0.66	0.0	0.05	13.53	0.00	2.452	12.30	4.01	3.3	96.7	0.0	-1.03	0.75	0.78	0.62	1.30	6092	769	5	0	0	0	0	logfile
✔	8ZQR	60389	2025-04-26	2024-06-03	3.6	3.82	3.65	3.9	0.005	0.94	2.0	0.06	18.43	0.01	2.229	8.96	0.76	5.8	94.2	0.0	-0.86	0.60	0.80	1.77	3.9	0.003	0.71	0.0	0.04	16.91	0.00	2.578	6.33	2.80	3.8	96.2	0.0	0.81	1.03	0.54	0.80	0.77	3778	486	2	0	3	0	0	logfile
✔	8ZQo	60386	2025-04-27	2024-06-03	2.8	2.96	2.76	3.0	0.004	0.76	0.0	0.05	17.77	0.01	2.155	4.33	1.20	1.8	98.2	0.0	1.88	0.66	0.88	2.87	3.0	0.002	0.53	0.0	0.04	15.38	0.00	2.211	1.98	0.48	1.9	98.1	0.0	2.79	0.88	0.62	0.87	2.37	4032	515	3	0	7	1	0	logfile
✔	9FK5	50519	2025-04-27	2024-06-02	4.1	4.17	3.38	3.5	0.003	0.52	0.0	0.04	9.26	0.00	2.030	7.29	2.25	5.2	94.8	0.0	-0.88	0.78	0.61	—	3.6	0.003	0.63	0.0	0.05	12.00	0.00	2.465	7.47	0.00	3.4	96.4	0.1	-1.06	0.91	0.80	0.65	—	5765	735	5	0	0	0	0	logfile

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