Table showing results for April 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZQE	60384	2025-04-29	2024-06-02	2.9	2.31	3.03	2.1	0.004	0.71	0.0	0.05	13.70	0.00	2.169	12.51	0.21	4.5	95.5	0.0	-0.15	0.74	0.75	2.45	2.1	0.003	0.69	0.0	0.04	17.21	0.00	2.503	10.04	2.33	3.5	96.5	0.0	0.06	1.33	0.77	0.81	2.42	8767	1131	6	0	0	0	0	logfile
✔	8ZQ9	60379	2025-04-27	2024-06-01	2.87	3.10	2.91	3.0	0.007	1.13	0.0	0.11	23.71	0.01	2.272	12.58	2.11	6.5	93.5	0.0	-1.99	0.61	0.64	1.54	3.0	0.003	0.63	0.0	0.03	22.99	0.00	2.501	12.04	5.01	5.3	94.7	0.0	-0.20	1.01	0.69	0.77	2.00	6211	433	3	125	1	0	0	logfile
✔	8ZPZ	60369	2025-04-30	2024-05-31	3.5	3.77	3.54	3.8	0.003	0.77	0.0	0.04	14.10	0.01	2.123	9.26	0.31	7.5	92.5	0.0	-3.25	0.63	0.81	1.58	3.8	0.003	0.66	0.0	0.04	15.20	0.00	2.515	6.64	2.30	5.9	94.1	0.0	-1.59	0.52	0.62	0.78	0.92	9103	1179	2	0	1	0	0	logfile
✔	8ZPS	60353	2025-04-29	2024-05-31	2.97	2.45	2.76	3.0	0.003	0.54	0.0	0.04	9.77	0.00	1.744	8.01	1.06	2.4	97.6	0.0	1.49	0.49	0.65	1.55	2.9	0.010	0.65	0.0	0.04	15.00	0.00	2.338	7.33	2.66	3.6	96.4	0.0	0.81	1.41	0.63	0.79	2.40	8848	1135	7	0	1	0	0	logfile
✔	8ZQ4	60370	2025-04-30	2024-05-31	3.8	4.11	3.88	4.0	0.007	1.05	0.0	0.06	11.24	0.01	2.275	2.80	0.10	8.8	91.2	0.0	-5.93	0.65	0.81	2.41	4.0	0.003	0.72	0.0	0.04	15.06	0.00	2.381	5.61	1.87	6.5	93.5	0.0	-1.73	0.83	0.66	0.81	0.94	9216	1186	2	0	3	0	0	logfile
✔	8ZPX	60366	2025-04-30	2024-05-31	3.5	3.77	3.55	3.8	0.005	0.82	0.0	0.05	13.74	0.01	1.929	9.25	0.00	8.8	91.2	0.0	-4.46	0.64	0.80	2.00	3.8	0.003	0.65	0.0	0.04	15.37	0.00	2.402	5.42	2.71	7.2	92.8	0.0	-2.79	0.36	0.60	0.78	1.35	9065	1178	1	0	0	0	0	logfile
✔	8ZPW	60365	2025-04-30	2024-05-31	3.0	3.15	2.94	3.2	0.003	0.53	0.0	0.04	15.06	0.00	2.043	6.26	1.19	2.0	98.0	0.0	1.19	0.78	0.87	3.54	3.2	0.003	0.56	0.0	0.04	15.89	0.00	2.525	6.97	1.29	1.8	98.2	0.0	1.25	0.40	0.78	0.87	3.14	9252	1145	4	0	4	0	0	logfile
✔	9FJF	50502	2025-04-30	2024-05-31	3.7	3.65	—	3.6	0.009	1.08	0.0	0.07	15.89	0.01	2.248	5.09	0.10	4.8	95.2	0.0	-2.01	0.73	0.81	2.81	3.6	0.003	0.61	0.0	0.04	15.06	0.00	2.581	3.18	1.86	4.1	95.9	0.0	-2.01	0.42	0.72	0.79	2.88	9307	1124	16	0	27	27	0	logfile
✔	9C3F	45167	2025-04-26	2024-05-31	3.78	4.13	3.78	4.2	0.009	1.27	2.0	0.06	21.43	0.03	2.277	7.47	4.47	3.1	96.9	0.0	1.59	0.53	0.74	0.56	4.2	0.003	0.59	0.0	0.04	18.85	0.00	2.597	6.18	3.16	2.9	97.1	0.0	2.05	0.36	0.53	0.73	0.79	3800	485	2	0	2	0	0	logfile
✔	8ZPT	60354	2025-04-29	2024-05-31	2.96	2.53	2.84	3.0	0.002	0.45	0.0	0.04	10.05	0.00	1.974	6.41	0.20	2.2	97.8	0.0	1.57	0.57	0.73	2.45	3.0	0.006	0.68	0.0	0.04	15.46	0.00	2.481	5.92	3.03	3.2	96.8	0.0	0.48	1.78	0.60	0.79	2.87	9151	1162	7	0	1	0	0	logfile
✔	9C3B	45164	2025-04-27	2024-05-31	3.4	3.72	3.45	3.6	0.007	0.88	0.0	0.05	16.52	0.02	2.213	9.76	3.24	8.2	90.2	1.5	-0.94	0.32	0.77	0.80	3.6	0.003	0.64	0.0	0.04	16.35	0.01	2.500	6.94	2.55	5.8	93.5	0.7	-0.52	1.00	0.33	0.90	3.19	4329	588	2	0	0	0	0	logfile
✔	8ZPP	60351	2025-04-26	2024-05-30	3.6	3.76	3.27	3.7	0.008	0.75	0.0	0.05	12.66	0.00	2.241	12.88	0.00	4.1	95.9	0.0	-0.26	0.64	0.77	2.55	3.7	0.004	0.70	0.0	0.05	16.42	0.00	2.483	10.68	4.27	3.9	96.1	0.0	-0.61	1.17	0.65	0.78	2.07	3266	419	3	0	0	0	0	logfile
✔	9C2A	45152	2025-04-28	2024-05-30	2.74	2.08	2.73	1.9	0.008	0.95	0.0	0.06	12.74	0.01	2.207	6.15	0.00	2.6	97.4	0.0	-1.18	0.75	0.77	4.66	1.9	0.003	0.52	0.0	0.04	14.49	0.00	2.519	4.27	2.65	2.4	97.6	0.0	0.59	0.43	0.78	0.81	4.33	7833	933	12	0	21	102	0	logfile
✔	8ZPN	60350	2025-04-26	2024-05-30	3.31	3.36	3.31	3.6	0.003	0.60	0.0	0.04	20.02	0.00	2.323	7.70	0.00	4.1	95.9	0.0	0.32	0.57	0.80	1.02	3.6	0.003	0.60	0.0	0.04	17.35	0.00	2.563	6.13	2.44	4.6	95.4	0.0	0.57	0.90	0.56	0.81	0.89	3204	398	3	0	2	0	0	logfile
✔	9C2B	45153	2025-04-28	2024-05-30	2.42	2.65	2.43	2.7	0.007	0.99	0.0	0.06	18.26	0.01	2.161	3.71	0.00	2.1	97.9	0.0	0.27	0.67	0.85	4.42	2.7	0.004	0.62	0.0	0.05	16.94	0.00	1.902	3.14	2.17	1.3	98.7	0.0	1.36	0.32	0.69	0.87	4.03	8208	990	15	0	24	141	0	logfile
✔	9C1U	45130	2025-04-26	2024-05-29	2.31	2.35	2.46	2.4	0.004	0.47	0.0	0.05	10.27	0.00	2.112	2.84	0.00	0.3	99.7	0.0	0.19	0.71	0.87	6.57	2.4	0.004	0.59	0.0	0.05	14.80	0.00	2.595	8.31	3.85	0.0	100.0	0.0	0.25	0.42	0.68	0.89	6.41	2376	312	12	0	0	0	0	logfile
✔	8ZNi	60272	2025-04-26	2024-05-27	3.29	4.18	3.32	3.9	0.015	1.65	0.0	0.21	14.83	0.00	1.220	19.67	0.00	10.4	89.6	0.0	-3.51	0.76	0.59	-0.17	3.9	0.003	0.80	0.0	0.05	15.29	0.00	2.563	11.83	6.34	13.9	86.1	0.0	-3.50	3.18	0.79	0.66	0.44	3585	496	3	0	6	0	0	logfile
✔	9FHB	50444	2025-04-28	2024-05-27	3.87	4.06	3.87	4.0	0.005	0.99	0.0	0.05	15.86	0.01	2.140	16.76	3.25	4.1	95.1	0.8	-0.41	0.70	0.77	1.38	4.0	0.003	0.70	0.0	0.04	16.71	0.00	1.994	8.76	3.25	4.0	95.9	0.1	1.01	1.18	0.71	0.79	0.91	6751	862	8	0	7	0	0	logfile
✔	8ZNC	60267	2025-04-26	2024-05-26	2.41	2.55	1.33	2.5	0.007	0.97	0.0	0.05	19.34	0.01	2.408	6.47	1.76	2.4	97.6	0.0	0.66	0.53	0.90	3.96	2.5	0.002	0.54	0.0	0.04	19.17	0.00	2.450	5.87	1.47	1.2	98.8	0.0	1.36	1.18	0.50	0.90	4.06	3356	416	2	0	3	24	0	logfile
✔	8ZNG	60270	2025-04-26	2024-05-26	2.5	2.65	1.33	2.6	0.007	0.92	0.0	0.05	19.32	0.01	2.439	3.91	3.24	2.9	97.1	0.0	1.28	0.60	0.89	4.31	2.6	0.003	0.53	0.0	0.04	17.81	0.00	2.488	5.27	2.06	2.2	97.8	0.0	1.21	0.81	0.55	0.92	4.06	3347	416	2	0	2	16	0	logfile

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